HHsearch 1.5 NAME c9gktB_ FAM FILE c9gktB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9gktB_.a3m DATE Sat Mar 1 08:36:02 2025 LENG 108 match states, 108 columns in multiple alignment FILT 115 out of 900 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.3 EVD 0.4623 1.0092 SEQ >ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCC CHHHHHCC >ss_conf 9388877899999999745999989999999984089360585348999999997498662188345788989999999999999999999999952665 44665249 >Consensus xxxxxxrGxlxiiLxlLxxxpxxGYeIxxxixxxxxxxxxixxgtiYxxLxrLexxGlIxxxxxrkxYxiTxxGxxxlxxxxxxxxxxxxxixxlxxxxx xxxxxxrx >c9gktB_ IPKEMLRAQTNILRNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGRKYYRLTEIGHENNRLAFEGWSRVDKIIENLEANKK SEAIKSRW >UniRef50_Q1IKX7(9-119:120) Transcriptional regulator, PadR family n=2 Tax=Acidobacteria RepID=Q1IKX7_ACIBL E=1e-15 s/c=0.76 id=18% cov=95% -SRDLFPGALEmMILESLRRQPAHGYALVQHIQQRSNNLLQVEEGSLYPALQRLLKGKLVKAEWtvssstnrRVRVYEITKAGLRHLEREISSFDRMLDG IQMVLGPAKREA----- >UniRef50_Q2G591(79-168:214) Transcriptional regulator, PadR family n=2 Tax=Sphingomonadaceae RepID=Q2G591_NOVAD E=7e-12 s/c=0.80 id=19% cov=81% ----------------VAQQPRHGYDLIRAVGELAGGEYAPSPGVVYPTLSLLVDEGLIAEEagdGPRKAFAATDAGRTELDGRSDELDAIVARLKALGD QGERSA----- >UniRef50_Q46FL8(25-130:131) Transcriptional regulator, PadR family n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q46FL8_METBF E=6e-07 s/c=0.52 id=16% cov=90% ----IIKKHLNIaVLCIIRNNSMSGQDIAKEIFYRFH--VYISPSAIYSILYSLKNQNLLEIDTIKgdlrtKYYILTEDGSQSIDKQIREFKEAAEYiie wIDNILSENPTD------ >UniRef50_C7Q622(3-111:111) Transcriptional regulator, PadR-like family n=13 Tax=Actinomycetales RepID=C7Q622_CATAD E=2e-16 s/c=0.80 id=23% cov=94% -STQLLKGVLDsAVLAVLVDEDGYGYDIVRRL--RVAGFEDIGDASVYGTLRRLYANGYLTSYvvpsesgPHRKYYGVNASGRAQLKESTATWRAFASSM DRLLGAERGERV---- >UniRef50_A4YGH7(12-106:151) Transcriptional regulator, PadR family n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YGH7_METS5 E=2e-11 s/c=0.73 id=20% cov=88% ------RGLRFVILFSLNESPKNGIEIMKEIESMTKGWWRPSPGSLYPMLAKMSQEGFIRRREDGK-YELTEIGKEEIEIIRQRMAMMSSFKESMRHEAS S------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 998 * 3890 1766 * * * * * * 2857 * * 1 0 * * * * * * 4126 0 0 P 2 * * 2468 * * 4442 * * 2224 * * * 2408 * 4268 1649 * * * * 2 0 * * * * * * 4559 0 0 K 3 3351 * * 4747 * * * * 2165 * * * * 3832 3227 2208 2010 * * * 3 0 * * * * * * 4988 0 0 E 4 * * 1941 1415 * * * * 4902 * * 3163 * 2648 * 4061 * * * * 