HHsearch 1.5 NAME c9ei1F_ FAM FILE c9ei1F_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9ei1F_.a3m DATE Sat Mar 8 10:06:38 2025 LENG 82 match states, 82 columns in multiple alignment FILT 52 out of 54 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4199 0.2101 SEQ >ss_pred CCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHEEECC >ss_conf 9875420375324456567887878886459823674788748999999999729996899997799978887766536729 >Consensus xpxxxrxtxpxLTkfExARIiGxRAlQisxgApxxixxxxxxdplxIAxxElxxxxiPxxIrRxlPxGxyEdxxvxeLxxxx >c9ei1F_ QANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD >UniRef50_Q387N1(24-122:131) DNA-directed RNA polymerase subunit, putative n=4 Tax=Trypanosoma RepID=Q387N1_9TRYP E=3e-17 s/c=0.91 id=39% cov=98% -PLKDRKSSVYLTKYEVARIIGERARQIVNGTSVLLDSQNgcgtgnslelaegcadpfaaSVDPIHITKLELLQGRIPMIVRRTWPDGRTENIPVNELKV -- >UniRef50_P0C9D6(65-147:151) DNA-directed RNA polymerase subunit 6 homolog n=8 Tax=African swine fever virus RepID=RPB6_ASFM2 E=3e-13 s/c=0.92 id=34% cov=96% -PDNERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRcikVTPEGQkiVEIWNPREMGI-- >UniRef50_B8D5H9(10-85:106) DNA-directed RNA polymerase subunit K n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D5H9_DESK1 E=2e-12 s/c=0.96 id=36% cov=91% ----EEVFSKRLTRFEIARVVGARALQLSMGAPPIIDVSNLpvKDPVYIAVNELITGLLPMSIRRI-NNGREELVPVGKLL--- >UniRef50_Q8ZTF9(22-103:106) DNA-directed RNA polymerase subunit K n=5 Tax=Thermoproteaceae RepID=RPOK_PYRAE E=2e-15 s/c=1.01 id=42% cov=99% --NKREFYPPRLTKYETARIIGARALQLAMGAQPLVDIQevGSVDPVLIAMEELRRGLLDFIIVREMPDGKTMRIRLKELLELE >UniRef50_Q5UQ32(183-262:396) DNA-directed RNA polymerase subunit 6 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO6_MIMIV E=1e-21 s/c=1.29 id=38% cov=99% -PDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHLPGKKYEDWRIDELGMI- >UniRef50_B1L6H7(2-66:84) DNA-directed RNA polymerase, subunit K n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6H7_KORCO E=6e-09 s/c=0.95 id=40% cov=76% --NSDLLGPKRLTKFEKVRIISVRAQQIATGSPLFLEeneiPEGLTDPIELAKLELEKGKLPILIGR------------------- >UniRef50_A9A2B7(102-178:182) RNA polymerase Rpb6 n=3 Tax=Archaea RepID=A9A2B7_NITMS E=3e-17 s/c=1.16 id=40% cov=94% EKNKVTIGPPTLTRFEKARIMGARALQLSLGAPPFIPIPKTARiSLDISMEELEQRVIPITIRRVLPNGDYQNIPID------ >UniRef50_D2TEV8(6-74:81) Putative RNA polymerase Rpb6 n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEV8_9VIRU E=2e-11 s/c=1.01 id=30% cov=85% -------TSSYLTRFELARLAGIVELQLQDNKTSVIDSSKTLH--DQAVDIVLNKETDIVIRRILPGDSYEDVSLKTL---- >UniRef50_A6UVZ8(4-55:61) RNA