HHsearch 1.5 NAME c9ivsE_ FAM FILE c9ivsE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9ivsE_.a3m DATE Sat Apr 12 15:06:07 2025 LENG 37 match states, 37 columns in multiple alignment FILT 2 out of 4 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.5266 4.6890 SEQ >ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCC >ss_conf 9643455525188888766654146876034410279 >Consensus pitfgdfxxgeixxlxsxxltfgdfxpgevxxltdsx >c9ivsE_ PITFGDFNDGEIESLSSELLTFGDFLPGEVDDLTDSD >UniRef50_P13886(1849-1885:2514) RNA-directed RNA polymerase nsP4 n=133 Tax=Alphavirus RepID=POLN_ONNVG E=6e-08 s/c=1.58 id=66% cov=103% PITFGDFAEGEIDNLLTGALTFGDFEPGEVEELTDSE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 1252 0 0 I 2 * * * * * * * 0 * * * * * * * * * * * * 2 0 * * * * * * 1252 0 0 T 3 * * * * * * * * * * * * * * * * 0 * * * 3 0 * * * * * * 1252 0 0 F 4 * * * * 0 * * * * * * * * * * * * * * * 4 0 * * * * * * 1252 0 0 G 5 * * * * * 0 * * * * * * * * * * * * * * 5 0 * * * * * * 1252 0 0 D 6 * * 0 * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1252 0 0 F 7 * * * * 0 * * * * * * * * * * * * * * * 7 0 * * * * * * 1252 0 0 N 8 1000 * * * * * * * * * * 1000 * * * * * * * * 8 0 * * * * * * 1252 0 0 D 9 * * 1000 1000 * * * * * * * * * * * * * * * * 9 0 * * * * * * 1252 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 1252 0 0 E 11 * * * 0 * * * * * * * * * * * * * * * * 11 0 * * * * * * 1252 0 0 I 12 * * * * * * * 0 * * * * * * * * * * * * 12 0 * * * * * * 1252 0 0 E 13 * * 1000 1000 * * * * * * * * * * * * * * * * 13 0 * * * * * * 1252 0 0 S 14 * * * * * * * * * * * 1000 * * * 1000 * * * * 14 0 * * * * * * 1252 0 0 L 15 * * * * * * * * * 0 * * * * * * * * * * 15 0 * * * * * * 1252 0 0 S 16 * * * * * * * * * 1000 * * * * * 1000 * * * * 16 0 * * * * * * 1252 0 0 S 17 * * * * * * * * * * * * * * * 1000 1000 * * * 17 0 * * * * * * 1252 0 0 E 18 * * * 1000 * 1000 * * * * * * * * * * * * * * 18 0 * * * * * * 1252 0 0 L 19 1000 * * * * * * * * 1000 * * * * * * * * * * 19 0 * * * * * * 1252 0 0 L 20 * * * * * * * * * 0 * * * * * * * * * * 20 0 * * * * * * 1252 0 0 T 21 * * * * * * * * * * * * * * * * 0 * * * 21 0 * * * * * * 1252 0 0 F 22 * * * * 0 * * * * * * * * * * * * * * * 22 0 * * * * * * 1252 0 0 G 23 * * * * * 0 * * * * * * * * * * * * * * 23 0 * * * * * * 1252 0 0 D 24 * * 0 * * * * * * * * * * * * * * * * * 24 0 * * * * * * 1252 0 0 F 25 * * * * 0 * * * * * * * * * * * * * * * 25 0 * * * * * * 1252 0 0 L 26 * * * 1000 * * * * * 1000 * * * * * * * * * * 26 0 * * * * * * 1252 0 0 P 27 * * * * * * * * * * * * 0 * * * * * * * 27 0 * * * * * * 1252 0 0 G 28 * * * * * 0 * * * * * * * * * * * * * * 28 0 * * * * * * 1252 0 0 E 29 * * * 0 * * * * * * * * * * * * * * * * 29 0 * * * * * * 1252 0 0 V 30 * * * * * * * * * * * * * * * * * 0 * * 30 0 * * * * * * 1252 0 0 D 31 * * 1000 1000 * * * * * * * * * * * * * * * * 31 0 * * * * * * 1252 0 0 D 32 * * 1000 1000 * * * * * * * * * * * * * * * * 32 0 * * * * * * 1252 0 0 L 33 * * * * * * * * * 0 * * * * * * * * * * 33 0 * * * * * * 1252 0 0 T 34 * * * * * * * * * * * * * * * * 0 * * * 34 0 * * * * * * 1252 0 0 D 35 * * 0 * * * * * * * * * * * * * * * * * 35 0 * * * * * * 1252 0 0 S 36 * * * * * * * * * * * * * * * 0 * * * * 36 0 * * * * * * 1252 0 0 D 37 * * 1000 1000 * * * * * * * * * * * * * * * * 37 0 * * 0 * * * 1252 0 0 //