HHsearch 1.5 NAME c9fsrL_ FAM FILE c9fsrL_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9fsrL_.a3m DATE Sat Jan 18 10:14:40 2025 LENG 107 match states, 107 columns in multiple alignment FILT 103 out of 142 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4069 -0.6805 SEQ >ss_pred CCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHCCCC >ss_conf 9622242155789965899996578406899999997299803899871288888149999977999989999999999999999999999999999998 5102469 >Consensus xxxxxxlxxxxxxxxxxtfxixxEDHTLgNlLrxxLlxxpxVxfAgYxipHPlxxxxxirIqTxxxxxpxxxLxxaxxxlxxxxxxlxxxFxxaxxxxxx xxxxxxx >c9fsrL_ KTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKD QKASRNE >UniRef50_Q8IER7(24-121:126) Probable DNA-directed RNA polymerase II subunit RPB11 n=6 Tax=Plasmodium RepID=RPB11_PLAF7 E=6e-21 s/c=1.03 id=24% cov=93% ----KVTCTISDKGDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPKG-YAGVKLLSDNVNNILSQVATLKENFAKKIQKYKE SNS---- >UniRef50_D2EFV6(4-92:92) Putative uncharacterized protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFV6_9EURY E=3e-05 s/c=0.56 id=16% cov=84% ------IKVLEKEDSSIKFRVQGGTQSVLNLIKEEADSFDNVTFAGFVMEHPLEKSSIFVIKTDGK-DAEKTLKKIIEKTESDLKEAKKELNALFK---- ------- >UniRef50_A0RXH5(7-91:94) Putative uncharacterized protein n=1 Tax=Cenarchaeum symbiosum RepID=A0RXH5_CENSY E=7e-05 s/c=0.57 id=17% cov=80% ----------SASQKEANLSIRESDIGILYIVQHELLKKSGIEFAGVILKHQLTSEIWMRVNTSSG-SPVKAITDAADASVSTFGDLEKLFKSKIK---- ------- >UniRef50_C4V9M5(12-91:91) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9M5_NOSCE E=4e-10 s/c=0.82 id=24% cov=65% --------------------VEKETHSLGSSLSDKLCKDKRCIFSSYKVCHPKDDFMFLRVSCDDAISVKDCIVENLVDLENITQDLIN----------- ------- >UniRef50_Q9YEZ1(1-94:99) DNA-directed RNA polymerase subunit L n=1 Tax=Aeropyrum pernix RepID=RPOL_AERPE E=1e-17 s/c=0.97 id=19% cov=88% ---MERLRIIRESRGSYVIQVYGEDHTLGTLLVEAIKRVSNPKLAYYEAVHPMEDIIQVYVKYEDDVDIKEVLRKASDYLLEVIGDFRRRYLEALE---- ------- >UniRef50_Q9HIC5(5-103:111) DNA-directed RNA polymerase subunit L n=4 Tax=Thermoplasmatales RepID=RPOL_THEAC E=1e-13 s/c=0.78 id=17% cov=93% RTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSG-KPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYES ------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 2047 * * * * 1047 * * * * * 1867 * * * * * 1 0 * * * * * * 2615 0 0 T 2 * * * * * * * * 2303 * * * * * * 2332 740 * * * 2 0 * * * * * * 2782 0 0 A 3 956 * * * * * * * 1046 * * * * * * * * * * * 3 0 * * * * * * 2945 0 0 L 4 * * * 3176 * * * 2309 * 1135 2534 * * * * * * 4071 * * 4 0 * * * * * * 3821 0 0 E 5 4043 * * 2241 * * * * 1075 * * * * 4215 4366 3379 * 4191 * * 5 0 * * * * * * 4064 0 0 M 6 * * * 4395 * * * 1938 * 2997 2807 * * * 3667 3611 * 1928 * * 6 0 * * * * * * 4297 0 