HHsearch 1.5 NAME c9hvoF_ FAM FILE c9hvoF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9hvoF_.a3m DATE Sat Jul 19 12:05:29 2025 LENG 82 match states, 82 columns in multiple alignment FILT 53 out of 55 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4242 0.3070 SEQ >ss_pred CCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHEEECC >ss_conf 9875420375324456567887878886459823673688748999999999729996899997899978887756447739 >Consensus xxxxxrxtxpxLTkfExARIiGxRAlQisxgApxxixxxxxxdplxIAxxElxxxxiPxxIrRxlPxGxyEdxxvxeLxixx >c9hvoF_ QANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD >UniRef50_A9A2B7(102-178:182) RNA polymerase Rpb6 n=3 Tax=Archaea RepID=A9A2B7_NITMS E=2e-09 s/c=0.82 id=40% cov=94% EKNKVTIGPPTLTRFEKARIMGARALQLSLGAPPFIPIPKTARiSLDISMEELEQRVIPITIRRVLPNGDYQNIPID------ >UniRef50_A6UVZ8(4-55:61) RNA polymerase Rpb6 n=7 Tax=Methanococcus RepID=A6UVZ8_META3 E=1e-08 s/c=1.18 id=45% cov=65% ------------TKFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPL----------------- >UniRef50_Q387N1(24-122:131) DNA-directed RNA polymerase subunit, putative n=4 Tax=Trypanosoma RepID=Q387N1_9TRYP E=3e-18 s/c=0.94 id=39% cov=98% -PLKDRKSSVYLTKYEVARIIGERARQIVNGTSVLLDSQNgcgtgnslelaegcadpfaaSVDPIHITKLELLQGRIPMIVRRTWPDGRTENIPVNELKV -- >UniRef50_Q8ZTF9(22-103:106) DNA-directed RNA polymerase subunit K n=5 Tax=Thermoproteaceae RepID=RPOK_PYRAE E=2e-15 s/c=1.01 id=44% cov=95% --NKREFYPPRLTKYETARIIGARALQLAMGAQPLVDIQevGSVDPVLIAMEELRRGLLDFIIVREMPDGKTMRIRLKELL--- >UniRef50_P0C9D6(65-147:151) DNA-directed RNA polymerase subunit 6 homolog n=8 Tax=African swine fever virus RepID=RPB6_ASFM2 E=5e-13 s/c=0.91 id=34% cov=96% -PDNERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRcikVTPEGQkiVEIWNPREMGI-- >UniRef50_B1L6H7(2-66:84) DNA-directed RNA polymerase, subunit K n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6H7_KORCO E=8e-09 s/c=0.95 id=40% cov=76% --NSDLLGPKRLTKFEKVRIISVRAQQIATGSPLFLEeneiPEGLTDPIELAKLELEKGKLPILIGR------------------- >UniRef50_Q5UQ32(183-262:396) DNA-directed RNA polymerase subunit 6 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO6_MIMIV E=6e-21 s/c=1.26 id=38% cov=99% -PDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHLPGKKYEDWRIDELGMI- >UniRef50_D2TEV8(6-74:81) Putative RNA polymerase Rpb6 n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEV8_9VIRU E=4e-11 s/c=1.00 id=30% cov=85% -------TSSYLTRFELARLAGIVELQLQDNKTSVIDSSKTLH--DQAVDIVLNKETDIVIRRILPGDSYEDVSLKTL---- >UniRef50_B8D5H9(10-85:106) DNA-directed RNA polymerase subunit K n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D5H9_DESK1 E=2e-12 