HHsearch 1.5 NAME c9fy2Z_ FAM FILE c9fy2Z_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9fy2Z_.a3m DATE Sat Jan 17 10:50:43 2026 LENG 61 match states, 61 columns in multiple alignment FILT 101 out of 139 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4451 0.8879 SEQ >ss_pred CCEEECCCCCCCCCCEEEEECCCCCCEECCCEEEEEEEECCEEEEEEEEEEECCCCCEEEC >ss_conf 9431011678742550442065558657565359999879958999998101011314659 >Consensus srxCxitGKxxxxGnxvShsxxkTkRxxxpNlqxxrxxxxgxxxxlxvstxxLrtxkvxxv >c9fy2Z_ ARKCVITGKKTTAGNNRSHAMNASKRTWGANVQKVRILVNGKPKKVYVSARALKSGKVERV >UniRef50_D1CCP4(3-64:73) Ribosomal protein L28 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCP4_THET1 E=1e-08 s/c=0.98 id=25% cov=90% --RCEVCGKKTQFGRSIQYHHggkwarraQKTNRPFKPNVHRQTVMLNGELVKIHICTRCLRTL----- >UniRef50_B7FY86(15-73:89) Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FY86_PHATR E=2e-05 s/c=0.85 id=32% cov=92% SRRGLYDGKDVRTGNNVSFSMRATKRTFKPNVMIKRVYSEilDEMVKFHLTTSTLRS------ >UniRef50_C4QZ93(66-126:248) 54S ribosomal protein L24, mitochondrial n=1 Tax=Pichia pastoris GS115 RepID=C4QZ93_PICPG E=6e-05 s/c=0.80 id=29% cov=80% -------GQFLQFGNKISEFKNKNGRKWSLNVHTKSLWSEilNKSIRVKLTARVLRT------ >UniRef50_P48129(2-64:70) 50S ribosomal protein L28, cyanelle n=4 Tax=Eukaryota RepID=RK28_CYAPA E=1e-08 s/c=0.97 id=34% cov=102% ARQCELTGKKANNGYTVSHSHRRTKCLQKANLQTKRIWSPtlKRWLKLQVSTKVIKDLKRKSI >UniRef50_D1N9H5(2-74:75) Ribosomal protein L28 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9H5_9BACT E=1e-05 s/c=0.70 id=31% cov=100% SKFCEMCGKGKAHGGCITrkglakkaggigmHVVKNVKRTFEANLQNVRINEGGTVKTVKMCVRCIRTGNFTK- >UniRef50_B9XT04(2-74:88) Ribosomal protein L28 n=1 Tax=bacterium Ellin514 RepID=B9XT04_9BACT E=1e-05 s/c=0.70 id=33% cov=100% ARICELTGTGPIKGSHIwrsgkakkkggigTHVTAITKRRFMPNLQRVKAVINGEVRYIRVTASAIKKGLVVK- >UniRef50_B0SXP0(2-62:101) 50S ribosomal protein L28 n=26 Tax=Alphaproteobacteria RepID=RL28_CAUSK E=9e-13 s/c=1.22 id=25% cov=98% SRRCELTGIGPMVGHNVSHSNIKTKRRFLPALSPASLQSDslGQTFKLRISNAALRTLDFR-- >UniRef50_UPI000150AA2C(60-119:289) ribosomal protein L28 containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI000150AA2C E=3e-07 s/c=0.94 id=23% cov=92% SQKGLFHGKQPKTGLQTCFSEKKSIRWWKVNVHEKYLWSDILQKKIRIqmSSKTLRT------ >UniRef50_D2R413(2-75:92) Ribosomal protein L28 n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R413_9PLAN E=1e-05 s/c=0.69 id=31% cov=100% AYTCEFCDKRASRGNQVETRGKAkylggvgtkitgiTRRQFKPNLQSVKItTPNGTNTTVRICTRCLKAGMVRK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 1145 * * * * * * * * * * * * * * 936 5310 * * * 1 0 * * * * * * 4507 0 0 R 2 4398 * * * * * * * 1781 * * 5022 * 3183 1083 5687 * * * 5098 2 0 * * * * * * 4601 0 0 K 3 6252 * * 3994 4682 * 6461 3696 2475 6131 * * * 5592 1511 6103 4943 2443 * * 3 0 * * * * * * 4659 0 0 C 4 * 263 3810 * * 3624 * * * * * * * * 6113 * * * * * 4 0 * * * * * * 4669 0 0 V 5 4586 * 2401 1938 * 6018 6000 * 6411 3347 5323 * 4278 2684 * 6162 5373 5267 * 3817 5 0 * * * * * * 4676 0 0 I 6 * 6537 * * 3107 * 6493 1647 * 1735 5096 * * * * 6740 * 2659 5796 5187 6 0 * * * * * * 4676 0 0 T 7 4945 1723 6150 * 6498 5174 4706 * * 4097 * 6740 * * * 4889 1083 * * * 7 0 * * * * * * 4676 0 0 G 8 * * 4256 * 6027 201 * * * 5440 * 6095 * 6049 6720 * * * * * 8 0 * * * * * * 4837 0 0 K 9 4572 * * 6118 * * 6517 5493 483 * * * * 6189 3182 5413 5162 5684 * * 9 15 6616 * 0 * * * 4837 1000 0 K 10 5171 * 4323 5781 5224 1680 5661 * 1932 * 5017 6538 * 5016 3434 4046 4107 * * * 10 0 * * * * * * 4781 0 0 T 11 3316 6253 5540 * * * * 3294 3684 5396 * 5563 1517 * 6839 5779 2942 3029 6460 * 11 0 * * * * * * 4781 0 0 T 12 3934 * * 6680 * 4878 5122 3748 4200 3071 3451 3191 * 2900 3835 3779 4412 3484 * * 12 14 6724 * 0 * * * 4781 1000 0 A 13 5345 * * * 1666 * 4469 5015 5106 6350 * 3679 * * 4468 2972 3314 3121 * 3707 13 32 5525 * 0 * * * 4785 1360 0 G 14 3346 * * * * 203 * * * * * * * * * 4922 * * * * 14 21 6115 * 2000 415 * * 4798 1000 0 N 15 6495 5447 5806 * 6282 4684 3304 * 4906 5970 * 779 * 6358 3997 5607 * 6765 6675 4357 15 0 * * * * * * 4798 0 0 N 16 4782 5911 * * * * 6497 5768 2608 5773 6474 1389 * 2992 4515 3501 3883 5914 * * 16 0 * * * * * * 4798 0 0 R 17 * * * 7198 * * * 2229 * * * * * * 2636 5806 5101 875 * 5226 17 46 5008 * 3700 115 * * 4798 1803 0 S 18 4901 5101 * 6464 * * * * * * * * 5699 4907 6592 368 3743 6224 * * 18 63 4549 * 3604 124 * * 4798 2163 0 H 19 * * 6169 4061 2655 * 734 * 3626 * * * * 6115 5659 6126 6464 * * 5312 19 42 5109 * 1636 560 * * 4798 1778 0 A 20 2587 * 6126 * 6236 4314 6343 5740 6811 * * * * * 4457 735 * 3847 * * 20 0 * * * * * * 4798 0 0 M 21 5858 * 6973 4683 * 3479 2355 * 3275 3949 3612 2089 * 5179 4263 6115 4181 5911 * * 21 51 4853 * 3023 189 * * 4798 2104 0 N 22 5537 * * * * 4949 3980 3436 2605 * * 2030 6592 4837 1845 * 4826 5493 * * 22 68 4444 * 725 1341 * * 4798 1732 0 A 23 3033 * * * * * 4578 5021 1034 6706 * 5292 * 5363 2344 5534 5138 6593 * * 23 32 5521 * 3700 115 * * 4798 1559 0 S 24 * 6214 * * * * * 5339 * * * 3768 * * 6473 2728 495 5911 * * 24 0 * * * * * * 4798 0 0 K 25 5786 * * * * 5558 4244 5970 1090 * * 3348 6126 * 1735 6743 * * * * 25 0 * * * * * * 4798 0 0 R 26 * 5547 * * * * 6659 * 3316 * * * * * 242 * 5479 * * * 26 0 * * * * * * 4798 0 0 T 27 4950 * * * * * 6811 3896 3364 5097 4794 * 6343 4903 1609 4391 2532 3664 4450 6591 27 0 * * * * * * 4798 0 0 W 28 * * * * 1306 * * * * * * * * 2874 * 6485 * 6048 1208 * 28 0 * * * * * * 4798 0 0 G 29 6869 * 4848 4376 4718 6004 6820 6695 1654 2794 3903 3495 6758 4763 3264 5001 * 6412 * 5276 29 0 * * * * * * 4798 0 0 A 30 4517 * * * * 6495 * 5844 * 4058 * * 590 * 6169 6115 6066 2644 * * 30 0 * * * * * * 4798 0 0 N 31 5445 * * * * * * * * * * 33 * * * * * * * * 31 0 * * * * * * 4798 0 0 V 32 6467 * * * 5756 * 6477 2865 * 795 * * * * * 6674 * 2085 * * 32 16 6516 * 1000 1000 * * 4798 1000 0 Q 33 * 6399 * * 5790 * 2734 5314 4368 6214 6736 * * 810 3428 5445 * 4752 * * 33 13 6818 * 1000 