0 V 7 * * 4413 4684 * * * 2353 * 1107 4503 * * * * * 4059 2737 * * 7 55 4747 * 1000 1000 * * 4677 1000 0 Q 8 3422 4239 4823 4664 * 5044 4788 * 1476 * * * 3892 2902 3212 * 4509 * * * 8 62 * 4581 * * * * 4904 0 0 A 9 3611 * * * * 2106 * 4147 4390 * * * * 4775 4585 2789 3485 2160 * 4447 9 60 * 4626 * * 0 * 4869 0 1000 A 10 3574 * 1998 3907 4983 * * 2013 5224 4036 * 5037 5071 * * 4183 3633 4795 * * 10 0 * * * * * 0 4987 0 1000 G 11 3737 * 4181 1817 * 3385 * * * * * * * 5261 4435 1826 3170 5330 * * 11 26 * 5787 * * * 0 5201 0 1000 T 12 3910 * 2745 2543 * * * * 1958 * 5160 5053 3792 4405 * 3568 3419 * * * 12 0 * * * * 1017 983 5311 0 1618 D 13 5434 * 1772 2114 * * * * 4075 5179 * 2727 * * 5681 2611 4970 * * * 13 57 4683 * 0 * 0 * 5467 1425 1000 R 14 3226 * 4694 2744 5758 3931 * * 2555 4091 * * 2144 4929 3533 4412 * * * * 14 0 * * * * * * 5546 0 0 H 15 * * 3621 * 4915 4330 4827 * 3012 5475 * 1593 * * 5223 2189 3704 * * * 15 39 * 5223 * * * * 5576 0 0 C 16 1926 2147 5743 3247 * * * * 5136 * * 5287 * * 5983 2412 4606 4298 * 4737 16 0 * * * * * 0 5481 0 1000 V 17 2031 5219 * * * 2547 * 3384 4417 3332 * 5707 * 5391 3632 3893 * 3989 * 4027 17 0 * * * * * 0 5568 0 1000 T 18 * * * 3786 * * * 3847 4038 4321 6204 4036 * 5124 * 4021 1018 3818 * 5835 18 0 * * * * 0 * 5551 0 1000 F 19 * * * * 750 * * 2761 * 3302 5848 * * * * * * 3760 * 3934 19 0 * * * * * * 5615 0 0 V 20 6070 6584 * 3281 * * * 3610 3595 4681 6520 * * 3015 4787 3339 2048 2806 * 6182 20 0 * * * * * * 5712 0 0 L 21 * * * * 1922 * * 1598 * 2299 4724 * * * * * * 2602 * * 21 0 * * * * * * 5850 0 0 H 22 5933 * 7052 2002 5816 6890 3804 4853 3400 4400 5771 4357 5015 4151 3910 6373 4109 4067 6831 3432 22 0 * * * * * * 5863 0 0 E 23 * * 3079 3742 * 1474 6383 * 2261 3806 * 3237 * * 5374 6371 * * * 6300 23 0 * * * * * * 5882 0 0 E 24 * * 6246 254 * 4913 * * * * * * * 3868 * 6022 5926 * * 6114 24 0 * * * * * * 5882 0 0 D 25 * * 533 * * 3267 * * * * * 6122 * * 6360 4308 2964 * * * 25 0 * * * * * * 5882 0 0 H 26 6248 * * * * * 321 4366 * * * 4934 * 5179 6507 * * * * 3911 26 0 * * * * * * 5882 0 0 T 27 * * * * * 4618 * * * * * * * * * 4230 142 * * * 27 0 * * * * * * 5893 0 0 L 28 5740 * * * 4423 * * 2200 * 722 4655 * * * * * * 4283 * 5666 28 0 * * * * * * 5911 0 0 G 29 3707 4710 * * 5621 717 * 7670 * 2871 4092 * 5314 * * 6262 * 5773 * * 29 0 * * * * * * 5911 0 0 N 30 6264 * 5552 6290 * 6736 4926 * * 6612 * 459 * 6246 6141 4030 4564 * * 4570 30 0 * * * * * * 5911 0 0 S 31 2518 6543 * * * 6246 * 2715 * 1275 5320 * 3904 * * 3491 5090 5273 * * 31 0 * * * * * * 5911 0 0 L 32 * * * * * * * 2050 * 644 6440 * * * * * 6616 3369 * * 32 0 * * * * * * 5911 0 0 R 33 3989 * * 5758 * * 5716 * 2662 6775 * 6530 * 4478 1103 4901 4176 3031 * * 33 21 6125 * 0 * * * 5911 1000 0 Y 34 5313 6937 3725 2964 6154 5461 3296 6484 3809 * 3448 3985 * 5638 * 3153 3454 6623 4780 3099 34 0 * * * * * * 5911 0 0 M 35 3860 4329 6379 2418 7034 * 6651 3802 3726 4646 4150 5566 * 2923 4580 * 4773 2788 * 4476 35 0 * * * * * * 5911 0 0 I 36 3705 * * * * * * 2344 * 524 * * * * * * 6128 5931 * * 36 15 6564 * 1000 1000 * * 5911 1000 0 M 37 5451 5301 5967 4889 * 6288 3765 3857 5439 1417 2977 4685 * 5764 6567 3956 6557 4224 * 5288 37 0 * * * * * * 5912 0 0 K 38 4728 6557 7312 3065 * 5654 * * 1992 5880 * 3925 * 3026 2455 3390 4132 6131 * * 38 0 * * * * * * 5912 0 0 N 39 6658 5764 1506 4322 5306 * 4974 5149 3991 6726 4252 2066 * 4815 6096 6024 6463 6249 * 5029 39 42 5133 * 962 1039 * * 5912 1695 0 P 40 5262 * 3648 2830 * * * * 2638 * * 4613 1166 5643 5959 3832 * * * * 40 0 * * * * * * 5912 0 0 E 41 4463 * 2915 3293 6024 3078 4485 * 3115 * * 2968 * 3821 3001 4051 5992 * * 5226 41 0 * * * * * * 5912 0 0 V 42 * 5326 * * * * * 3053 * 6567 * 6131 6249 * * * 4719 361 * * 42 11 * 7013 * * * * 5912 0 0 E 43 4353 * 2841 2228 5564 6915 * 3860 3596 2766 * 6433 * 6015 7128 4183 3022 4111 * * 43 26 * 5827 * * 0 * 5912 0 1000 F 44 4963 * * 6090 636 * * 4149 5112 4227 5720 * * * * 6387 * 3928 * 3744 44 15 * 6553 * * 0 * 5902 0 1519 C 45 624 2478 * * * * * * * * * * * * * 3505 * 3578 * * 45 13 6818 * 5728 27 * 0 5905 1000 1000 G 46 3076 * * * 6367 773 * * 5772 6730 * 5981 * 6579 3955 3868 3812 6596 * 5985 46 0 * * * * 0 * 5905 0 1000 Y 47 * 6759 * * 4816 * * * * 6384 6333 6226 * 6533 6844 * * 4409 * 233 47 23 5991 * 0 * * * 5909 1000 0 T 48 4562 4500 3658 4617 5707 6257 * 4388 2658 * 6736 4773 * 6022 2384 2849 3630 4322 * 4935 48 9 7301 * 5087 43 * * 5908 1000 0 T 49 4496 * * * * * 6123 1607 5070 4741 3255 5710 * 3958 6407 * 5705 1614 * * 49 0 * * * * * * 5908 0 0 T 50 6656 6125 3699 3017 * * * 5585 3528 6299 * 5606 848 * 6757 6552 5238 4950 * * 50 16 * 6460 * * * * 5908 0 0 H 51 * * * * 5142 * 101 * * * * * * * * * * * * 4661 51 0 * * * * 0 * 5892 0 1000 P 52 * * * * * * * * 5996 5766 * * 165 4365 * 6227 * 6376 * * 52 66 5110 5985 515 1735 * * 5908 1598 0 S 53 4064 * * 5110 7002 6808 * 4784 6121 995 4324 5806 * 5988 * 2540 4083 5168 * * 53 42 5112 * 2697 242 0 * 5874 1780 1000 E 54 6540 * 3356 1468 4980 * 5842 3050 3743 4721 6383 5832 * 3225 6736 * 4302 4293 * * 54 0 * * * * * * 5908 0 0 S 55 5053 6946 2547 5191 * 3669 3586 * 5966 * 5996 2503 2612 5850 4913 2932 5504 * * 5264 55 16 6460 * 2000 415 * * 5908 1000 0 K 56 6509 * 4834 3091 4879 * 4977 4100 1923 5046 5215 2617 * 5598 4466 4854 4810 3879 * 5348 56 11 7008 * 3459 138 * * 5908 1000 0 I 57 5273 6018 * * 3830 * * 1783 * 3329 2845 6649 2526 * * 4276 * 3012 * * 57 0 * * * * * * 5908 0 0 N 58 6441 * * 2650 3928 * 4709 3358 4119 3588 * 2501 * 4030 5872 * 4474 3467 4667 4125 58 0 * * * * * * 5908 0 0 L 59 * * * * 3332 * * 1598 * 1399 3603 * * * * * * 3198 * * 59 23 * 5996 * * * * 5908 0 0 R 60 * * 6566 6302 6706 * 6400 5585 2653 6996 6237 * * * 1071 5031 3219 4271 * 3493 60 10 * 7189 * * 0 * 5877 0 1000 I 61 * * * * * * * 1027 * 2763 5770 * * * * * * 1621 * 5760 61 40 * 5193 * * * 0 5918 0 1000 Q 62 * * * 4833 * * 4720 5037 1977 6528 * 5092 * 1293 3032 4877 5218 6510 * * 62 51 6012 5675 4117 86 1528 614 5870 1723 2252 T 63 3890 5166 * * * * * * 5959 4963 4365 * 5045 * * 5612 622 3583 * 5363 63 70 4663 6947 1573 591 684 1406 5869 2016 2200 R 64 5405 6273 2098 4521 * 5740 5960 6107 2445 5842 * 3225 * * 3889 3619 3691 4218 * 4352 64 29 6329 7105 2585 263 1193 830 5898 1000 1549 G 65 5697 * 2778 3824 * 1714 * * 3930 * * 4364 4832 5031 4317 2333 5779 6287 * * 65 89 5876 4545 3443 139 0 * 5898 1515 1672 T 66 4428 * 2677 5221 6281 2348 * * 2933 * * 3638 * 4304 * 2799 2926 6390 * 6381 66 305 5213 2614 736 1323 0 * 5897 1558 2432 L 67 4333 5571 5885 4290 5143 5896 4891 2157 4102 5153 5477 4905 * 5566 6181 3559 3124 2919 * 4339 67 76 5094 5494 2287 331 185 3056 5767 1713 4223 P 68 4741 * 2076 4939 * 5734 * * 3439 7061 * 3679 3516 4980 5181 2496 2538 * * * 68 64 5151 6023 4595 61 0 * 5859 1936 2263 A 69 1970 6390 * * 4918 6499 * 4446 * 5985 * * 868 * * 5179 6987 4514 * * 69 0 * * * * 0 * 5905 0 1408 V 70 5868 * 5486 3533 6993 * * 3342 2850 2427 5491 7007 6285 4501 3776 6603 3169 2929 * 5040 70 0 * * * * * * 5900 0 0 E 71 4641 * 1981 1793 * 4896 * * 2701 5338 * 6285 5170 3656 * 5407 4880 5137 * * 71 30 5599 * 1000 1000 * * 5900 1666 0 P 72 1334 4460 * 5148 * * * 3185 * 3904 6300 * 4851 * * 5094 5381 1986 * * 72 0 * * * * * * 5900 0 0 F 73 * * * * 4002 * * 2799 * 735 3869 * 6022 * * * * 3423 * 5968 73 48 * 4941 * * * * 5900 0 0 Q 74 5231 * 5493 2675 * 6371 6916 4661 1841 3198 6382 4866 7132 4081 2964 5732 4660 4392 * * 74 0 * * * * 0 * 5870 0 1693 R 75 4763 * 2806 2351 * 5237 6411 * 2164 6405 * 4070 6651 3546 3626 3956 5068 * 5601 * 75 19 6285 * 1585 585 * * 5900 1000 0 G 76 746 4893 * * * 2629 * 4821 6287 * * 5302 * * * 3953 4382 5474 * * 76 0 * * * * * * 5900 0 0 L 77 3039 3271 * * 4915 * * 2203 * 1581 5783 6014 * * * 4158 5278 3743 * * 77 0 * * * * * * 5900 0 0 N 78 4980 * 2906 2206 * * 7286 * 2713 6735 * 3834 * 3031 3674 4008 3402 5490 * * 78 0 * * * * * * 5900 0 0 E 79 4839 4468 1714 4202 * 5518 5774 * 3021 6549 6993 3832 * 4252 3860 3157 4915 * * 4570 79 0 * * * * * * 5900 0 0 L 80 5006 * * * 5583 * * 2295 * 863 4572 * * * 6378 5229 5947 3360 * * 80 0 * * * * * * 5891 0 0 M 81 3607 * 4624 3348 6511 5693 7109 2432 3645 3604 5443 5931 * 4663 3263 3584 6297 3575 * 5004 81 0 * * * * * * 