HHsearch 1.5 NAME c9gu5L_ FAM FILE c9gu5L_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9gu5L_.a3m DATE Sat Feb 8 10:58:36 2025 LENG 68 match states, 68 columns in multiple alignment FILT 42 out of 44 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4048 -0.3766 SEQ >ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCEEEEEEEEEECEEEEEEECCCCEEEEEEEEEEEECCCEEECC >ss_conf 95127899999974498399999347189889987230899996799329997554455037715319 >Consensus xqnlQdxfLnxxRkxxxxVtixLvnGxxlxGxIxxfDxfxVllxxxxxQLVYKHAISTIxpxxxxxxx >c9gu5L_ GQSLQDPFLNALRRERVPASIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHH >UniRef50_Q3A502(7-66:77) RNA-binding protein Hfq n=11 Tax=Desulfuromonadales RepID=Q3A502_PELCD E=6e-08 s/c=0.97 id=41% cov=90% --NIQDQYLNQARKERVRVNIIMMSGEKLDGFIKSFDSFCVLIESKGDLLLYKHAISSITSA------ >UniRef50_B6IY17(4-73:117) Host factor protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IY17_RHOCS E=1e-15 s/c=1.21 id=35% cov=100% -EALQSKVLDVLRTGGTEVTVFLVTGVRLVGRIVAHDAYSLALTGHGGglQLIYKHAVTTLVPSSPLSLY >UniRef50_C1SNE1(70-128:142) RNA chaperone Hfq n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNE1_9BACT E=2e-14 s/c=1.36 id=39% cov=87% ---MQDIFLNEVRKSRSPIISFLINGVKIRGSLIGFDNYTLLTSfEGRQQLVYKNTVSTIFP------- >UniRef50_B7JTR0(20-75:77) RNA chaperone Hfq n=19 Tax=Bacillus cereus group RepID=B7JTR0_BACC0 E=5e-07 s/c=0.99 id=36% cov=82% ----QEYLLQEAFQKRKNIMLILLKGLHIKGIIRGYDIFSILIEyEGKQQLVYKHAISTI--------- >UniRef50_B7IZ69(4-75:83) Host factor Hfq n=4 Tax=Bacillus cereus group RepID=B7IZ69_BACC2 E=4e-06 s/c=0.73 id=31% cov=87% -QTVQNKVIENVKGKNSKVNFILNNGFRIEGKIVAYDDFCILVSTKapsnekqigdkqvfQNQLIYKHNISTI--------- >UniRef50_Q5HPN7(5-64:79) Host factor-I protein, putative n=64 Tax=Staphylococcus RepID=Q5HPN7_STAEQ E=5e-12 s/c=1.20 id=33% cov=88% -ENIQDQALENFKSEKTEVTIFFLNGFQMKGVVENYDKYVVSLNSQGKQhLIYKHAISTFT-------- >UniRef50_C8W3I4(19-80:85) RNA chaperone Hfq n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3I4_DESAS E=1e-11 s/c=1.15 id=39% cov=91% --SVQNKILVQLKEQQASIIVYLINGYRLGGKLKDFDTFTVILEEKETQyIVYKHAISTIIPEK----- >UniRef50_C3IB87(12-71:72) Host factor-I protein n=1 Tax=Bacillus thuringiensis IBL 200 RepID=C3IB87_BACTU E=4e-09 s/c=1.04 id=27% cov=88% -KMIQEDMYKELIDKKRTVTIFLKSGVLIRGKILSTDKFTVfMMVQGKQQLVFKQALSTII-------- >UniRef50_Q0JYN3(16-79:108) Putative uncharacterized protein h16_B2359 n=2 Tax=Cupriavidus RepID=Q0JYN3_RALEH E=7e-07 s/c=0.86 id=35% cov=79% ---LQHQQFAAYRTSQAPVIVHLATGARLQGLVLASDDYVVLLgrqpDDIRPTVVYKRAI------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 962 * * * * 1039 * * * * * * * * * * * * * * 1 0 * * * * * * 1631 0 0 Q 2 * * * 1511 * * * * 3242 * * * * 880 * * * * * * 2 0 * * * * * * 2912 0 0 S 3 3952 * * * * * 4417 * * * 3546 781 * * * 2669 3969 * * * 3 0 * * * * * * 3145 0 0 L 4 * * * * * 4865 * 1891 * 876 4491 * * * * * * 3229 * * 4 0 * * * * * * 3309 0 0 Q 5 * * * * * * * * * * * * * 0 * * * * * * 5 0 * * * * * * 3385 0 0 D 6 * * 764 2272 * * 4241 * * * * 3206 * * * 4545 * * * * 6 0 * * * * * * 3385 0 0 P 7 5994 * 3235 5052 * 5452 6150 4141 2470 4155 * * 3681 2450 4767 3195 4912 4809 * 4574 7 0 * * * * * * 3385 0 0 F 8 3861 * * * 946 * * 3853 * 3455 4637 * * 4241 * * * 3567 * 3752 8 0 * * * * * * 3385 0 0 L 9 * * * * 4241 * * 4589 * 378 4964 * * * * * * * * 3261 9 0 * * * * * * 3385 0 0 N 10 4241 * 4545 3153 * * * * 3830 * * 711 * 4574 * * 4881 4844 * * 10 0 * * * * * * 3385 0 0 A 11 2471 * 4862 3043 * * 4322 * 4881 5452 5757 3030 * 2280 5607 * 3124 4545 4952 * 11 25 * 5837 * * * * 3385 0 0 L 12 2088 * * * 4768 * * 4103 * 1277 * * * * * * * 2292 * 4233 12 0 * * * * * 0 3377 0 1000 R 13 * * * * 4559 * * 3739 2480 * * * * * 508 * * * * * 13 0 * * * * * 0 3377 0 1000 R 14 * * 4625 2890 * 4571 * * 1024 * * * * 4559 4142 4117 3113 5758 * * 14 0 * * * * * 0 3377 0 1000 E 15 4897 * 3826 1290 * 4040 * * 2531 * * 4316 * 4339 * 2703 * * * * 15 0 * * * * * 0 3423 0 1000 R 16 * * * * * 3451 6014 * 1485 * * 2960 * 3633 1686 5981 * * * * 16 0 * * * * * 0 3423 0 1000 V 17 3633 * * * * 5066 * 1998 3442 * * 4792 * * 3767 3142 2806 2463 * * 17 0 * * * * * 0 3423 0 1000 P 18 4792 * 5723 2751 * * * 5066 4112 4897 * 3745 1695 4392 3363 3955 4052 5505 * * 18 0 * * * * * 0 3423 0 1000 A 19 4683 5251 * * * * * 2699 * 3814 * * * * * * * 495 * * 19 0 * * * * * 0 3423 0 1000 S 20 4393 * 5251 5066 * * * 2675 4776 * 4582 3602 * * * 3343 1229 4211 * * 20 0 * * * * * 0 3423 0 1000 I 21 * * * * 4600 * * 979 * 4582 * * * * * 4648 * 1435 * * 21 0 * * * * * 0 3423 0 1000 Y 22 * * * * 1324 * 3316 3032 * * * * * * * * * * * 1404 22 0 * * * * * 0 3425 0 1000 L 23 * * * * 4783 * * * * 117 4595 * * * * * * * * * 23 0 * * * * * 0 3425 0 1000 V 24 4417 * * * * * * 3070 3834 2491 3983 4629 * * * 4772 4885 1279 * * 24 0 * * * * * 0 3425 0 1000 N 25 * * * * * * * * 4277 * * 671 * * 4885 2344 3481 * * * 25 0 * * * * * 0 3425 0 1000 G 26 * * * * * 0 * * * * * * * * * * * * * * 26 0 * * * * * 0 3425 0 1000 I 27 4417 * * 4595 2233 * * 2830 * 4627 * 4885 * * * * 4772 1412 * 3802 27 0 * * * * * 0 3425 0 1000 K 28 * * * * * * 4627 * 1627 4640 * * 5736 2107 1536 * * * * * 28 0 * * * * * 0 3425 0 1000 L 29 * * * * * * * 2183 * 744 3833 * * * * * 4777 3716 * * 29 0 * * * * * 0 3425 0 1000 Q 30 * * 4595 3385 * 4894 * * 2049 * 5721 * 4882 2468 2980 5515 3339 3229 * * 30 0 * * * * 0 * 3425 0 1000 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 3434 0 0 Q 32 * 5060 * 5084 4084 * * 3102 2265 3621 6040 * * 3428 2922 4260 5132 3090 * 4733 32 0 * * * * * * 3434 0 0 I 33 * * * * * * * 874 * 3863 * * * * * * * 1374 * * 33 0 * * * * * * 3434 0 0 E 34 5869 * 6084 2783 * * * 3859 2297 2678 * * * * 2619 5132 4238 2945 5638 * 34 0 * * * * * * 3434 0 0 S 35 1947 * 3901 * * 1941 * * * * * 4791 * * * 1678 * * 4691 5272 35 0 * * * * * * 3434 0 0 F 36 * * * * 684 * 4573 5084 * * * * * 4894 * 3593 4651 4899 * 3107 36 0 * * * * * * 3434 0 0 D 37 * * 0 * * * * * * * * * * * * * * * * * 37 0 * * * * * * 3434 0 0 Q 38 4125 * 3532 * * * * 4643 2245 4954 * 1716 * 2867 * 3347 4908 * * * 38 0 * * * * * * 3434 0 0 F 39 * * * * 735 * * * * * * * * * * * * * * 1325 39 0 * * * * * * 3434 0 0 V 40 * 2830 * * * * * 5556 * 5060 4784 * * * * 2270 1409 2411 * * 40 0 * * * * * * 3434 0 0 I 41 * * * * * * * 2157 * 3112 5869 * * * * * * 637 * * 41 59 4651 * 0 * * * 3434 1000 0 L 42 3953 * * * * * * 3110 * 634 3841 * * * * 4791 * 3848 * * 42 43 5084 * 0 * * * 3434 1000 0 L 43 * * * * * * * 2727 * 602 4062 * * * * * 4820 3401 * * 43 268 2558 * 1251 786 * * 3434 2039 0 K 44 * * 3981 1328 * * * * 3414 * * 4791 * * 2647 3199 3826 3852 * * 44 449 1903 * 203 2931 * * 3434 2431 0 N 45 * * 1742 2318 * 4573 * * * * 5897 2899 * 4189 * 2631 3454 * * * 45 116 3697 * 427 1965 * * 3434 1784 0 T 46 * * * 4776 * 1188 4573 4426 3129 * * 3551 3915 3837 5556 4360 5055 * * * 46 59 4646 * 3807 107 * * 3434 1000 0 V 47 5744 * * 4908 * 2710 4567 6028 1969 * 5869 3262 5272 3796 3061 5875 4784 3476 * * 47 0 * * * * * * 3434 0 0 S 48 5744 * 4605 * * 3796 * * 4196 * * 4201 3593 1217 5272 3523 3173 5469 * * 48 169 3179 * 435 1942 * * 3434 1893 0 Q 49 * * * * * * * * * 4605 * 4187 * 284 * * 3593 * * * 49 260 2601 * 0 * * * 3434 2219 0 M 50 * * * * 4899 5060 * 4908 * 464 2922 * * * * * * 4426 * * 50 0 * * * * * * 3434 0 0 V 51 * * * * * * * 1126 * 4605 * * * * * * * 997 * * 51 0 * * * * * * 3434 0 0 Y 52 * * * * 3368 * * * * * * * * * * * * * * 147 52 0 * * * * * * 3434 0 0 K 53 * * * * * * * * 0 * * * * * * * * * * * 53 0 * * * * * * 3434 0 0 H 54 5132 * * * * * 407 * * * * 4820 * 3852 3148 * * * * * 54 0 * * * * * * 3434 0 0 A 55 158 * * * * * * * 5132 * * 4646 * * * * 4820 * * * 55 0 * * * * * * 3434 0 0 I 56 * * * * * * * 364 * 4003 * * * * * * * 2639 * * 56 0 * * * * * * 3434 0 0 S 57 * * * * * * * * * * * * * * * 202 2933 * * * 57 0 * * * * * * 3392 0 0 T 58 * * * * * * * * * * * * * * * 4049 157 4546 * * 58 0 * * * * * * 3392 0 0 V 59 * * * * 3597 * * 496 * 4460 * * * * * * * 2619 * * 59 0 * * * * * * 3392 0 0 V 60 2939 * * * 4345 * * 2767 * 5582 3002 * * 4438 * 4278 2430 2032 * * 60 0 * * * * * * 3193 0 0 P 61 * * * * * * * * * * * * 191 * * 3538 4723 * * * 61 0 * * * * * * 2891 0 0 S 62 1411 * * 3256 * 3511 * * 4537 5112 * * * 3448 * 1899 * * * * 62 0 * * * * * * 2833 0 0 R 63 * * * * * 5536 2972 * 1462 * * 5069 * 5196 1918 2862 5118 * * * 63 0 * * * * * * 2759 0 0 P 64 * * * 3371 4631 * * * * * * 2830 976 * * 3081 * * * 3386 64 0 * * * * * * 2510 0 0 V 65 * * * * * * * 1645 * 2505 4514 * * * * * * 1120 * * 65 0 * * * * * * 2509 0 0 S 66 3985 * * 3705 * * * * 3953 3721 * 2040 * 3090 2998 2096 * * * * 66 0 * * * * * * 2504 0 0 H 67 * * * * 2696 * 2680 * * 703 * * * * * * * * * 3732 67 0 * * * * * * 2475 0 0 H 68 * * * * * * 1067 * * * * * * 2220 * * * * * 1699 68 0 * * 0 * * * 1940 0 0 //