1000 * * 4798 1000 0 K 34 6214 * 6177 4750 7268 * 6458 6736 1733 6758 * 4215 4554 6577 2590 3033 3216 5760 4558 4859 34 0 * * * * * * 4798 0 0 V 35 4760 6605 * 5509 5659 * 4961 4269 1419 6495 5738 * * 4861 4903 6177 6706 1591 * * 35 0 * * * * * * 4798 0 0 R 36 5040 * * 6458 * 5708 6412 * 2028 6901 * * * * 1228 4397 2760 5970 * 4806 36 59 4642 * 458 1879 * * 4798 2117 0 I 37 3428 * * * 3239 * * 2003 * 2058 * * * * 6407 6213 5948 2274 * 3980 37 113 3729 * 150 3336 * * 4799 2924 0 L 38 7160 * * 4871 4060 * 5762 4469 4262 3207 5117 5430 5689 4359 5822 * 3559 3745 2256 2571 38 99 3914 * 734 1326 * * 4799 2555 0 V 39 * * * 2714 6587 6863 * 3079 * 4683 * * 4188 * * 1550 4515 2308 5099 * 39 84 4147 * 505 1759 * * 4799 2573 0 N 40 4067 * 1807 2180 * 5388 * * 5070 5147 * 2435 3012 6512 * 5424 6815 * * * 40 554 1649 * 1000 1000 * * 4799 3784 0 G 41 5549 * 3240 4269 * 782 * 4774 5074 * * 2983 * * 6588 4782 * * * * 41 55 4734 * 808 1221 * * 4799 2487 0 K 42 6163 5612 * 2591 * 4592 6175 * 3021 5152 6573 6725 * 3457 2025 4135 2758 5656 * 6419 42 30 5623 * 1000 1000 * * 4799 1000 0 P 43 4976 * 6166 4775 4022 * 7058 4973 3095 5183 5589 4102 3226 4801 3792 3789 3114 3758 3510 5113 43 0 * * * * * * 4799 0 0 K 44 * 6217 * * 4068 * * 2071 2400 4470 * * * 4431 3164 * 5150 2012 * 5623 44 96 3962 * 796 1238 * * 4799 2288 0 K 45 * * 6554 * * 6441 5342 * 1561 * * 5110 6460 5285 1786 4739 2543 5142 * 5579 45 0 * * * * * * 4799 0 0 V 46 4486 * * * 4659 * * 2438 6722 1395 3385 * * * * * * 2025 * * 46 17 6392 * 1000 1000 * * 4802 1000 0 Y 47 * * 6586 * * * 4586 * 1673 5207 * 3785 * 5839 1504 4325 5048 * 5481 4009 47 0 * * * * * * 4802 0 0 V 48 4440 * * * * * * 2385 * 2450 4797 * * * * * * 879 * * 48 24 5941 * 1000 1000 * * 4802 1000 0 S 49 5352 1727 * * * * * * * * * 5622 * * * 1213 2173 * * * 49 0 * * * * * * 4802 0 0 A 50 1504 * * * * * 5497 * * 6094 * 5438 6173 * 6674 4640 1121 3965 * * 50 0 * * * * * * 4802 0 0 R 51 3625 * * * * * 4297 * 1564 * * 6514 * 5243 1559 2892 * * * 5758 51 0 * * * * * * 4802 0 0 A 52 1911 1795 6334 * * 2846 * * * * * * * * * 6057 2513 3261 * * 52 0 * * * * * * 4789 0 0 L 53 * * * * * * * 1872 5960 634 3915 * * * * * * * * * 53 0 * * * * * * 4789 0 0 K 54 5449 * * * * * * * 1192 * * * * * 946 5621 * * * * 54 26 5791 * 1000 1000 * * 4789 1000 0 S 55 2821 * 5111 * * 6366 * * 4972 * * * 5462 * * 2153 894 * * * 55 21 6130 * 2000 415 * * 4690 1000 0 G 56 5050 * * * 5569 1144 * 2556 * 1616 * * * * * * * * * * 56 0 * * * * * * 4253 0 0 K 57 5965 * 4081 * 4829 5007 5657 * 782 3639 5400 4179 * * 3645 5779 * * * * 57 0 * * * * * * 4275 0 0 V 58 5452 * * * 3157 4824 * 4197 3057 * * * * * 4893 * 4400 801 * * 58 0 * * * * * * 3981 0 0 E 59 5478 * * 1898 * * * * 2573 5023 * * * 2447 2999 * 4030 2829 * * 59 0 * * * * * * 3981 0 0 R 60 * * * * * * * * 1179 * * 4368 * 5040 1311 4410 5080 * * * 60 0 * * * * * * 3737 0 0 V 61 * * * * * * * 3114 * * * * * * * * * 177 * * 61 0 * * 0 * * * 2952 0 0 //