HHsearch 1.5 NAME c9gu5H_ FAM FILE c9gu5H_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9gu5H_.a3m DATE Sat Feb 8 10:35:39 2025 LENG 64 match states, 64 columns in multiple alignment FILT 42 out of 44 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4083 0.0897 SEQ >ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCEEEEEEEEEECEEEEEEECCCCEEEEEEEEEEEECCCC >ss_conf 9512789999997349839999934718988998723089999679932999765545522799 >Consensus xqnlQdxfLnxxrkxxxxVxixLvnGxxlxGxIxxfDxfxVllxxxxxQLVYKHAISTIxpxxp >c9gu5H_ GQSLQDPFLNALRRERVPASIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRP >UniRef50_C8W3I4(19-80:85) RNA chaperone Hfq n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3I4_DESAS E=4e-07 s/c=0.90 id=39% cov=97% --SVQNKILVQLKEQQASIIVYLINGYRLGGKLKDFDTFTVILEEKETQyIVYKHAISTIIPEK- >UniRef50_Q3A502(7-66:77) RNA-binding protein Hfq n=11 Tax=Desulfuromonadales RepID=Q3A502_PELCD E=3e-18 s/c=1.54 id=41% cov=95% --NIQDQYLNQARKERVRVNIIMMSGEKLDGFIKSFDSFCVLIESKGDLLLYKHAISSITSA-- >UniRef50_Q73AM9(18-77:78) Host factor-I protein n=136 Tax=Bacillus RepID=Q73AM9_BACC1 E=4e-11 s/c=1.15 id=28% cov=94% -EHLQEELYKQIKEEKGIVTIFLKSGVRIVGEVVAIDKFTVLmLVDGKQQLIYKQAVSTIM---- >UniRef50_B7JTR0(20-75:77) RNA chaperone Hfq n=19 Tax=Bacillus cereus group RepID=B7JTR0_BACC0 E=3e-09 s/c=1.12 id=36% cov=88% ----QEYLLQEAFQKRKNIMLILLKGLHIKGIIRGYDIFSILIEyEGKQQLVYKHAISTI----- >UniRef50_Q0JYN3(16-72:108) Putative uncharacterized protein h16_B2359 n=2 Tax=Cupriavidus RepID=Q0JYN3_RALEH E=0.0008 s/c=0.79 id=35% cov=84% ---LQHQQFAAYRTSQAPVIVHLATGARLQGLVLASDDYVVLLgrqpDDIRPTVVYKRAI-------- >UniRef50_C1SNE1(70-128:142) RNA chaperone Hfq n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNE1_9BACT E=3e-14 s/c=1.35 id=39% cov=92% ---MQDIFLNEVRKSRSPIISFLINGVKIRGSLIGFDNYTLLTSfEGRQQLVYKNTVSTIFP--- >UniRef50_B6IY17(4-69:117) Host factor protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IY17_RHOCS E=3e-13 s/c=1.16 id=36% cov=100% -EALQSKVLDVLRTGGTEVTVFLVTGVRLVGRIVAHDAYSLALTGHGGglQLIYKHAVTTLVPSSP >UniRef50_Q5HPN7(5-64:79) Host factor-I protein, putative n=64 Tax=Staphylococcus RepID=Q5HPN7_STAEQ E=8e-13 s/c=1.25 id=33% cov=94% -ENIQDQALENFKSEKTEVTIFFLNGFQMKGVVENYDKYVVSLNSQGKQhLIYKHAISTFT---- >UniRef50_B7IZ69(4-75:83) Host factor Hfq n=4 Tax=Bacillus cereus group RepID=B7IZ69_BACC2 E=4e-08 s/c=0.82 id=31% cov=92% -QTVQNKVIENVKGKNSKVNFILNNGFRIEGKIVAYDDFCILVSTKapsnekqigdkqvfQNQLIYKHNISTI----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 962 * * * * 1039 * * * * * * * * * * * * * * 1 0 * * * * * * 1631 0 0 Q 2 * * * 1511 * * * * 3242 * * * * 880 * * * * * * 2 0 * * * * * * 2912 0 0 S 3 3952 * * * * * 4416 * * * 3546 781 * * * 2668 3977 * * * 3 0 * * * * * * 3147 0 0 L 4 * * * * * 4865 * 1889 * 876 4489 * * * * * * 3234 * * 