HHsearch 1.5 NAME c9fwvT_ FAM FILE c9fwvT_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9fwvT_.a3m DATE Sat May 10 10:00:37 2025 LENG 86 match states, 86 columns in multiple alignment FILT 69 out of 71 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.3818 -1.1035 SEQ >ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEECCC >ss_conf 98899999999997898779965588865766544467788989899999999999868998289999819874389999876588 >Consensus lxxxixxQVxxllxqGxxixxExadxrrxrxxxWxxxpxxxxxxxxxVlxelxxcxxxxpxxYVRligxDxxxkxrxxxxivqRPx >c9fwvT_ LSSEVITQVRSLLNQGYRIGTEHADKRRFRTSSWQPCAPIQSTNERQVLSELENCLSEHEGEYVRLLGIDTNTRSRVFEALIQRPD >UniRef50_P05348(70-166:170) Ribulose bisphosphate carboxylase small chain, chloroplastic n=25 Tax=Embryophyta RepID=RBS_MAIZE E=3e-05 s/c=0.51 id=21% cov=99% -TDDLLKQVDYLLRNGWIPCLEFSKvGFVYRENSTSPCyydgrywtmwklPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKP- >UniRef50_B4WNX1(635-719:872) Ribulose bisphosphate carboxylase, small subunit, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNX1_9SYNE E=1e-25 s/c=1.38 id=41% cov=100% IDATVMDQVTQLINQGHKISIEYADKRRYRSGIWKTGPAIDARRPAEAISALGKQLAQHNNDYVRLVGVDPNVKRRVVELTIQRP- >UniRef50_P22860(28-112:113) Ribulose bisphosphate carboxylase small chain 2 n=2 Tax=Allochromatium vinosum RepID=RBS2_CHRVI E=1e-21 s/c=1.22 id=27% cov=97% ---EILEQILYILDNGWNASLEHEHPDRAFEYYWPmwKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP- >UniRef50_P16881(301-405:1273) Ribulose bisphosphate carboxylase small chain P8, chloroplastic n=21 Tax=cellular organisms RepID=RBS_EUGGR E=1e-25 s/c=1.11 id=24% cov=100% -DAQIAKQVDMIIAKGLSPCLEFAAPensfiandntvrfsgtaaGYYDNRYWTmwKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF VVQRPS >UniRef50_O30711(230-314:661) Carbon dioxide concentrating mechanism protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=O30711_SYNP2 E=2e-21 s/c=1.21 id=37% cov=100% LNGDLYNQVRGLAAQGCTFTAEYANKRRFKTKSWLSAGFVEGHSADQIIGNLNRVLADHAGEYVQLIAVAPNSKSRAAEIVVQRP- >UniRef50_B4WNX1(500-581:872) Ribulose bisphosphate carboxylase, small subunit, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNX1_9SYNE E=1e-17 s/c=1.11 id=31% cov=97% ---EVAQAVGRIIRSGNHVGVEFADKRRYRSGIWQTAPSINASSESAAVNQLQRFLDQNADKYVRIFGVNIQTKTRGAATTIHKP- >UniRef50_Q2JX50(323-407:407) Ribulose bisphosphate carboxylase/oxygenase activase n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JX50_SYNJA E=2e-24 s/c=1.33 id=41% cov=100% LNPDVQAQLRQILAQGYEILVEHADPRRYRVHSWQECGVAHLREWAAACQAVEQCLSRFPKDYIRLVGVDPVKKQRRVEAIIHRP- >UniRef50_Q52Z06(16-104:117) Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=88 Tax=Phaeophyceae RepID=Q52Z06_9PHAE E=2e-22 s/c=1.19 id=22% cov=100% -DEQIKKQVAYAMTKGWAVSVEWTDDPHPRNSYWElwGLPLFDIQDPAALMYELGECRKVNPEGYIKINAFDASigTESCVLSFIVQRPS >UniRef50_C5SC11(40-118:119) Ribulose bisphosphate carboxylase small chain n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SC11_CHRVI