HHsearch 1.5 NAME c9fy0Y_ FAM FILE c9fy0Y_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9fy0Y_.a3m DATE Sat Jan 18 11:01:55 2025 LENG 67 match states, 67 columns in multiple alignment FILT 20 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4645 1.9551 SEQ >ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEHEECCCCEEECCEEEEECCCHHHHCC >ss_conf 9540003899999984136657079999998708544502000014971226487760014241079 >Consensus xxexxxxxAxVikVlgrtGxxGxxtQVrvxxlxgxdxxrxixRNVkGPVrxGDIlxLxEtErEarrl >c9fy0Y_ IIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDILILRETEREARKI >UniRef50_Q3IPM8(13-72:75) 30S ribosomal protein S28e n=24 Tax=Archaea RepID=RS28_NATPD E=1e-12 s/c=1.23 id=57% cov=91% -------PAEVIEVVGETGMHGEAMQVKCRIQEGENQGRIIARNVLGPVRVGDVIQLRETAREADSI >UniRef50_D2EFI9(23-84:85) Ribosomal protein S28e n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFI9_9EURY E=1e-14 s/c=1.31 id=59% cov=94% -----AYPSEVIEIVGRHGVAGEVTQVRCKVLAGMDKDKIIRRNVRGPVVIGDVLMLKETEMEAMPI >UniRef50_C7DI36(25-88:91) Ribosomal protein S28e n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI36_9EURY E=3e-14 s/c=1.24 id=52% cov=94% -----GFLAEIVEVnrVSKTGMYGEVYSVTCRILEGKDKGRIIRRNSIGPIKIGDIIRLPDTSREAREI >UniRef50_Q5CTI4(6-67:68) 40S ribosomal protein S28, no good start Met (Fragment) n=2 Tax=Cryptosporidium RepID=Q5CTI4_CRYPV E=1e-11 s/c=1.15 id=59% cov=91% -------LAKVEKILGRTGSRGGVIQVRVQFMSGESElaGRSLIRNVRGPVREGDILALLETEREARRL >UniRef50_Q3LVV1(13-64:65) Ribosomal protein S28 n=1 Tax=Bigelowiella natans RepID=Q3LVV1_BIGNA E=1e-05 s/c=0.98 id=53% cov=79% ----------VTKILKKVGKRGQGTQVRVKSITNIKK--TLIRNIKGPVRIGDIVLLKESEREA--- >UniRef50_A8DYY3(9-59:76) CG34182 n=11 Tax=Sophophora RepID=A8DYY3_DROME E=0.0001 s/c=0.93 id=46% cov=78% --------ARVIKILNRIGARGILTEVRVQLVDQPKM--QFMRTVKGPVRLGDIVDFEDTE------ >UniRef50_Q4CXV7(52-118:119) 40S ribosomal protein S33, putative n=6 Tax=Trypanosoma RepID=Q4CXV7_TRYCR E=8e-13 s/c=1.12 id=55% cov=87% ----------IIKVLGRTGSRGNVTQVRVRLMAeegSPDANRTIVRNVKGPCKEGDMLSLMETEREARRL >UniRef50_UPI0000E1F04D(228-285:286) PREDICTED: similar to 40S ribosomal protein S28 n=2 Tax=Pan troglodytes RepID=UPI0000E1F04D E=9e-13 s/c=1.29 id=39% cov=85% ---------RVTKLLGRTGSKGQWSQVCMEFME--DASCSIIHNVKGPVYEGDVLTLLQSEPEVGRL >UniRef50_Q8SQM2(3-63:65) 40S RIBOSOMAL PROTEIN S28 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQM2_ENCCU E=5e-11 s/c=1.13 id=45% cov=93% --EQQEFFGEVTHVLGRTGGSGLLTQVKMELMHNK---RTIQRAVKGPVAVGDIIEILECEREHRR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 0 * * * * * * * * * * * * 1 0 * * * * * * 1120 0 0 I 2 * * * * * * * 0 * * * * * * * * * * * * 2 0 * * * * * * 1120 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 