4 0 * * * * * * 3311 0 0 Q 5 * * * * * * * * * * * * * 0 * * * * * * 5 0 * * * * * * 3389 0 0 D 6 * * 764 2266 * * 4217 * * * * 3231 * * * 4548 * * * * 6 0 * * * * * * 3389 0 0 P 7 5992 * 3235 5038 * 5457 6144 4138 2483 4154 * * 3678 2439 4781 3198 4912 4809 * 4573 7 0 * * * * * * 3389 0 0 F 8 3862 * * * 945 * * 3853 * 3454 4627 * * 4217 * * * 3595 * 3751 8 0 * * * * * * 3389 0 0 L 9 * * * * 4217 * * 3804 * 378 * * * * * * * * * 3251 9 0 * * * * * * 3389 0 0 N 10 4217 * 4548 3174 * * * * 3818 * * 711 * 4573 * * 4872 4842 * * 10 0 * * * * * * 3389 0 0 A 11 2742 * 4865 3038 * * 4322 * 4872 5457 5784 3050 * 2271 5609 4983 3126 4548 4955 * 11 26 * 5830 * * * * 3389 0 0 L 12 2093 * * * 4768 * * 4094 * 1274 * * * * * * * 2302 * 4208 12 0 * * * * * 0 3380 0 1000 R 13 * * * * 4557 * * 3730 2490 * * * * * 506 * * * * * 13 0 * * * * * 0 3380 0 1000 R 14 * * 4615 2885 * 4626 * * 1023 * * * * 4557 4143 4118 3106 5758 * * 14 0 * * * * * 0 3380 0 1000 E 15 4888 * 3828 1288 * 4050 * * 2542 * * 4318 * 4337 * 2694 * * * * 15 0 * * * * * 0 3427 0 1000 R 16 * * * * * 3453 6010 * 1485 * * 2975 * 3615 1687 5918 * * * * 16 0 * * * * * 0 3427 0 1000 V 17 3615 * * * * 5052 * 1998 3448 * * 4792 * * 3758 3162 2807 2461 * * 17 0 * * * * * 0 3427 0 1000 P 18 4792 * 5743 2755 * * * 5052 4151 4888 * 3742 1686 4393 3368 3953 4046 5518 * * 18 0 * * * * * 0 3427 0 1000 A 19 4683 5247 * * * * * 2697 * 3822 * * * * * * * 494 * * 19 0 * * * * * 0 3427 0 1000 S 20 4394 * 5247 5088 * * * 2665 4790 * 4580 3629 * * * 3340 1226 4213 * * 20 0 * * * * * 0 3427 0 1000 I 21 * * * * 4656 * * 980 * 4580 * * * * * 4646 * 1429 * * 21 0 * * * * * 0 3427 0 1000 Y 22 * * * * 1318 * 3303 3050 * * * * * * * * * * * 1408 22 0 * * * * * 0 3429 0 1000 L 23 * * * * 4783 * * * * 117 4594 * * * * * * * * * 23 0 * * * * * 0 3429 0 1000 V 24 4389 * * * * * * 3066 3822 2486 3987 4687 * * * 4772 4888 1282 * * 24 0 * * * * * 0 3429 0 1000 N 25 * * * * * * * * 4276 * * 674 * * 4888 2341 3467 * * * 25 0 * * * * * 0 3429 0 1000 G 26 * * * * * 0 * * * * * * * * * * * * * * 26 0 * * * * * 0 3429 0 1000 I 27 4389 * * 4594 2240 * * 2834 * 4625 * 4888 * * * * 4772 1410 * 3802 27 0 * * * * * 0 3429 0 1000 K 28 * * * * * * 4625 * 1626 4630 * * 5756 2104 1539 * * * * * 28 0 * * * * * 0 3429 0 1000 L 29 * * * * * * * 2189 * 742 3835 * * * * * 4791 3712 * * 29 0 * * * * * 0 3429 0 1000 Q 30 * * 4594 3409 * 4891 * * 2053 * 5721 * 4874 2458 2968 5527 3345 3227 * * 30 0 * * * * 0 * 3429 0 1000 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 3438 0 0 Q 32 * 5081 * 5070 4084 * * 3103 2276 3604 6039 * * 3413 2924 4259 5136 3090 * 4735 32 0 * * * * * * 3438 0 0 I 33 * * * * * * * 879 * 3861 * * * * * * * 1367 * * 33 0 * * * * * * 3438 0 0 E 34 5862 * 6081 2786 * * * 3854 2291 2668 * * * * 