4 0 * * * * * * 5129 0 0 M 5 3621 * * * 3908 * * 2264 * 1439 2962 * * * * * * 3144 4897 * 5 51 4850 * 0 * * * 5305 1000 0 L 6 * * * * 5005 * * 2030 3575 1457 4341 * * * 2603 4942 * * * 5089 6 53 * 4789 * * * * 5342 0 0 R 7 5555 * * * * * * * 1455 * * * 5218 4294 1069 5080 5050 * * * 7 0 * * * * * 0 5426 0 1000 A 8 4064 * * 3566 * 285 * * 4847 * * * * * * * * * * * 8 37 5309 * 0 * * 0 5485 1000 1000 Q 9 4431 * * * * * 2657 5402 * 3132 5129 * 5149 4941 * 2671 1900 3727 * 3889 9 30 * 5603 * * 0 * 5495 0 1000 T 10 5618 * * 5487 * * * 3463 * 1144 4360 * * * 4221 4392 2344 3893 * * 10 79 5298 5160 0 * * 0 5756 1000 1000 N 11 4229 * 2434 2068 4393 5398 * 4617 5716 5251 * 3238 5274 3187 * * 3572 5742 * 5553 11 440 1929 * 0 * 1047 955 5934 3914 1614 I 12 5349 4494 * * 3749 * * 2029 * 1654 3652 * * * * * * 2339 * 5900 12 117 3686 * 0 * 0 * 6259 3157 1000 L 13 5451 * * * * * * 1354 * 1927 5424 * * * * * 5760 1830 * * 13 61 4586 * 0 * * * 6461 2509 0 R 14 * * * * 6151 * * 6784 6551 225 8202 * * 6279 6444 6546 * 4176 * 5881 14 13 6819 * 1000 1000 * * 6497 1000 0 N 15 3034 5555 6889 5254 6011 1945 4761 4340 4199 3013 4796 5468 * 5480 5653 3323 5651 4463 7047 6851 15 0 * * * * * * 6497 0 0 V 16 4006 4805 * 4974 4381 6413 6832 3139 * 1262 4702 * * 4999 * 4132 5266 3268 * 6078 16 0 * * * * * * 6497 0 0 L 17 5576 6826 6558 * 6762 * * 2950 6202 598 * * * 5511 * 6901 7011 3203 * * 17 25 5891 * 1124 886 * * 6495 1593 0 K 18 2610 * 6857 3275 5397 5568 6741 5621 3275 3859 4270 4334 * 5363 3538 2411 6317 4343 * 5975 18 31 5544 * 538 1684 * * 6495 1724 0 Q 19 4978 * 3608 2188 6291 4257 5307 5743 2781 4027 5691 4767 * 3085 3718 4463 6747 5786 * 5148 19 73 4346 * 181 3085 * * 6499 2690 0 G 20 4427 * * 4074 * 1775 5887 * 2742 * * 3681 * 3197 2581 5102 4865 * 7024 6604 20 49 5349 6849 0 * * * 6525 2200 0 D 21 4922 * 2664 2817 * * * * 4841 * * 5642 1016 6385 4077 4423 * * * * 21 45 5014 * 0 * * 0 6574 2257 1000 N 22 3583 5516 * * * 4937 * 4549 3774 3329 2236 5031 * 4095 3561 2605 5090 5339 6715 4932 22 0 * * * * 0 * 6574 0 1000 Y 23 * 5718 * * 5564 * 1537 * 6293 * * 5451 * * 6054 3286 3075 * * 1542 23 0 * * * * * * 6584 0 0 V 24 3648 * * * * 384 * 6395 * 6655 * * 3714 6202 6843 * 6568 5447 * * 24 0 * * * * * * 6594 0 0 Y 25 5472 * * 6585 5336 * 5278 5868 * 5591 * 6712 * 5324 6726 4885 5924 6917 * 366 25 0 * * * * * * 6594 0 0 G 26 2955 * 2466 1424 * 4266 * * 3956 * 6788 * 6917 3539 4660 4501 * * * 6169 