E=9e-13 s/c=0.95 id=26% cov=91% -------QLEHCLHRGCIIAIEHAERVQAAYTAWEPWEPPSCysGDMAAVHGAIARCRQAHCDHHIRLSVEDVSYHSR-LALMVHRP- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 3050 * 186 * * * * * * * * * * 1 0 * * * * * * 2898 0 0 S 2 5565 * 1045 4759 * * * * 4716 * * 3283 4787 * * 2635 3068 * * * 2 0 * * * * * * 4235 0 0 S 3 2423 * 3148 2824 * 4128 * * 4992 4130 * 6225 2998 2724 * 3194 6111 * * * 3 0 * * * * * * 4241 0 0 E 4 * * 1927 1632 * 5077 * * * * * 6017 * 1929 * 3443 6069 * * * 4 0 * * * * * * 4466 0 0 V 5 4995 * * * * * * 1295 * 2767 * * * * * 6175 4633 1474 * * 5 0 * * * * * * 4514 0 0 I 6 2194 * * 3801 * * * 4892 5397 3985 5077 * * 3204 5202 4063 3886 1977 * 4564 6 0 * * * * * * 4514 0 0 T 7 2996 * 3934 3039 * 5095 * * 1603 * * 4038 * 2914 4614 4250 4569 * * * 7 0 * * * * * * 4522 0 0 Q 8 5378 * * 2739 * * 5906 * 5246 * * * * 378 * * 6197 * * * 8 0 * * * * * * 4637 0 0 V 9 * * * * * * * 1915 * 2693 * * * * * * * 786 * * 9 0 * * * * * * 4637 0 0 R 10 3730 * 2694 2841 * 5378 4419 5510 5558 5478 * 4049 * 3277 1725 * 5160 * * * 10 0 * * * * * * 4637 0 0 S 11 3763 * * 6281 5400 3891 4748 * * * 6473 4654 * 2865 4701 2921 * * * 1229 11 0 * * * * * * 4637 0 0 L 12 3570 4212 * * * * * 2530 * 839 3560 * * * * * * 5283 * 5709 12 0 * * * * * * 4637 0 0 L 13 4193 * * * 6132 * * 2250 * 734 4415 * * * * * * 3782 * * 13 0 * * * * * * 4637 0 0 N 14 2051 * 4012 * * * 4326 * 4321 * 6177 2939 * 5013 2669 2049 5446 * * * 14 0 * * * * * * 4637 0 0 Q 15 * * * * * 4493 * * 2862 * * 2133 * 991 4748 4330 * * * * 15 0 * * * * * * 4637 0 0 G 16 * * * * * 153 * * 4746 * * 4328 * * * 6215 * * * * 16 0 * * * * * * 4637 0 0 Y 17 * 3103 5283 * 5291 * 4148 * * 4566 * 5378 * 5510 * * * * 1397 1699 17 0 * * * * * * 4637 0 0 R 18 3308 * * 5708 * 6155 5378 2355 3242 5201 * 3990 * 5463 2296 3643 3665 4361 * 5906 18 0 * * * * * * 4637 0 0 I 19 5478 * * * 4193 * * 1351 * 4844 5652 * 1565 * * * * 2857 * * 19 0 * * * * * * 4637 0 0 G 20 3529 2069 * * * 1279 * * * 4684 * 4643 * * * 3123 3847 * * * 20 0 * * * * * * 4637 0 0 T 21 3643 * * * 6094 * * 2203 * 1773 4954 * * * * * 2775 2302 * 6130 21 0 * * * * * * 4650 0 0 E 22 * * * 0 * * * * * * * * * * * * * * * * 22 0 * * * * * * 4650 0 0 H 23 * * * * 1614 * 1269 * * * * * * * * * * 5247 4004 2559 23 39 5242 * 1640 558 * * 4649 1421 0 A 24 934 * 3698 3668 * * * * * * * * * * * 3180 2781 3943 * * 24 53 4802 * 3646 120 * * 4649 1482 0 D 25 4829 * 1083 2595 * 4661 4587 6108 4061 * * 3488 * * * 3805 6479 * * * 25 127 3570 * 3211 165 * * 4649 1814 0 K 26 3344 * 3151 3510 * 4799 * * 2350 * * 6324 2046 5301 4781 3512 4288 6164 * * 26 32 5489 * 4170 82 * * 4649 1302 0 R 27 5482 6211 4115 4169 5493 3132 * * 6152 * * * 3000 * 983 4916 * 4781 * * 27 15 6632 * 4170 82 * * 4649 1000 0 R 28 * * * 5256 * * 2327 * 6108 * * 5685 * 3504 1062 * * 5493 * 2725 28 35 5370 * 3133 175 * * 4649 