2622 5136 4238 2963 5640 * 34 0 * * * * * * 3438 0 0 S 35 1948 * 3901 * * 1936 * * * * * 4791 * * * 1682 * * 4691 5269 35 0 * * * * * * 3438 0 0 F 36 * * * * 684 * 4576 5070 * * * * * 4897 * 3578 4641 4890 * 3126 36 0 * * * * * * 3438 0 0 D 37 * * 0 * * * * * * * * * * * * * * * * * 37 0 * * * * * * 3438 0 0 Q 38 4126 * 3543 * * * * 4641 2241 4950 * 1713 * 2871 * 3352 4905 * * * 38 0 * * * * * * 3438 0 0 F 39 * * * * 735 * * * * * * * * * * * * * * 1325 39 0 * * * * * * 3438 0 0 V 40 * 2845 * * * * * 5556 * 5081 4784 * * * * 2270 1406 2403 * * 40 0 * * * * * * 3438 0 0 I 41 * * * * * * * 2170 * 3115 5862 * * * * * * 632 * * 41 59 4641 * 0 * * * 3438 1000 0 L 42 3956 * * * * * * 3103 * 635 3844 * * * * 4791 * 3851 * * 42 44 5070 * 0 * * * 3438 1000 0 L 43 * * * * * * * 2724 * 601 4056 * * * * * 4818 3414 * * 43 270 2549 * 1260 780 * * 3438 2026 0 K 44 * * 3960 1327 * * * * 3413 * * 4791 * * 2649 3217 3829 3840 * * 44 419 1988 * 207 2903 * * 3438 2455 0 N 45 * * 1737 2430 * 4576 * * * * 5895 2900 * 4181 * 2632 3250 * * * 45 116 3694 * 463 1865 * * 3438 1773 0 T 46 * * * 4267 * 1236 4576 4397 3148 * * 3552 3925 3836 5556 4361 5051 * * * 46 81 4200 * 3362 148 * * 3438 1490 0 V 47 5743 * * 4905 * 2711 4567 6025 1964 * 5862 3274 5269 3828 3041 5874 4784 3481 * * 47 0 * * * * * * 3438 0 0 S 48 5743 * 4605 * * 3806 * * 4203 * * 4243 3578 1213 5269 3520 3173 5473 * * 48 168 3188 * 428 1960 * * 3438 1895 0 Q 49 * * * * * * * * * 4605 * 4189 * 286 * * 3578 * * * 49 259 2605 * 0 * * * 3438 2231 0 M 50 * * * * 4890 5081 * 4905 * 466 2920 * * * * * * 4397 * * 50 0 * * * * * * 3438 0 0 V 51 * * * * * * * 1133 * 4605 * * * * * * * 991 * * 51 0 * * * * * * 3438 0 0 Y 52 * * * * 3366 * * * * * * * * * * * * * * 147 52 0 * * * * * * 3438 0 0 K 53 * * * * * * * * 0 * * * * * * * * * * * 53 0 * * * * * * 3438 0 0 H 54 5136 * * * * * 409 * * * * 4818 * 3840 3142 * * * * * 54 0 * * * * * * 3438 0 0 A 55 156 * * * * * * * 5136 * * 4704 * * * * 4818 * * * 55 0 * * * * * * 3438 0 0 I 56 * * * * * * * 365 * 3998 * * * * * * * 2635 * * 56 0 * * * * * * 3438 0 0 S 57 * * * * * * * * * * * * * * * 202 2933 * * * 57 0 * * * * * * 3395 0 0 T 58 * * * * * * * * * * * * * * * 4047 157 4546 * * 58 0 * * * * * * 3395 0 0 V 59 * * * * 3580 * * 498 * 4462 * * * * * * * 2616 * * 59 0 * * * * * * 3395 0 0 V 60 2923 * * * 4343 * * 2769 * 5582 3006 * * 4436 * 4276 2429 2039 * * 60 65 4506 * 1000 1000 * * 3197 1000 0 P 61 * * * * * * * * * * * * 253 * * 2995 4812 * * * 61 0 * * * * * * 2932 0 0 S 62 1492 * * 3323 * 2877 * * 4596 5178 * * * 3516 * 1987 * * * * 62 0 * * * * * * 2884 0 0 R 63 * * * * * 5600 3057 * 1530 * * 5117 * 5271 1727 2951 5220 * * * 63 0 * * * * * * 2815 0 0 P 64 * * * * * * * * * * * * 0 * * * * * * * 64 0 * * 0 * * * 2387 0 0 //