HHsearch 1.5
NAME  c9hr9A_
FAM   
FILE  c9hr9A_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c9hr9A_.a3m 
DATE  Sat Sep 20 09:39:36 2025
LENG  26 match states, 26 columns in multiple alignment
FILT  1 out of 3 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.5628  4.7979 
SEQ
>ss_pred
CEEEEECCCCEEEEEEEEEEEECCCC
>ss_conf
95898716621773133166401139
>Consensus
ikytiynstgiqigaynymeigxxxx
>c9hr9A_
IKYTIYNSTGIQIGAYNYMEIGXXXX
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
I 1    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

K 2    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

Y 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	3
       0	*	*	*	*	*	*	1000	0	0	

T 4    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

I 5    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

Y 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	6
       0	*	*	*	*	*	*	1000	0	0	

N 7    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

S 8    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

T 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

G 10   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

I 11   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

Q 12   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

I 13   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

G 14   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

A 15   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

Y 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	16
       0	*	*	*	*	*	*	1000	0	0	

N 17   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

Y 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	18
       0	*	*	*	*	*	*	1000	0	0	

M 19   *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

E 20   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

I 21   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

G 22   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

X 23   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	23
       *	*	*	*	*	*	*	1000	0	0	

X 24   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	24
       *	*	*	*	*	*	*	1000	0	0	

X 25   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	25
       *	*	*	*	*	*	*	1000	0	0	

X 26   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	26
       0	*	*	0	*	*	*	1000	0	0	

//