26 0 * * * * * * 6594 0 0 I 27 6056 * * * * * * 1066 * 1502 4262 * * * * * * 3292 * * 27 0 * * * * * * 6594 0 0 I 28 2826 6595 6889 5881 * 6464 5777 2426 3354 3834 3072 7158 * 4711 3148 4168 4301 4146 * * 28 0 * * * * * * 6594 0 0 K 29 4390 * 4475 3704 * 5752 * 6467 1827 5834 * 5323 * 2002 2552 4770 5679 * * * 29 0 * * * * * * 6594 0 0 Q 30 3149 * 4389 2702 4749 5588 6092 5062 4284 3162 5352 5325 * 4269 2618 4508 5579 6305 5360 4206 30 11 * 7022 * * * * 6594 0 0 V 31 4579 * * * 3633 * 6752 1537 * 1603 4314 * * * * * 6768 2978 * 6936 31 33 * 5458 * * * 0 6595 0 1000 K 32 5008 6712 3910 1658 6424 4324 * 6191 3113 5146 5046 5293 * 3989 2618 4608 6230 6293 * 6946 32 0 * * * * 1909 447 6597 0 2547 E 33 3537 * 4921 1665 6924 5091 5843 7083 3927 4724 * 4661 * 3318 3325 3799 4279 5317 * 6430 33 59 6380 5144 1000 1000 609 1538 6596 1000 2123 A 34 4658 6286 6980 4343 5093 6736 4512 4324 4311 2858 3863 5003 * 4801 2268 3434 4586 4903 5035 5152 34 124 * 3600 * * 2056 397 6573 0 2462 S 35 5564 * 5346 5429 3228 2633 5409 4319 * 4721 6689 4870 6139 * 4706 2401 2118 5108 * 7266 35 143 5429 3818 0 * 1277 768 6506 1715 4118 N 36 3843 * 3594 4025 5538 2521 4432 4400 3993 3377 6801 3390 5083 4757 * 3679 6703 5062 7005 4594 36 105 * 3829 * * 1291 758 6531 0 3982 G 37 7073 * 3283 4389 4370 1619 4172 6157 4562 4979 * 3572 4155 5722 5008 4944 5066 5965 * 4157 37 63 * 4538 * * 2256 339 6468 0 4530 E 38 4933 6756 4464 2847 2546 6804 6559 4233 4527 3571 6141 6354 * 4979 3098 4792 3975 3487 6531 5175 38 27 6521 7030 1585 585 696 1385 6504 1000 4696 M 39 6901 5517 * 6947 3229 4731 * 3406 6752 3259 5532 * 5101 6079 4108 4642 6522 2925 2282 3356 39 170 3282 6882 154 3303 226 2785 6538 3833 3352 E 40 5078 6905 3695 3213 6193 4437 5893 5885 2764 4623 * 3920 3466 5940 3299 3624 3926 4662 * 4850 40 14 * 6703 * * 951 1051 6584 0 1715 L 41 3970 * 5534 6644 4858 6128 * 1731 * 2668 5675 * 2684 * 6745 * 5294 2480 6950 * 41 25 6950 6811 1000 1000 0 * 6583 1000 1711 N 42 3469 * 3547 5098 * 3227 5210 * 3230 5864 * 3829 3765 5698 6944 1733 4503 5563 * * 42 13 * 6751 * * * 0 6587 0 1000 E 43 3745 * 3633 2645 4948 7097 3505 4625 4872 6595 5021 5256 2721 4092 4826 5216 3891 4650 6805 5233 43 11 6996 * 0 * 0 * 6575 1000 1633 A 44 3365 * * * * 807 * 6055 * * * 6547 6140 6651 * 2388 4115 4935 * * 44 12 6962 * 1585 585 * * 6593 1000 0 T 45 3241 * * * 6654 * 6749 6885 6607 5990 6301 6034 * 3760 * 1811 1438 3818 * 6203 45 0 * * * * * * 6593 0 0 L 46 6463 * * * 4176 6203 * 1808 * 1455 4634 * * * * * 6055 2223 * * 46 0 * * * * * * 6593 0 0 Y 47 * * * * 6650 * 6526 * * 6963 * 6394 * 6414 * 6224 * * * 98 47 0 * * * * * * 6593 0 0 T 48 3880 * 6691 7521 * 4093 4577 * 4387 6071 5620 5909 1414 5376 3423 3805 3239 4845 * 6405 48 0 * * * * * * 6593 0 0 I 49 1941 5659 * 3871 * * * 3165 6405 2419 5405 4960 * * 6679 * 2497 3345 * * 49 0 * * * * * * 6593 0 0 F 50 * * * * 5221 * * 3224 * 364 5601 * 6507 * * * 5887 5113 * 6405 50 0 * * * * * * 6593 0 0 K 51 5065 * 5067 4430 * 3917 4226 6140 1936 6951 * 4822 * 4174 2421 3647 4008 6716 * 4019 51 0 * * * * * * 6593 0 0 R 52 5257 * 5847 6881 5384 5946 6285 * 2343 5811 5990 3925 * 4122 1205 4086 5619 * 6679 5768 52 0 * * * * * * 6593 0 0 L 53 * * * * 5367 * * 6716 * 365 2534 * * * * * * * * 5881 53 16 6522 * 2585 263 * * 6593 1000 0 E 54 3874 6140 5463 1126 * * 6507 6924 3876 4025 * 5933 * 4820 4471 4724 4593 3265 * 7015 54 0 * * * * * * 6593 0 0 K 55 2935 * 3140 2670 * 5545 * 6852 2254 6592 5504 3978 * 4193 2755 4962 5138 * * * 55 0 * * * * * * 6593 0 0 D 56 3503 * 3141 2412 * 4318 4740 * 2567 6507 5998 3126 * 3410 4267 4156 * 6522 * * 56 0 * * * * * * 6593 0 0 G 57 6071 6260 5909 3947 * 568 5233 * 3906 * * 4248 * 4604 5107 * * * * * 57 0 * * * * * * 6593 0 0 I 58 5128 * * * 2871 * 6273 5501 * 1189 5016 * * 5755 6396 * * 5454 3190 2578 58 30 6879 6392 1585 585 * * 6579 1000 0 I 59 7086 * * * * * * 1184 * 2058 * * * 6501 * * 5864 1816 * * 59 197 2968 * 2599 260 * 0 6561 4189 1000 S 60 3738 * 3414 2075 * * * * 2808 6091 * 4992 * 5367 3572 3339 2726 4701 * 6931 60 133 3503 * 2388 306 * 0 6561 3893 1000 S 61 3929 * 4612 4803 5745 2700 * 5315 4638 6461 * 6334 6533 * 5353 1502 3673 3203 * 5594 61 98 3934 * 1859 465 * 0 6550 3348 1000 Y 62 5519 * 3576 2606 6542 4850 7042 5099 4893 * 6748 5109 * 5162 2423 3349 4211 5164 6758 2537 62 249 2658 * 2465 288 * 0 6619 4849 1000 W 63 6205 * 4920 3313 6959 3085 6206 * 6317 5222 4912 6065 2886 4203 2977 * 5383 5216 1994 7080 63 342 2295 7135 2670 247 * 0 6619 5131 1000 G 64 4746 * 2864 2568 * 2474 5857 5633 4339 * 6330 4631 2891 3557 3442 * 5688 7395 * * 64 432 1949 * 2760 230 743 1313 6547 5204 1496 R 65 6942 * * 5444 * 5091 5951 * 1926 * * 6392 6158 5123 853 * 6355 4657 * * 65 73 4780 6271 2208 352 * 0 6619 2696 1000 K 66 5865 * * 6182 * 7099 6217 5923 954 * * 5470 * 6141 2089 * 3461 4237 * * 66 77 5474 5097 2121 377 1214 814 6515 