5878 0 0 N 82 3565 * 2647 3002 * 3946 6606 6375 2985 5676 * 3721 * 3585 6029 2928 3979 5124 * * 82 0 * * * * * * 5878 0 0 V 83 5985 6580 3123 2802 6467 5138 7038 3101 4478 2866 3809 5574 * 4374 4492 4814 3727 4017 6389 * 83 0 * * * * * * 5872 0 0 C 84 3800 1787 * * 2696 5525 * 3748 * 2721 4815 * * * * 5048 3892 4758 * 3916 84 0 * * * * * * 5872 0 0 Q 85 3660 * 2165 2465 * 3415 6396 6241 3688 6008 * 3781 * 3917 5083 3464 4893 6359 * * 85 0 * * * * * * 5872 0 0 H 86 4498 * 2997 2501 * 6590 2917 3827 4056 4483 * 4579 * 4455 * 3950 3218 4372 * 5168 86 0 * * * * * * 5872 0 0 V 87 5322 * 6008 * 2634 * * 2709 * 1262 4395 * * * * 6241 4153 3311 * 6530 87 0 * * * * * * 5872 0 0 L 88 4019 6241 7174 2355 7129 3862 * 3907 2266 2534 5701 6986 * 5091 3577 5145 5005 * * * 88 0 * * * * * * 5872 0 0 D 89 4752 * 2708 2896 * 5241 6570 * 2472 * 6491 3436 * 3829 3214 3200 4294 5897 * * 89 0 * * * * * * 5921 0 0 K 90 4002 * * 2200 6059 6135 * * 2790 3518 5559 4034 * 4872 3597 3174 3396 4210 * * 90 0 * * * * * * 5809 0 0 F 91 * * * * 614 * * 4288 * 3565 * * * * * * * 4245 4614 3089 91 0 * * * * * * 5801 0 0 E 92 4041 * 2506 2367 * * * 4153 3301 3813 5325 3103 * 4007 4518 4327 4881 6686 * * 92 0 * * * * * * 5781 0 0 A 93 3166 * 4195 2144 * 6370 6620 * 2404 * * 3730 * 4895 2906 3342 4659 * * 5986 93 42 5110 * 342 2245 * * 5811 1490 0 S 94 1260 * * 2898 * * * * 2931 3906 6007 * * 5131 5876 2927 4594 5933 * * 94 16 6491 * 0 * * * 5798 1000 0 I 95 4095 6041 * * 3825 * * 2758 4636 1786 4174 * * * 5364 5851 6414 2181 5952 4950 95 0 * * * * * * 5765 0 0 K 96 3550 * 4128 2516 * 3823 5236 6435 2379 * * 4624 * 3188 3236 3459 6572 5392 * * 96 49 * 4913 * * * * 5693 0 0 D 97 2427 * 3829 2539 * 5209 * 5756 3104 * * 2720 * 3310 3855 4159 * 4959 * * 97 0 * * * * 0 * 5368 0 1138 Y 98 5169 * 5403 4347 1305 * 3149 5869 5403 5057 * * * * * 5274 5447 * 5546 2053 98 0 * * * * * * 5019 0 0 K 99 3488 * 4069 2713 * * * * 1795 5693 5447 5280 * 3586 2674 4203 4373 * * * 99 0 * * * * * * 4872 0 0 D 100 3290 * 2633 2781 4335 * 4985 * 2447 * 4951 5291 * 4110 4601 2853 5008 * * * 100 0 * * * * * * 4803 0 0 Q 101 4697 * * 2127 * * 3506 * 3366 4510 4938 4170 * 3343 3303 3243 3185 * * * 101 0 * * * * * * 4568 0 0 K 102 4290 * * 4489 * * * * 1495 * * 2332 * 2691 3101 4594 * 4712 * * 102 0 * * * * * * 4291 0 0 A 103 1546 * * * * 2697 * * 3758 * * 3813 4079 * * 2078 * 4008 * * 103 0 * * * * * * 3770 0 0 S 104 2340 * * 1939 * * * * * * * * * * * 1930 1840 * * * 104 0 * * * * * * 3304 0 0 R 105 3356 * * 2157 * * * * * * * * * 3052 2253 1524 * * * * 105 0 * * * * * * 3103 0 0 N 106 * * * * * * * * * * * 2027 1942 * * 1016 * * * * 106 0 * * * * * * 2178 0 0 E 107 * * * 0 * * * * * * * * * * * * * * * * 107 0 * * 0 * * * 1995 0 0 //