s/c=0.96 id=36% cov=91% ----EEVFSKRLTRFEIARVVGARALQLSMGAPPIIDVSNLpvKDPVYIAVNELITGLLPMSIRRI-NNGREELVPVGKLL--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * 1100 * * * * * * * * * 907 * * * * * * 1 0 * * * * * * 1896 0 0 A 2 1913 * * * * * * * 3198 * * * 677 * * * * * * * 2 0 * * * * * * 2675 0 0 N 3 * * 1925 4819 * * * * 2603 3716 * 1514 * * 5141 4331 4952 * * * 3 0 * * * * * * 2928 0 0 Q 4 * * 2467 4326 * 5060 5058 * 1582 * * 2128 * 5383 * 3029 * * * * 4 0 * * * * * * 3041 0 0 K 5 * * 2832 1484 * * * 3695 2363 5402 * * 5496 4332 4586 * 4955 4027 * * 5 0 * * * * * * 3228 0 0 R 6 * * * 3143 * * 5913 * 3026 4811 * * * * 574 * 4638 * * * 6 0 * * * * * * 3213 0 0 I 7 6158 * * 3569 3564 * * 1651 3200 3831 5418 * * * 3871 5101 3606 3098 * * 7 0 * * * * * * 3237 0 0 T 8 * * * * 4204 2463 * * * * * * * * * 3022 791 * * 3982 8 0 * * * * * * 3428 0 0 T 9 5269 * 3770 * * 4513 * * * 4326 * * 1558 * * 2007 2519 * * 4494 9 0 * * * * * * 3428 0 0 P 10 * * * 5587 5431 * * 5417 3173 4513 * 4358 881 * 3552 3917 * 4839 * * 10 0 * * * * * * 3428 0 0 Y 11 * * * * 3254 * 5298 3118 4010 * * * * * 2593 * 4497 3895 5504 1347 11 0 * * * * * * 3432 0 0 M 12 * * * * * * * 3610 * 445 2595 * * * * * * * * 5803 12 0 * * * * * * 3372 0 0 T 13 * * * * * * * * * * * * * * * 4938 48 * * * 13 0 * * * * * * 3372 0 0 K 14 * * * * * * * * 764 * * * * * 1808 5587 4595 * * 3979 14 0 * * * * * * 3414 0 0 Y 15 * * * * 959 * * * * * * * * * * * * * * 1042 15 0 * * * * * * 3414 0 0 E 16 * * * 0 * * * * * * * * * * * * * * * * 16 0 * * * * * * 3414 0 0 R 17 4595 * * * 5102 * * 2775 1566 3965 * * * 5424 1874 * 5826 3885 * * 17 0 * * * * * * 3414 0 0 A 18 213 * * * * * * * * * * * * * * * 4595 3384 * * 18 0 * * * * * * 3414 0 0 R 19 * * * * * * 5436 * 4093 * * * * * 152 * * 5767 * * 19 0 * * * * * * 3414 0 0 V 20 * * * * * * * 722 * 2363 * * * * * * * 2326 * * 20 0 * * * * * * 3414 0 0 L 21 3965 * * * * * * 1360 * 1428 4343 * * * * * * 2994 * * 21 12 * 6972 * * * * 3414 0 0 G 22 3823 * * * * 242 * * * * * * * * * 3580 * * * * 22 0 * * * * * 0 3415 0 1000 T 23 1597 * * 3879 * * * 3379 * * * * * * * 4556 1866 2406 * * 23 0 * * * * * 0 3415 0 1000 R 24 * * * * * * * * * * * * * * 96 * * 3964 * * 24 0 * * * * * 0 3415 0 1000 A 25 194 * * 3964 * * * * * * * * * * * 4941 5099 * * * 25 0 * * * * * 0 3415 0 1000 L 26 * * * * 5402 * * 5750 3895 643 5906 * * 2979 4069 * 5391 * * 5420 26 0 * * * * * 0 3415 0 1000 Q 27 * * * * * * * * * * * * * 0 * * * * * * 27 0 * * * * * 0 3415 0 1000 I 28 * * * * 3976 * * 850 * 1389 * * * * * * * * * * 28 0 * * * * * 0 3415 0 1000 A 29 1777 * * * * * * * * * 5099 