2100 1553 Y 67 4654 6973 6964 5674 4268 * * 3821 6808 3660 3993 6281 6154 6176 6070 5621 3952 2708 6714 1523 67 0 * * * * 419 1988 6523 0 2335 Y 68 6453 * * * 3941 * 5601 * * 6204 * * * * * * * 6194 * 192 68 0 * * * * 0 * 6633 0 1000 R 69 4093 * * 2851 * 5717 4350 4401 3953 * 6575 * * 3578 1984 2873 3288 6120 * 5467 69 0 * * * * * * 6635 0 0 L 70 5396 * * * * * * 1139 * 1380 4997 * 6536 * * * * 3383 * * 70 0 * * * * * * 6635 0 0 T 71 * * * 6114 * 6752 * * 5449 6639 * 4323 6396 * 5900 4232 301 * * * 71 0 * * * * * * 6635 0 0 E 72 3847 * 2110 1632 * 5513 7073 * 4909 6989 6879 6559 2509 * 5283 3825 6855 7361 * * 72 0 * * * * * * 6635 0 0 I 73 2187 * 4700 2675 * 5494 * 4875 2507 4692 6855 5150 * 4864 4830 3240 3672 7066 * 5926 73 0 * * * * * * 6635 0 0 G 74 6187 * * * * 79 * * 5900 * * * * * 6504 6396 * * * * 74 36 5940 6855 2428 297 * * 6635 1648 0 H 75 6570 7202 6348 3561 * 6714 6410 4345 2228 3438 5896 4836 * 3921 1757 6425 7026 4919 5847 5274 75 17 6427 * 3000 193 * 0 6627 1000 1000 E 76 2824 * 4677 1926 * 5960 6461 4788 2367 6953 * 4832 * 3632 3799 4635 4474 6535 * 7073 76 9 7286 * 2807 222 * 0 6614 1000 1000 N 77 2804 * 4869 3187 4267 * 5220 6729 4961 3301 4650 5285 * 3731 3814 6418 4387 3505 * 2925 77 0 * * * * 0 * 6614 0 1000 N 78 4592 * * 6578 2608 * * 4968 * 775 * 6339 * * 4751 * 7056 4440 * 3956 78 18 * 6366 * * * * 6693 0 0 R 79 3338 * 3309 2591 * 5268 5809 * 2646 5313 * 4915 * 3665 2277 5453 4862 6819 * 5568 79 0 * * * * * 0 6638 0 1000 L 80 3801 * 4249 1659 5721 5860 6483 5198 2881 3721 6717 4980 * 3733 3631 5743 4975 5315 * * 80 29 5632 * 1436 665 * 0 6554 1551 1000 A 81 3867 6710 6708 3232 4661 5400 4648 4872 3470 2535 5314 4244 5474 4605 3919 4561 5362 * 3080 6221 81 19 * 6235 * * * 0 6518 0 1000 F 82 3959 5232 5423 3928 6028 6691 * 2957 4322 2307 4247 * * 5048 2672 5976 4467 3690 5484 6205 82 0 * * * * 799 1233 6469 0 1551 E 83 3054 * 3550 1831 6533 6757 * * 3045 6583 6652 4697 6718 3701 3025 4165 5089 7142 * 6444 83 15 * 6633 * * * 0 6488 0 1000 G 84 3934 * 2755 1839 5929 5114 * 5266 3666 5660 6961 4109 5452 4586 4159 4335 4251 5381 * 5344 84 45 5014 * 3240 161 * 0 6651 1688 1619 W 85 4430 * * 6613 3343 * * 4653 6147 2604 4022 * 4697 * * 6553 * 6183 1257 3582 85 0 * * * * * 0 6628 0 1619 S 86 3415 * 3644 2257 5831 5483 6151 5406 3666 3617 6243 4793 6259 5101 2698 3738 4861 * 6279 6449 86 0 * * * * 789 1247 6609 0 1619 R 87 3681 5850 3890 3334 6240 6286 5271 