HHsearch 1.5
NAME  c9j2fG_
FAM   
FILE  c9j2fG_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c9j2fG_.a3m 
DATE  Sat Dec 21 10:55:47 2024
LENG  28 match states, 28 columns in multiple alignment
FILT  2 out of 4 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.1 
EVD   0.5729  6.1725 
SEQ
>ss_pred
CCCCCCCEEEEEEHHHCCCHHHEEEEEC
>ss_conf
9864542023443331423221011309
>Consensus
qpsixdwnlwvplgilgiptiwialxyr
>c9j2fG_
QPSITDWNLWVPLGILGIPTIWIALLYR
>UniRef50_P04126(10-36:36) Light-harvesting protein B-1015 gamma chain n=1 Tax=Blastochloris viridis RepID=LHG_RHOVI  E=3e-06 s/c=1.96 id=89% cov=100%
-PSISDWNLWVPLGILGIPTIWIALTYR
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
Q 1    *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

P 2    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1053	0	0	

S 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	3
       0	*	*	*	*	*	*	1053	0	0	

I 4    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1053	0	0	

T 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	5
       0	*	*	*	*	*	*	1053	0	0	

D 6    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1053	0	0	

W 7    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	7
       0	*	*	*	*	*	*	1053	0	0	

N 8    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1053	0	0	

L 9    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1053	0	0	

W 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	10
       0	*	*	*	*	*	*	1053	0	0	

V 11   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	11
       0	*	*	*	*	*	*	1053	0	0	

P 12   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1053	0	0	

L 13   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1053	0	0	

G 14   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1053	0	0	

I 15   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1053	0	0	

L 16   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1053	0	0	

G 17   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1053	0	0	

I 18   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1053	0	0	

P 19   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1053	0	0	

T 20   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	20
       0	*	*	*	*	*	*	1053	0	0	

I 21   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1053	0	0	

W 22   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	22
       0	*	*	*	*	*	*	1053	0	0	

I 23   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1053	0	0	

A 24   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1053	0	0	

L 25   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1053	0	0	

L 26   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	26
       0	*	*	*	*	*	*	1053	0	0	

Y 27   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	27
       0	*	*	*	*	*	*	1053	0	0	

R 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	28
       0	*	*	0	*	*	*	1053	0	0	

//