1449 0 F 29 3164 * * * 1417 * * * * 5421 * * 2864 6412 * 5691 * * * 1634 29 37 5315 * 4170 82 * * 4648 1068 0 R 30 4786 * 2382 6326 5499 * * * 2270 * 4550 6117 * 4889 1289 5936 6207 * * * 30 0 * * * * * * 4648 0 0 T 31 4176 * 5421 4115 * 3375 * * * * 5305 2289 * 6207 6117 3386 1533 4961 * 4786 31 0 * * * * * * 4648 0 0 S 32 5658 * 6154 * * 2985 3841 * 3875 * * 3112 * 4854 2473 2132 3432 * * 4301 32 21 6117 * 2807 222 * * 4648 1000 0 S 33 4786 * * * 5336 6408 * 4302 * * * * * * * 1246 5524 4476 * 1365 33 20 6212 * 3322 152 * * 4648 1000 0 W 34 * * * * * * * * * * * * * * * * 5498 * 32 * 34 10 7177 * 1000 1000 * * 4648 1000 0 Q 35 * * 4918 2905 * * * 6172 3515 3641 * * 5499 1853 * 3903 2359 4493 * 4424 35 817 1284 5524 1307 747 * * 4648 3120 0 P 36 * * * 5714 * 3412 * * 1514 * 5554 6714 3395 * * 2342 2412 5271 * * 36 0 * * * * 0 * 4621 0 1000 C 37 3471 1973 5908 6484 5583 3385 * * * 1229 5491 * * * * * * * 4786 5294 37 63 4541 * 2819 220 * * 4649 1682 0 A 38 3668 * * 4366 * 2703 * 5908 * * * * 796 * * 3793 5788 6120 * 5514 38 0 * * * * * * 4649 0 0 P 39 3504 * * * 3227 * 6120 * * 3353 1672 6181 2555 5908 5514 5429 3123 5756 * * 39 0 * * * * * * 4649 0 0 I 40 4956 * * * 1203 * * 1790 * 4374 * * 4786 * * 6120 5514 3675 6181 4988 40 0 * * * * * * 4649 0 0 Q 41 6084 * 2241 3991 * 1431 4397 5514 5788 * * 4766 * 3824 5266 3549 4886 * * * 41 0 * * * * * * 4649 0 0 S 42 2755 1886 5788 3464 * 2768 * 3471 * 4167 * * * 5514 * 3023 4835 * * * 42 53 4786 * 1000 1000 * * 4649 1000 0 T 43 4259 * 5110 * 6188 3808 3942 6354 3216 * * 4821 6139 3583 3146 2881 1905 * * * 43 20 * 6181 * * * * 4649 0 0 N 44 5084 * 1343 4257 * 6111 5309 * * * * 2727 * 4885 2848 3060 5250 * * 6127 44 0 * * * * 0 * 4648 0 1000 E 45 2292 * * 1808 * 4673 6176 5419 * 5085 4786 6869 2355 5294 * 3268 * 5930 5756 * 45 0 * * * * * * 4649 0 0 R 46 1791 * 3600 4640 * 4743 * * * * 6659 3852 4436 4117 4416 1991 4498 5294 * * 46 0 * * * * * * 4649 0 0 Q 47 2633 * 4454 1725 * 4749 * * * * * * * 1556 5419 5672 5120 4587 * * 47 0 * * * * * * 4649 0 0 V 48 2452 * * * * * * 2743 * 5491 * * * * * * * 631 * * 48 0 * * * * * * 4649 0 0 L 49 * 5756 * * 3841 * 4786 2225 5294 1166 3543 * * * * * * 3855 * 4821 49 0 * * * * * * 4649 0 0 S 50 2074 * * 4721 4681 3472 * * 3846 4749 5930 4037 5107 3983 3648 2857 3659 * * 5491 50 0 * * * * * * 4649 0 0 E 51 2317 * * 890 * * 6183 * 6253 * * 3918 * 4715 4273 6469 5175 4718 * * 51 0 * * * * * * 4631 0 0 L 52 5459 * * * * * * 1765 * 947 * * * * * * * 2606 * * 52 0 * * * * * * 4631 0 0 E 53 3578 * * 1369 * 4145 5191 * * * * 2909 * 2525 3833 4499 6141 6654 * * 53 0 * * * * * * 4631 0 0 N 54 1795 * * 2001 * 4195 4273 * 4923 * * 3741 * 4413 3486 3936 4428 * * * 54 0 * * * * * * 4631 0 0 C 55 2743 713 * * 3679 * * 4674 * 5741 * * * 5401 * 5971 6176 4735 6196 * 55 0 * * * * * * 4631 0 0 L 56 4665 * * 6408 * * 4117 4022 3756 1150 * * * * 