1609 0 0 E 4 * * 2101 1164 * * * * * * * * * 1641 * * * * * * 4 0 * * * * * * 1609 0 0 F 5 * * * 2101 2191 * * 2137 * * * * * 1641 * * * * * * 5 0 * * * * * * 1609 0 0 G 6 2651 * * 2322 * 642 * * * * * * * * * * * * * * 6 0 * * * * * * 2017 0 0 F 7 * * * * 689 * * * * * * * * * * * * * * 1398 7 0 * * * * * * 2017 0 0 P 8 3558 * * * 2628 * * * * 1711 * * 1159 * * * * * * * 8 0 * * * * * * 2453 0 0 A 9 246 * * * * 3686 * * * * * * * * * 3661 * * * * 9 0 * * * * * * 2614 0 0 E 10 * * * 1043 * * * * 2900 * * * * * 1393 * * * * * 10 0 * * * * * * 2683 0 0 V 11 * * * * * * * 2374 * * * * * * * * * 309 * * 11 0 * * * * * * 2780 0 0 I 12 * * * 4584 * * * 1114 * * 3371 * * * * * 1969 2792 * * 12 0 * * * * * * 2780 0 0 Q 13 * * 3006 2059 * * 4120 * 1099 * * * * 3786 4684 * * * * * 13 0 * * * * * * 2780 0 0 I 14 * * * * * * * 1510 * 3865 * * * * * * * 785 * * 14 121 3630 * 1000 1000 * * 2780 1000 0 L 15 * * * * * * * 2844 * 603 * * * * * * * 2305 * * 15 0 * * * * * * 2780 0 0 D 16 * * 4858 * * 425 * * 4056 * * 3645 * * * 3630 * * * * 16 0 * * * * * * 2780 0 0 R 17 * * * 4002 * * * * 2309 * * 3974 * * 573 * * * * * 17 0 * * * * * * 2780 0 0 T 18 * * * * * * 4080 3645 * * * * * * * * 440 3015 * * 18 0 * * * * * * 2780 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 2780 0 0 V 20 2800 * * * * 4120 * * 4056 * 2274 * * * * 1463 4732 2925 * * 20 0 * * * * * * 2780 0 0 T 21 4080 * * * * * 2608 * 3865 * * * * 3920 1212 4120 3794 * * 3630 21 0 * * * * * * 2780 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 2780 0 0 E 23 * * 4732 1563 * 2501 * 3645 * 3046 * 4283 * 2360 * * * * * * 23 0 * * * * * * 2780 0 0 V 24 2988 3920 * * 3975 4056 * 4038 * 2863 * * * * * * * 1261 3865 * 24 0 * * * * * * 2780 0 0 T 25 * * * * * * * 3650 * * 4002 * * * * 2918 633 * * 3630 25 0 * * * * * * 2780 0 0 Q 26 * * * 2800 * * * * * * * * * 366 * 3630 * * * * 26 0 * * * * * * 2780 0 0 V 27 * * * * * * * 3974 * * * * * * * * * 95 * * 27 0 * * * * * * 2780 0 0 R 28 * 3865 * * * * * * 2371 * * * * 3974 752 * 3630 * * * 28 0 * * * * * * 2780 0 0 V 29 * 1911 * * * * * * * * 2987 * * * * * * 718 * * 29 0 * * * * * * 2780 0 0 R 30 * * * 1600 * * * * 3068 * * * * 3039 1441 * * 4038 * * 30 0 * * * * * * 2780 0 0 V 31 * * * * 1997 * * 2468 * 1675 * * * * * 4056 * 2357 * * 31 0 * * * * * * 2780 0 0 L 32 * * * * * * * 3047 * 1158 1794 * * 4002 * * * 3645 * * 32 0 * * * * * * 2780 0 0 E 33 3178 * 2745 1249 * 4803 4120 * 3975 * * * * * * 3286 4056 * * * 33 435 4283 2259 1585 585 * * 2780 1000 0 G 34 * * * * 3674 736 * * * * * 2679 * 3453 * 3756 * * * * 34 0 * * * * * 0 2696 0 1445 R 35 * * * 2856 * * * 3662 2014 * 3737 * 2037 * 2206 * * * * * 35 116 * 3697 * * 0 * 