3976 * 3964 * 940 * 5040 * * 29 0 * * * * * 0 3415 0 1000 M 30 5391 * 3010 * * * * 3570 5877 3247 1393 3704 * 5956 * 3834 5520 * * 3643 30 0 * * * * * 0 3415 0 1000 C 31 * 5493 * * * 506 * * * * * 1869 * * * * * * * * 31 0 * * * * * 0 3415 0 1000 A 32 359 * * * * 4591 * * 3964 * * 5075 * * * 4187 5040 * * * 32 49 4914 * 0 * * 0 3415 1000 1000 P 33 4735 * * * 5016 * * * 4352 5954 * * 639 5819 5853 3431 3964 * * 4941 33 0 * * * * 0 * 3415 0 1000 V 34 3308 * * * * * * 3255 * 3716 4741 * 1735 * * 3965 4595 1863 * * 34 29 5655 * 0 * * * 3414 1000 0 M 35 * * * * 3112 * 5424 3783 * 1441 2910 * * 5916 * 4741 2877 3965 * 4925 35 27 5755 * 3000 193 * * 3414 1000 0 V 36 * * 5655 * * * * 1330 4917 2934 * * * * * * 6021 1311 * * 36 0 * * * * * * 3414 0 0 E 37 * * 1448 1996 * 4917 * 5655 3219 * * 4535 2830 6033 * * 5424 * * * 37 94 5523 4595 2000 415 * * 3414 1000 0 L 38 * * 6018 * * 3816 * 2271 * 2535 * 5706 3313 * * 2737 2994 2852 * * 38 19 6248 * 0 * 0 * 3337 1000 1000 E 39 * * 3370 2015 * 4656 * * 2739 * * 4553 3566 4096 * 2533 4042 4395 * * 39 194 3189 5931 1115 894 * * 3414 2056 0 G 40 5924 4950 4799 2851 * 1356 * * 2247 * * 3314 * * * 4744 4741 * * * 40 226 3661 3919 2887 209 0 * 3372 2025 1000 E 41 * * 3874 2142 * 3476 5388 5509 4326 3709 6204 * * 4666 6017 2604 2570 * * 4575 41 181 3084 * 3130 175 0 * 3358 2237 1765 T 42 3808 * 5960 * * * * 4292 5666 2858 3979 5556 * * 4576 2467 1844 3295 * 5968 42 24 5930 * 0 * * * 3414 1000 0 D 43 * * 745 5931 * * 2972 * * * * 4421 * * 5631 2842 4537 * * 6610 43 179 5631 3373 0 * * * 3414 1000 0 P 44 4586 * * * * 4876 * * * * * * 326 * * 3426 * 4898 * * 44 0 * * * * 972 1029 3215 0 1676 L 45 3889 * * * * * * 1933 * 1031 6245 * * * * * * 2573 * * 45 47 * 4949 * * 0 * 3250 0 1000 L 46 4055 * 1812 3826 * 6064 5038 4925 3371 3399 4737 4642 * 3566 4666 4955 6005 4478 * 5596 46 0 * * * * 0 * 3349 0 1000 I 47 5157 * * * * * * 474 * 4473 3310 * * 3965 * * * 4574 * * 47 0 * * * * * * 3414 0 0 A 48 75 * * * * * * * * * * * * * * 5602 5041 * * * 48 0 * * * * * * 3412 0 0 M 49 5894 * * 2688 3425 * * 4725 2813 3839 2479 5421 * 5829 3287 6012 5749 3574 6426 4939 49 0 * * * * * * 3412 0 0 K 50 6268 * 3961 1939 * 5915 * 5650 2168 3548 5421 4301 * 4080 4482 * * 3677 * 4028 50 0 * * * * * * 3412 0 0 E 51 * * 4738 155 * * * 3961 * * * * * * * * * * * * 51 0 * * * * * * 3412 0 0 L 52 * * * * 2647 * * 4939 * 571 * * * * * * * 3505 * 4429 52 0 * * * * * * 3412 0 0 K 53 4353 * 4109 2557 4589 * 5547 5662 2232 2921 * 5250 * 6550 3221 4993 3967 5113 * 5202 53 0 * * * * * * 3412 0 0 A 54 2626 * * 3270 * * * * 3358 4881 * 2364 * 1942 3220 