HHsearch 1.5 NAME c9ji4E_ FAM FILE c9ji4E_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9ji4E_.a3m DATE Sat Sep 20 10:01:18 2025 LENG 83 match states, 83 columns in multiple alignment FILT 101 out of 143 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4684 2.1752 SEQ >ss_pred CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCC >ss_conf 98421520128128999842688568999999999998754321000001566663125777863999999997097110579 >Consensus xxxxxxxxmxxPsIdxLLekvdSrYxLVxlAAKRARqIxxxxxxlxxxxxxgxxplvxxxxxxKPvsiALxEIaxGkitxxxg >c9ji4E_ GGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEG >UniRef50_B2GD58(2-83:94) DNA-directed RNA polymerase subunit omega n=4 Tax=Lactobacillus RepID=RPOZ_LACF3 E=2e-06 s/c=0.65 id=36% cov=87% --------ILFPSVDKLLERVDSRYSLIMLASKRAHEIDKYRIDKwraahPDKAGETVslegdkPLLLDHYDSNKSVGMALEEIEAGLVT---- >UniRef50_Q4FLD7(1-62:180) DNA-directed RNA polymerase subunit omega n=3 Tax=Candidatus Pelagibacter RepID=RPOZ_PELUB E=4e-05 s/c=0.80 id=33% cov=70% -------------VEDCIDKVESPYELVLVAKERAVQLNS-----------GLEPTLDRDNDKNTV-ISLREIAADTIKVSD- >UniRef50_C1XXM7(1-77:108) DNA-directed RNA polymerase, omega subunit n=2 Tax=Meiothermus RepID=C1XXM7_9DEIN E=6e-08 s/c=0.76 id=30% cov=86% --------MAEPGIDTLLTVTDSKYRLTVVVAKRAQQLLRYQFKntvLEPSEWPKMRTLEGEKPDPNPVTWAMQELRTGRL----- >UniRef50_Q0AD35(1-57:67) DNA-directed RNA polymerase subunit omega n=4 Tax=Betaproteobacteria RepID=RPOZ_NITEC E=8e-07 s/c=0.96 id=31% cov=61% -------------VEDCLKVIPNRFNMTLAATVRARQIS-----------VGSTPMIDAGR-DKPIVIALRELAQ-------- >UniRef50_UPI00016C01ED(1-89:93) hypothetical protein Epulo_06790 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01ED E=1e-05 s/c=0.58 id=31% cov=87% --------MLEPSYSQLMEKINedagtqmitSRYSIIIATAKRARQIIELINQEASGdlrdrrKVDEALEFKERLKSTKPTSIAVLELYRGDIQ---- >UniRef50_Q182S6(1-61:88) DNA-directed RNA polymerase subunit omega n=6 Tax=Clostridium RepID=RPOZ_CLOD6 E=2e-11 s/c=1.15 id=29% cov=75% --------MLKPSINEVLEKIDNRYYLVGTVSKRARKL-----------IDGEEPYVSNKTKEKPVCVATKEVASGKITY--- >UniRef50_C2D6B7(13-89:107) Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6B7_9ACTN E=1e-07 s/c=0.75 id=27% cov=88% --------ITKPEINSLLEKTeENPFLLCAIAAKRACDIKSMIrgQHLRVAAINDIDTITTEVSGKDPVSAAMNEIDSGDLSY--- >UniRef50_A6DHN4(1-69:73) Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN4_9BACT E=2e-07 s/c=0.83 id=37% cov=78% ----------NSYIANALEVIGDKNVLVNLAAKRASQINKGDHPLIDTPRDaHNRPLVLST-----LEIALIEIAEGKVT---- >UniRef50_Q3YSH8(1-62:138) DNA-directed RNA polymerase subunit omega n=5 Tax=canis group RepID=RPOZ_EHRCJ E=3e-07 s/c=0.91 id=35% cov=66% -------------VEECMGRTNNKFKLVILASQRAHDLNSGACP------------VIKHKNGKNTVIALKEIAAKQLD---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1717 0 0 G 2 * * * * * 2614 * * * * * 2629 * * * * 567 * * * 2 0 * * * * * * 1717 0 0 Y 3 * * * 2517 * * * * 2665 * * * * 2629 * * * 1545 * 2614 3 0 * * * * * * 1717 0 0 D 4 1574 * 3237 1555 * * * * * * * * 2199 * * * * * * * 4 0 * * * * * * 2122 0 0 T 5 1457 * * * * * * * * * * * * 3398 1915 * 2420 3492 * * 5 0 * * * * * * 2247 0 0 P 6 3492 * * * * 2834 * * * * * * 375 * * * * * * * 6 0 * * * * * * 2247 0 0 L 7 2844 * * 1118 * * * 2895 * 3839 * * * * 3105 * 3650 * * * 7 0 * * * * * * 2450 0 0 G 8 * * * * * 1067 * * * * * * * * * 936 * * * * 8 0 * * * * * * 3247 0 0 I 9 * * * * * * * 1827 * 2391 1070 * * * * * * 4288 * * 9 0 * * * * * * 4366 0 0 T 10 3479 * * * * * * 1969 * 1957 4272 3557 * * * 4764 2778 3678 * * 10 0 * * * * * * 4366 0 0 N 11 * * 3635 2462 4637 * * * 2901 * * 1765 * * 4113 3794 * * * 2836 11 0 * * * * * * 4454 0 0 P 12 * * * * * * * * * * * * 63 * * 4541 * * * * 12 0 * * * * * * 4667 0 0 P 13 4039 * * 4328 * 4203 * * 5261 * * * 2184 * 5370 937 * * * 4559 13 0 * * * * * * 4672 0 0 I 14 6254 * * * 5211 * * 1159 * 3338 4499 * * * * * 6764 1577 * 5334 14 0 * * * * * * 5138 0 0 D 15 4503 * 1117 1713 * 6892 * * 5211 * * 3334 * * * 5334 * 5043 * * 15 0 * * * * * * 5138 0 0 E 16 4483 * 1511 2303 * * * 6363 3414 * * 4448 * 3882 4519 3481 4887 6047 * * 16 0 * * * * * * 5138 0 0 L 17 4296 2106 * * * * * 4389 * 667 5850 * * * * * 7312 6002 * * 17 0 * * * * * * 5138 0 0 L 18 6824 * * 6343 * * * 3255 6427 725 3003 * 7312 5568 6220 5876 5364 4299 * * 18 0 * * * * * * 5138 0 0 D 19 5319 * 2701 1518 * 6647 * * 2321 6344 * 5147 6374 4313 5826 3381 4657 7455 * * 19 0 * * * * * * 5138 0 0 R 20 * * * 4228 * 5931 3866 5437 1194 4278 * 5263 4905 4239 3287 * 5772 3482 * 5198 20 0 * * * * * * 5142 0 0 V 21 3940 6564 * * * 4928 * 2207 5948 6552 * 5759 * * * 5069 2718 1209 * 6028 21 30 5602 * 520 1723 * * 5136 1624 0 S 22 * * 1170 2942 * 3504 * * 4825 6532 * 3108 3153 5229 * 4788 * * * * 22 56 4703 * 2442 293 * * 5134 1750 0 S 23 * * 4922 * * * * * * * * 1548 * * * 737 5312 * * * 23 23 5966 * 0 * * * 5137 1000 0 K 24 * 6286 6136 * * * * * 1495 * * * 4359 6334 954 * 6611 * * 5026 24 0 * * * * * * 5137 0 0 Y 25 * * * * 1786 * * * * * * 5280 * * * * * * * 547 25 0 * * * * * * 5137 0 0 A 26 2906 * 4151 3163 * 3977 * 4518 4095 3624 6710 6008 * * 4282 2265 3180 4555 * 6097 26 0 * * * * * * 5137 0 0 L 27 * * * * 5363 * * 3707 * 236 5275 * * * * 6136 * 6609 * * 27 0 * * * * * * 5137 0 0 V 28 3712 3527 * * * * * 3530 * * * * * * * 5372 4373 561 * * 28 0 * * * * * * 5137 0 0 I 29 3690 * * * * 6097 4724 2127 * 2520 3593 4825 * 5412 * 5230 3499 2251 * * 29 0 * * * * * * 5137 0 0 Y 30 2397 * * * 4590 * * 4261 6694 1274 3732 * * * * * 5305 2705 * 4664 30 0 * * * * * * 5137 0 0 A 31 700 * * * * 4789 * 5283 * * * * * * * 3635 3748 2578 * * 31 0 * * * * * * 5137 0 0 A 32 616 * * * * * * 6436 5504 * * * * * * 2004 5078 4839 * * 32 0 * * * * * * 5137 0 0 K 33 6441 * * 5504 * * 5177 * 538 5431 6057 * * 4005 2846 * * 6541 * * 33 0 * * * * * * 5137 0 0 R 34 * * * * * * * * * * * * * 5350 62 * 5836 * * * 34 0 * * * * * * 5137 0 0 A 35 166 * * * * * * 5901 * * * * * * * 4797 5115 5206 * * 35 0 * * * * * * 5137 0 0 R 36 * 5013 * * * * 3413 * 4438 4875 * 6057 * 4496 514 5280 * 6697 * * 36 10 * 7207 * * * * 5137 0 0 Q 37 7062 * 3717 2520 * 7358 7218 6692 3748 7284 5315 7071 * 821 6533 * * 5833 * 6395 37 28 * 5685 * * * 0 5146 0 1000 I 38 * * * * * * * 653 * 1667 5410 * * * * * * * * 5278 38 233 * 2748 * * * 0 5143 0 1909 N 39 3188 * 3988 4040 6217 6025 * 4441 5628 4751 * 1793 * 3610 3270 4869 4616 3556 * * 39 240 * 2703 * * * 0 5089 0 3220 D 40 2631 * 2773 2219 * 6244 * * 3850 * * 3752 * 3736 4556 2792 4806 5432 * * 40 259 5718 2782 4524 64 * 0 5028 1000 3564 Y 41 * * 5742 3457 * 1821 6158 * 5093 4884 3614 5476 * 3614 * 5798 5477 * * 1719 41 74 5900 4898 3459 138 * 0 4869 1000 3558 Y 42 2650 * 4317 5953 4693 * * 3506 3893 3704 4067 5614 5739 3086 4951 3772 4027 * * 3057 42 199 5133 3314 1000 1000 * 0 4853 1000 3460 N 43 3299 4194 5309 3536 4058 * 3402 4834 4263 4803 * 2916 5138 3287 4283 3555 4899 * * 5545 43 80 5107 5309 1000 1000 * 0 4731 1000 3580 Q 44 3238 * 3517 3345 * 4219 3662 * 3731 * * 3898 3497 2474 5475 4355 3423 * * * 44 279 4661 2877 1585 585 * 0 4690 1000 3508 L 45 5299 * * 2543 * 4862 * 4924 3854 882 * 4239 * 4640 * 5022 * * * * 45 107 5541 4313 2322 322 4383 71 4459 1000 3778 G 46 3581 * * 3742 * 1738 3944 4173 5917 4014 * 5632 4190 5348 2825 5623 5420 4087 * * 46 86 * 4116 * * * 0 4416 0 4070 E 47 4003 * 2004 1547 * * * 3963 5299 4234 * * 4294 * * 4225 * 3338 * * 47 236 * 2729 * * 4751 55 4366 0 4066 G 48 3906 * * * * 1529 * 3710 5118 4549 * 3470 * 4510 4414 3060 2857 * * * 48 130 3537 * 2090 386 3431 140 4185 1518 4351 I 49 2354 * * 3601 * * * 5706 4340 1095 * * 4452 * * 4433 4152 4757 * * 49 47 * 4971 * * 2040 402 4497 0 4334 L 50 4426 4883 * 3972 3768 4101 * 2323 5020 2199 5549 * * * 4712 5504 3709 3726 4570 * 50 76 5828 4883 0 * 2129 374 4720 1000 4071 E 51 3394 * 1940 1913 * 3808 6534 * 6086 5745 * 3771 4828 3926 5841 * 4634 5005 * * 51 169 4790 3753 0 * 2041 402 4679 1000 3946 Y 52 * * 3934 4142 6274 966 3733 5881 4447 4264 5046 4267 * * * * 4799 * * 4478 52 0 * * * * 4002 93 4548 0 3936 V 53 2345 * 3654 4717 4461 * * 3837 3849 5415 4968 4752 5919 4765 * 3415 * 2248 * 4300 53 27 5729 * 2585 263 2436 295 4607 1000 3942 G 54 4692 * 4299 2056 * 2564 * * 4138 4232 5605 * 2700 5341 3249 4711 4667 6787 * * 54 0 * * * * 2107 381 4679 0 3735 P 55 4256 * 5645 4431 * 4521 * 5766 * 3732 * * 630 * * 6753 4144 5543 * 6572 55 0 * * * * 2539 272 4761 0 3572 L 56 5331 * * 5639 4787 6131 * 4699 3901 1208 3651 * 4855 4323 7018 4890 3570 4117 * 5723 56 52 5499 6244 0 * 1711 526 4831 1000 3450 V 57 5122 * * 4576 * * * 2859 5232 2457 4310 * * 4732 * * 4423 1158 * * 57 33 * 5446 * * 1829 477 4866 0 2909 E 58 4515 * 2446 2310 * 4732 6165 5073 6356 3863 5853 5594 5029 4599 * 2992 3246 3882 * * 58 0 * * * * 1450 657 4907 0 3017 P 59 4531 * 6484 2636 * 5787 3544 * 3625 * 5483 3381 4842 7001 2885 2943 3981 3590 * 5210 59 64 * 4527 * * 1317 740 4956 0 2826 G 60 3803 6603 2836 3425 5287 4152 4938 * 3366 4413 * 7005 3838 6553 * * 2598 4038 6902 3269 60 124 * 3604 * * 1371 705 5001 0 2798 L 61 5275 * 2794 3957 6645 * 5476 6260 2323 5753 * 2902 4459 6217 2913 3563 5823 3926 * 6934 61 69 * 4423 * * 1014 986 4963 0 3277 Q 62 4499 6521 3094 4268 * 2827 * * 4833 * 6337 2730 * 4734 5380 1536 5956 6141 * * 62 43 7146 5488 0 * 1006 994 4965 1000 3045 E 63 6049 * 2760 2571 6363 6509 5377 * 2007 * 5240 2855 4493 5149 4628 * 4410 5012 * 5869 63 0 * * * * 533 1694 5001 0 2721 K 64 6323 * 4023 * * * 5212 * 389 * * 3185 * * 5303 * * * * * 64 12 * 6873 * * * 0 5060 0 1440 P 65 5989 * 6134 4903 5575 * * * * 5410 * 5568 596 * * 3445 4246 5755 * 4425 65 0 * * * * 0 * 5061 0 1741 L 66 6677 * * * * * * 3735 * 2000 * * * * * 6044 3429 844 * * 66 123 * 3618 * * * * 5124 0 0 S 67 * 6006 * 5233 * 2811 * 6281 6115 * * 5882 * 6069 * 1596 2170 2299 * * 67 0 * * * * 0 * 5087 0 2159 I 68 5213 * * * * * * 1512 4170 3551 3634 6878 * 4532 3770 5362 4016 2567 5566 * 68 0 * * * * * * 5124 0 0 A 69 109 * * * * * * * * * * * * * * 3776 * * * * 69 0 * * * * * * 5124 0 0 L 70 6242 * * * 4225 * * 3981 * 748 2885 * * * * * 4779 3285 * * 70 0 * * * * * * 5124 0 0 R 71 * * 4704 1601 * * 4054 5273 3980 5471 6339 4917 * 4476 1564 7014 6242 * 6567 * 71 0 * * * * * * 5124 0 0 E 72 * * * 36 * * * * * * * * * 5344 * * * * * * 72 0 * * * * * * 5124 0 0 I 73 * * * * 4169 * * 615 * 2774 5449 * * * * * * 3029 * * 73 0 * * * * * * 5124 0 0 H 74 1099 * 4065 4427 6897 4181 5026 4691 * * 5402 3612 * 5918 4124 5235 * 5825 7116 3983 74 0 * * * * * * 5124 0 0 A 75 1792 * 3393 1919 * 6129 6607 * 4704 * 6771 4753 * 4322 4535 3366 4255 * * * 75 0 * * * * * * 5124 0 0 D 76 * * 2816 5683 * 522 * * 4995 * * 4326 * 6968 7332 4738 6742 * * * 76 21 6129 * 1000 1000 * * 5103 1000 0 L 77 * * 4520 5256 5222 * 6291 * 994 2418 4894 * * 6138 4918 6654 4498 4118 * 6843 77 0 * * * * * * 4958 0 0 L 78 5747 * * * * * * 1578 * 1846 * * * * * * * 1441 * * 78 0 * * * * * * 4940 0 0 E 79 * * 2686 3376 * * * * 3630 6139 * 4509 * 4759 5572 3292 1262 4954 * * 79 0 * * * * * * 4562 0 0 H 80 * 4131 * 4958 * * 2973 * 4750 * * * * 3493 5295 * * 3453 * 887 80 0 * * * * * * 4100 0 0 T 81 * * * 2698 * 2337 * * 3804 * * 3442 * * * 3321 1380 * * * 81 0 * * * * * * 2984 0 0 E 82 * * 1560 2501 * * * * 3849 3508 * * * * * 3872 3339 3738 3562 * 82 0 * * * * * * 2984 0 0 G 83 * * * * * 0 * * * * * * * * * * * * * * 83 0 * * 0 * * * 2587 0 0 //