2696 0 1445 D 36 * * 823 3248 * * * * 2764 * * 3941 * * 3754 4537 * * * * 36 0 * * * * * 0 2737 0 1000 K 37 3015 * * 3274 * * * * 1395 * 2687 * * 2937 * * 3227 * * * 37 435 4581 2196 1000 1000 * 0 2759 1000 1000 G 38 * * 3525 * * 909 * * * * * 3141 * 4780 * 2116 * * * * 38 0 * * * * 1875 459 2374 0 1857 R 39 * 3517 * * * * * * 3613 * * * * * 267 * * * * * 39 0 * * * * 0 * 2471 0 1654 I 40 * * * * * * * 2118 * * * * * 2096 * 2516 2148 2886 * * 40 0 * * * * * * 2800 0 0 L 41 * * * * 3659 * * 734 * 1646 * * * * * * * * * * 41 0 * * * * * * 2800 0 0 T 42 4046 * * * * * * 1494 * 3995 3659 * * 4177 2531 * 2920 3609 * * 42 0 * * * * * * 2800 0 0 R 43 * * * * * * 3889 * 3995 * * * * * 201 * * * * * 43 0 * * * * * * 2800 0 0 N 44 3083 * * * * * * * * * * 317 * * * * 3659 * * * 44 0 * * * * * * 2800 0 0 V 45 * 4008 * * * * * 4082 * * * * * * * 3655 * 323 * * 45 0 * * * * * * 2800 0 0 K 46 * * * * * * * 3655 742 3364 5091 * * * 2899 * * 4008 * * 46 0 * * * * * * 2800 0 0 G 47 * * * * * 0 * * * * * * * * * * * * * * 47 0 * * * * * * 2800 0 0 P 48 4109 * * * * * * * * * * * 86 * * * * * * * 48 0 * * * * * * 2800 0 0 V 49 * 3236 * * * * * 3655 * * * * * * * * * 296 * * 49 0 * * * * * * 2800 0 0 R 50 4177 * * * * * * * 2596 * * * * * 611 * * 4131 * 3889 50 0 * * * * * * 2800 0 0 V 51 * * * 1983 * * * 1765 5091 2486 * * * * * * * 2029 * * 51 0 * * * * * * 2800 0 0 G 52 * * 4723 * * 107 * * * * * 4887 * * * * * * * * 52 0 * * * * * * 2800 0 0 D 53 * * 0 * * * * * * * * * * * * * * * * * 53 0 * * * * * * 2800 0 0 I 54 * * * * * * * 621 * * 4375 * * * * * 5091 1878 * * 54 0 * * * * * * 2800 0 0 L 55 * * * * * * * 1955 * 818 * * * * * * * 2516 * * 55 0 * * * * * * 2800 0 0 I 56 4628 4723 2817 2810 * * * 3231 * 4082 3068 * * 4046 3655 4375 2938 4887 * * 56 0 * * * * * * 2800 0 0 L 57 * * * * 3659 * * 3083 * 317 * * * * * * * * * * 57 0 * * * * * * 2800 0 0 R 58 * * * 3659 * * * * 2483 1616 2562 * 3655 * 2581 * * * * * 58 0 * * * * * * 2800 0 0 E 59 * * 2176 492 * * * * * * * * * 3889 * * * * * * 59 0 * * * * * * 2800 0 0 T 60 * 2675 * * * * * * * * * * * * * 1850 821 * * * 60 0 * * * * * * 2751 0 0 E 61 3986 * * 341 * * * * * * * * * * * 2763 * * * * 61 0 * * * * * * 2751 0 0 R 62 * * * * * * * * * * 3741 * 3547 * 252 * * * * * 62 0 * * * * * * 2546 0 0 E 63 * * * 0 * * * * * * * * * * * * * * * * 63 0 * * * * * * 2546 0 0 A 64 262 * * * * * 3639 * * * * * * * * * * 3547 * * 64 0 * * * * * * 2546 0 0 R 65 * * 3672 * * 3508 * * 3723 * 3553 * * * 572 * * * * * 65 0 * * * * * * 2456 0 0 K 66 * * * 2749 * * * * 2975 * * * 3553 * 835 3672 * * * * 66 0 * * * * * * 2456 0 0 I 67 * * * * * * * 1351 * 718 * * * * * * * * * * 67 0 * * 0 * * * 2371 0 0 //