5556 5662 * * * 54 0 * * * * * * 3412 0 0 R 55 * * 5853 * * 1416 * * 1667 * * 3162 * * 2465 * * * * * 55 0 * * * * * * 3412 0 0 K 56 4637 * * 3961 * * * 3513 1351 3039 3967 * * * 4148 5547 6422 2827 * * 56 0 * * * * * * 3412 0 0 I 57 * * * * * * * 936 * 1914 5853 * * * * * 2788 4325 * * 57 0 * * * * * * 3412 0 0 P 58 * * 3609 * * * * * * * * * 292 * 4738 3967 * * * * 58 0 * * * * * * 3412 0 0 I 59 * * * * 2038 * * 1400 * 1969 3347 * * * * * * 5391 * * 59 0 * * * * * * 3412 0 0 I 60 * * 4800 * * * * 1367 3424 3190 * * * * * 3947 2277 3284 * * 60 0 * * * * * * 3412 0 0 I 61 * * * * * * * 933 * 5547 * * 4939 * * * * 1244 * * 61 0 * * * * * * 3412 0 0 R 62 * * * * * 5493 * 3468 2924 * 4589 * * * 605 * * 4919 * 5391 62 0 * * * * * * 3412 0 0 R 63 * * * * * * * * 5002 * * * * * 46 * * * * * 63 75 4294 * 1585 585 * * 3405 1000 0 Y 64 * * * 5084 5106 * 3394 3164 5227 * * * 5090 * 2778 * 3741 2872 5265 1759 64 44 * 5061 * * * * 3500 0 0 L 65 * * * * 3805 * * * * 604 5018 * * * * * 3144 * 3278 5409 65 0 * * * * 0 * 3462 0 1000 P 66 * * * * * * * * * * * 4947 171 4823 * 4500 * * * * 66 0 * * * * * * 3457 0 0 D 67 * * 1373 3669 * 2559 * * * * * 1599 * * * 4823 * * * * 67 0 * * * * * * 3457 0 0 G 68 * * 3979 * * 392 6018 * 3203 * * * * 5404 * 5209 * * * * 68 0 * * * * * * 3457 0 0 S 69 4540 * 3827 5557 * 4849 * * 1994 * 5929 5371 * 3770 3545 1767 3809 * 6085 * 69 76 4291 * 1000 1000 * * 3457 1000 0 Y 70 * * * 3864 3459 4846 6339 5093 * * * * * * 4605 * 3942 2670 * 998 70 0 * * * * * * 3430 0 0 E 71 * * * 401 * * * * * * 5027 * * 2886 * * * 3704 * * 71 0 * * * * * * 3430 0 0 D 72 * * 908 3829 * * * 4210 * 2955 * 3243 * * 5027 4846 4546 * * * 72 0 * * * * * * 3430 0 0 W 73 * * * * 4506 * * 1896 * 4846 * * * * * * * 2716 1122 4605 73 0 * * * * * * 3430 0 0 G 74 3838 * * 5356 4506 6160 5949 * 3085 * * 4210 1929 * 3289 2069 4150 * * * 74 0 * * * * * * 3430 0 0 V 75 * 6035 * * * * * 2325 * 1618 * * 4210 * * * 5945 1362 * * 75 0 * * * * * * 3430 0 0 D 76 6332 * 1723 3997 * 4920 * * 2608 * 5021 3134 * 4641 3581 3150 * * 4506 * 76 0 * * * * * * 3430 0 0 E 77 * 4757 * 554 * * * * 2926 * * * * 5894 4752 * 3956 * * 4969 77 0 * * * * * * 3418 0 0 L 78 * * * * * * * 3905 * 192 4115 * * * * * * * * * 78 0 * * * * * * 3388 0 0 I 79 * * * 3532 * 2829 4737 1859 4307 2523 3128 * * 5259 * 5412 * 3815 * * 79 0 * * * * * * 3147 0 0 I 80 * * * * * * * 1437 * 4439 2963 * * * 4288 * * 1303 * * 80 0 * * * * * * 2769 0 0 S 81 3233 * * * * * * 1147 * 1977 * * * * * 3451 * 3370 * * 81 0 * * * * * * 2164 0 0 D 82 * * 255 * * * * * * * * 2628 * * * * * * * * 82 0 * * 0 * * * 1904 0 0 //