5479 3319 5034 4575 6218 6354 4534 1798 3913 5557 4779 * 6569 87 18 6315 * 3170 170 0 * 6604 1000 1000 V 88 3672 * 5430 * 2965 * 6577 3344 6425 2185 4049 * 5260 6639 4330 * 3719 3153 6295 3601 88 39 6489 6025 0 * * * 6625 1000 0 D 89 3094 * 4807 5313 5332 * * 3977 3723 3385 5401 4127 4561 3982 4093 2897 3003 5145 6020 6122 89 15 6606 * 1000 1000 * 0 6595 1000 1000 K 90 2588 * 3420 3634 6076 5600 * 6497 2933 6582 6499 4854 4188 5111 2922 2574 4554 * * * 90 0 * * * * * 0 6595 0 1000 I 91 2400 6260 4988 5044 3715 4468 * 3852 6128 2639 4815 6771 * 6424 3713 3918 4126 3751 * 4642 91 20 6169 * 2000 415 0 * 6595 1000 1000 I 92 4051 * 6408 5039 6383 * * 1758 5254 2045 3183 * * * 4719 6549 * 2727 * 6435 92 33 5485 * 934 1069 * * 6625 1683 0 E 93 3665 * 2863 1886 * 4739 * 6336 3925 6295 * 3108 5970 3706 3633 3385 * * * * 93 0 * * * * * * 6607 0 0 N 94 4111 6765 4318 3502 4594 4905 3832 5323 3273 6898 6793 3218 6581 5210 2853 3958 2975 6050 * 6195 94 0 * * * * * * 6607 0 0 L 95 * * 6186 * 2385 6669 * 2582 * 1271 3882 * * * 6030 * 6166 3387 * 6501 95 0 * * * * * * 6572 0 0 E 96 5150 * 5595 2999 6052 6241 5959 3002 4334 2022 3559 5196 6360 * 3913 5831 * 2710 * * 96 26 5802 * 1585 585 * * 6575 1000 0 A 97 2636 * 2602 2543 * 3195 5864 * 3787 5847 * 3968 4911 4909 4474 4418 5092 4835 * * 97 0 * * * * * * 6532 0 0 N 98 3915 * 5202 2266 5989 1567 * * 6136 5641 * 4150 3983 6136 4869 4510 4250 * * 4423 98 0 * * * * * * 6554 0 0 K 99 2018 * 5598 3455 5999 3718 5919 5555 2309 3808 * 4764 * 4172 3774 5592 5485 5052 * * 99 0 * * * * * * 6422 0 0 K 100 4387 * 4142 2350 5653 5659 * 4461 2932 5934 * * 1964 * 2877 5281 5460 5255 * * 100 0 * * * * * * 6220 0 0 S 101 2042 * 3620 5427 * 5512 * * 5308 5402 * 5116 5467 4213 4455 1684 3290 5840 * * 101 0 * * * * * * 6076 0 0 E 102 3817 * 2973 1485 * * * * 3519 3898 4963 * * 3025 4505 5147 5005 * * 4975 102 0 * * * * * * 5812 0 0 A 103 1007 * 4505 * 4611 2402 * * * * * * 3570 4367 4524 * 4259 * * * 103 0 * * * * * * 5235 0 0 I 104 * * * 3914 3854 3894 * 1962 3990 3709 3026 * * * * * * 1845 * * 104 0 * * * * * * 4782 0 0 K 105 3591 * 2425 2471 * * * * 2461 2450 * * * 3511 3346 * * * * * 105 0 * * * * * * 4384 0 0 S 106 2426 * 3509 * * * * * * 3650 * 3401 * * 1902 2445 3313 * * * 106 0 * * * * * * 4384 0 0 R 107 * * 3265 * * * * * * * * * * * 358 3112 * * * * 107 0 * * * * * * 3966 0 0 W 108 * * * * * * * * * * * * * * * * * * 0 * 108 0 * * 0 * * * 2125 0 0 //