2113 * 4157 5817 * * 56 0 * * * * * * 4631 0 0 S 57 2113 * 4337 6619 * 5741 * * 1872 * * * * 2777 3442 2670 * 5497 * * 57 0 * * * * * * 4631 0 0 E 58 1916 5520 3961 1563 * 6120 5038 * * * * 6218 * 3576 5031 4130 4494 4777 * * 58 0 * * * * * * 4631 0 0 H 59 * 5664 * * 2250 * 1417 * 5669 * * 3217 * * * * * * * 1898 59 0 * * * * * * 4631 0 0 E 60 3353 4751 6155 4749 * * * * 5603 * * 4878 929 4627 5542 2947 4562 * * * 60 0 * * * * * * 4631 0 0 G 61 4666 * 1804 5534 * 1495 * * 3923 * * 2459 * 5724 * 6115 5903 * * * 61 0 * * * * * * 4631 0 0 E 62 2504 3506 3518 1598 * 4598 2778 * 4794 * * 5459 * * * 4427 * * * 5277 62 0 * * * * * * 4631 0 0 Y 63 * * * * 3026 * 3095 * * * * * * * * * * * 5424 440 63 0 * * * * * * 4631 0 0 V 64 * * * * * * 4843 1512 * * * * * * * * * 702 * * 64 0 * * * * * * 4631 0 0 R 65 * * * * * * 6856 * 4600 * * * * 4256 156 * * * * * 65 0 * * * * * * 4631 0 0 L 66 * 5191 * * * * * 3042 * 990 3113 * * * * * * 2106 * * 66 0 * * * * * * 4631 0 0 L 67 4369 * * * 3564 * * 1548 * 2749 6192 4036 * * * 4751 4743 2138 * * 67 0 * * * * * * 4631 0 0 G 68 2141 5333 * * * 521 * * * * * * * * * 6107 * 4751 * * 68 0 * * * * * * 4631 0 0 I 69 * * * 4751 1361 * * 1477 * * * * * * * * 6120 3058 * 3646 69 0 * * * * * * 4631 0 0 D 70 5779 * 134 * * * * * * * * 3829 * * * * * * * * 70 0 * * * * * * 4631 0 0 T 71 3438 * * 6183 * * * 5407 * * * 1821 1585 6196 6253 3225 3589 4751 * * 71 0 * * * * * * 4631 0 0 N 72 3890 * * * 5459 4660 5741 3259 2150 * 7491 3663 * 3755 5277 3210 4147 3110 * 4129 72 61 4598 * 1000 1000 * * 4631 1188 0 T 73 2074 * * * * 4029 5117 * 2546 * * 5503 * * 2528 3232 2939 4977 * 4751 73 85 4133 * 1000 1000 * * 4631 1495 0 R 74 * * * 3347 * * 4043 * 1280 * * 5270 * 1525 4164 * * * * * 74 0 * * * * * * 4631 0 0 S 75 * 4366 * * 5741 6325 * * 4355 * 6069 * * 3693 2033 1833 3546 2568 * * 75 0 * * * * * * 4631 0 0 R 76 * 4036 * * * * * * 5489 * * * 5574 1520 914 * * 5935 * * 76 55 * 4730 * * * * 4631 0 0 V 77 4837 2436 * * * 3209 * 3550 * 4750 * * * * 5678 6004 3198 1303 * * 77 0 * * * * 0 * 4518 0 1000 F 78 2032 6110 * * 5528 5701 5466 3979 * 2461 2678 * * * * 3465 * 2546 * 6118 78 0 * * * * * * 4630 0 0 E 79 2770 5623 * 1292 * 3712 * * * * 5701 * 5899 * * 1801 5285 * * * 79 0 * * * * * * 4630 0 0 A 80 4000 * * 6175 1265 * * 3401 4996 3220 5401 5503 * 4822 6118 6161 3176 4913 * 5566 80 0 * * * * * * 4630 0 0 L 81 * * * * * * * 1006 * 2424 4205 * * * * * 3406 2582 * * 81 0 * * * * * * 4630 0 0 I 82 2940 * * * * * * 1256 * * * * * * * * * 1149 * * 82 0 * * * * * * 4630 0 0 Q 83 * * * * 5462 * 1606 * * * * 4101 * 1061 * 4724 * * * 3767 83 0 * * * * * * 4610 0 0 R 84 * * 6317 * * * * * 2366 * * * * 4438 523 * 4284 * * * 84 0 * * * * * * 4610 0 0 P 85 5171 * * * * * * * * * * * 41 * * * * * * * 85 0 * * * * * * 4566 0 0 D 86 * * 1731 2317 * * * * * * * 1400 * * * 3069 * * * * 86 0 * * 0 * * * 3801 0 0 //