polymerase Rpb6 n=7 Tax=Methanococcus RepID=A6UVZ8_META3 E=1e-08 s/c=1.18 id=45% cov=65% ------------TKFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPL----------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * 1101 * * * * * * * * * 906 * * * * * * 1 0 * * * * * * 1888 0 0 A 2 2077 * * * * * * * 3228 * * * 608 * * * * * * * 2 0 * * * * * * 2659 0 0 N 3 * * 1896 4767 * * * * 2543 3720 * 1601 * * 5090 4362 4661 * * * 3 0 * * * * * * 2867 0 0 Q 4 * * 2588 4269 * 5038 5016 * 1585 * * 2092 * 5338 * 2966 * * * * 4 0 * * * * * * 2986 0 0 K 5 * * 2835 1464 * * * 3633 2396 5435 * * 5498 4633 4384 * 5088 3966 * * 5 0 * * * * * * 3298 0 0 R 6 * * * 3020 * * 5760 * 2984 4957 * * * * 600 * 4648 * * * 6 0 * * * * * * 3316 0 0 I 7 6113 * * 3659 3456 * * 1600 3235 3821 5461 * * 5773 3879 5251 4170 3088 * * 7 0 * * * * * * 3339 0 0 T 8 * * * * 4229 2417 * * * * * * * * * 3012 830 * * 3779 8 0 * * * * * * 3522 0 0 T 9 5427 * 3860 * * 4511 * * * 4390 * * 1516 * * 2028 2513 * * 4436 9 0 * * * * * * 3522 0 0 P 10 * * * 5578 5568 * * 5419 3245 4511 * 4265 856 * 3545 4030 * 4882 * * 10 0 * * * * * * 3522 0 0 Y 11 * * * * 3237 * 5293 3093 4002 * * * * * 2587 * 4485 3888 5480 1367 11 0 * * * * * * 3440 0 0 M 12 * * * * * * * 3584 * 436 2647 * * * * * * * * 5797 12 0 * * * * * * 3379 0 0 T 13 * * * * * * * * * * * * * * * 4926 48 * * * 13 0 * * * * * * 3383 0 0 K 14 * * * * * * * * 775 * * * * * 1794 5592 4585 * * 3948 14 0 * * * * * * 3424 0 0 Y 15 * * * * 953 * * * * * * * * * * * * * * 1049 15 0 * * * * * * 3424 0 0 E 16 * * * 0 * * * * * * * * * * * * * * * * 16 0 * * * * * * 3424 0 0 R 17 4585 * * * 5094 * * 2759 1560 3964 * * * 5450 1890 * 5817 3884 * * 17 0 * * * * * * 3424 0 0 A 18 216 * * * * * * * * * * * * * * * 4585 3362 * * 18 0 * * * * * * 3424 0 0 R 19 * * * * * * 5449 * 4082 * * * * * 152 * * 5782 * * 19 0 * * * * * * 3424 0 0 V 20 * * * * * * * 709 * 2356 * * * * * * * 2373 * * 20 0 * * * * * * 3424 0 0 L 21 3964 * * * * * * 1352 * 1445 4349 * * * * * * 2969 * * 21 12 * 6956 * * * * 3424 0 0 G 22 3814 * * * * 243 * * * * * * * * * 3575 * * * * 22 0 * * * * * 0 3426 0 1000 T 23 1582 * * 3879 * * * 3377 * * * * * * * 4548 1890 2403 * * 23 0 * * * * * 0 3426 0 1000 R 24 * * * * * * * * * * * * * * 96 * * 3963 * * 24 0 * * * * * 0 3426 0 1000 A 25 194 * * 3963 * * * * * * * * * * * 4937 5090 * * * 25 0 * * * * * 0 3426 0 1000 L 26 * * * * 5398 * * 5754 3889 646 5925 * * 2960 4065 * 5403 * * 5445 26 0 * * * * * 0 3426 0 1000 Q 27 * * * * * * * * * * * * * 0 * * * * * * 27 0 * * * * * 0 3426 0 1000 I 28 * * * * 3945 * * 853 * 1390 * * * * * * * * * * 28 0 * * * * * 0 3426 0 1000 A 29 1770 * * * * * * * * * 5090 3945 * 3963 * 949 * 5039 * * 29 0 * * * * * 0 3426 0 1000 M 30 5403 * 3008 * * * * 3567 5864 3358 1369 3702 * 6011 * 3832 5517 * * 3617 30 0 * * * * * 0 3426 0 1000 C 31 * 5460 * * * 496 * * * * * 1899 * * * * * * * * 31 0 * * * * * 0 3426 0 1000 A 32 360 * * * * 4582 * * 3963 * * 5061 * * * 4197 5039 * * * 32 49 4899 * 0 * * 0 3426 1000 1000 P 33 4734 * * * 5019 * * * 4324 5946 * * 643 5811 5843 3427 3963 * * 4937 33 0 * * * * 0 * 3426 0 1000 V 34 3312 * * * * * * 3371 * 3706 4741 * 1729 * * 3964 4585 1830 * * 34 31 5572 * 0 * * * 3424 1000 0 M 35 * * * * 3109 * 5450 3752 * 1454 2891 * * 5937 * 4741 2867 3964 * 4945 35 27 5760 * 3000 193 * * 3424 1000 0 V 36 * * 5572 * * * * 1325 4902 2931 * * * * * * 6030 1322 * * 36 33 5450 * 1585 585 * * 3424 1000 0 E 37 * * 1385 1993 * 4902 * 5572 3174 * * 4524 2820 6001 * * * * * * 37 125 5521 4035 2000 415 * * 3424 1000 0 L 38 * * 6016 * * 3781 * 2440 5400 2512 * 5679 3290 * * 2727 3119 2829 * * 38 43 5081 * 0 * 0 * 3308 1488 1602 E 39 * * 3366 2047 * 4009 * * 2732 * * 4546 3543 4087 * 2532 4139 4996 * * 39 157 3526 5921 1000 1000 * * 3424 1842 0 G 40 5942 4949 5574 2831 * 1372 * * 2258 * * 3315 * * * 4754 4739 5681 * * 40 171 3991 4346 3231 162 0 * 3383 1745 1000 E 41 * * 3931 2241 * 3475 5431 5463 3848 3714 6224 * * 4664 6055 2606 2581 * * 4564 41 182 3077 * 3127 175 0 * 3408 2238 1600 T 42 3810 * 5952 * * * * 4196 5663 2864 3948 5547 * * 4581 2461 1867 3296 * 6023 42 72 5948 4941 0 * * * 3424 1000 0 D 43 * * 699 5843 * * 2915 * * * * 4395 * * 5600 3179 4471 * * 6574 43 132 5600 3908 0 * 0 * 3389 1000 1000 P 44 4611 * * * * 4952 * * * * * * 378 * * 3001 * 4954 * * 44 0 * * * * * 0 3261 0 1000 L 45 3860 * * * * * * 1924 * 1042 6221 * * * * * * 2569 * * 45 47 * 4952 * * 0 * 3261 0 1000 L 46 4059 * 1792 3808 * 6085 5038 4943 3349 3385 4737 4656 * 3691 4644 4948 5974 4487 * 5593 46 0 * * * * 0 * 3360 0 1000 I 47 5139 * * * * * * 477 * 4485 3291 * * 3964 * * * 4572 * * 47 0 * * * * * * 3424 0 0 A 48 76 * * * * * * * * * * * * * * 5601 5040 * * * 48 0 * * * * * * 3423 0 0 M 49 5884 * * 2684 3402 * * 4420 2807 3970 2526 5434 * 5816 3289 6020 5753 3573 6390 4938 49 0 * * * * * * 3423 0 0 K 50 6242 * 3960 1927 * 5932 * 5567 2202 3545 5434 4302 * 4069 4491 * * 3648 * 4027 50 0 * * * * * * 3423 0 0 E 51 * * 4738 155 * * * 3960 * * * * * * * * * * * * 51 0 * * * * * * 3423 0 0 L 52 * * * * 2618 * * 4938 * 579 * * * * * * * 3504 * 4417 52 0 * * * * * * 3423 0 0 K 53 4607 * 4052 2541 4579 * 5538 5659 2226 2920 * 5231 * 6516 3212 4998 3937 5132 * 5192 53 0 * * * * * * 3423 0 0 A 54 2587 * * 3260 * * * * 3353 4868 * 2354 * 1984 3215 5559 5659 * * * 54 0 * * * * * * 3423 0 0 R 55 * * 5684 * * 1411 * * 1691 * * 3147 * * 2459 * * * * * 55 0 * * * * * * 3423 0 0 K 56 4647 * * 3960 * * * 3510 1374 3034 3937 * * * 4088 5538 6388 2811 * * 56 0 * * * * * * 3423 0 0 I 57 * * * * * * * 948 * 1910 5844 * * * * * 2777 4263 * * 57 0 * * * * * * 3423 0 0 P 58 * * 3607 * * * * * * * * * 295 * 4738 3937 * * * * 58 0 * * * * * * 3423 0 0 I 59 * * * * 2026 * * 1385 * 2005 3343 * * * * * * 5387 * * 59 0 * * * * * * 3423 0 0 I 60 * * 4798 * * * * 1387 3420 3180 * * * * * 3946 2250 3282 * * 60 0 * * * * * * 3423 0 0 I 61 * * * * * * * 950 * 5538 * * 4938 * * * * 1224 * * 61 0 * * * * * * 3423 0 0 R 62 * * * * * 5490 * 3459 2892 * 4579 * * * 615 * * 4899 * 5387 62 0 * * * * * * 3423 0 0 R 63 * * * * * * * * 5005 * * * * * 46 * * * * * 63 76 4277 * 1585 585 * * 3416 1000 0 Y 64 * * * 5076 5071 * 3385 3161 5225 * * * 5083 * 2766 * 3730 2855 5242 1786 64 44 * 5055 * * * * 3505 0 0 L 65 * * * * 3788 * * * * 605 5046 * * * * * 3119 * 3320 5343 65 0 * * * * 0 * 3444 0 1000 P 66 * * * * * * * * * * * 4940 173 4819 * 4473 * * * * 66 0 * * * * * * 3461 0 0 D 67 * * 1387 3655 * 2554 * * * * * 1589 * * * 4819 * * * * 67 0 * * * * * * 3461 0 0 G 68 * * 3980 * * 393 5979 * 3207 * * * * 5388 * 5206 * * * * 68 0 * * * * * * 3461 0 0 S 69 4514 * 3808 5645 * 4845 * * 1982 * 5892 5354 * 3764 3536 1745 4003 * 6035 * 69 75 4298 * 1000 1000 * * 3461 1000 0 Y 70 * * * 3864 3470 4848 6339 5082 * * * * * * 4599 * 3944 2664 * 999 70 0 * * * * * * 3427 0 0 E 71 * * * 402 * * * * * * 5026 * * 2880 * * * 3701 * * 71 0 * * * * * * 3427 0 0 D 72 * * 912 3820 * * * 4208 * 2955 * 3239 * * 5026 4848 4526 * * * 72 0 * * * * * * 3427 0 0 W 73 * * * * 4486 * * 1890 * 4848 * * * * * * * 2719 1128 4599 73 0 * * * * * * 3427 0 0 G 74 3874 * * 5353 4486 6158 5948 * 3085 * * 4208 1923 * 3286 2073 4143 * * * 74 0 * * * * * * 3427 0 0 V 75 * 6027 * * * * * 2317 * 1625 * * 4208 * * * 5947 1361 * * 75 0 * * * * * * 3427 0 0 D 76 6337 * 1728 3994 * 4919 * * 2605 * 5019 3129 * 4636 3582 3158 * * 4486 * 76 0 * * * * * * 3427 0 0 E 77 * 4759 * 554 * * * * 2924 * * * * 5896 4754 * 3960 * * 4957 77 0 * * * * * * 3415 0 0 L 78 * * * * * * * 3905 * 192 4114 * * * * * * * * * 78 0 * * * * * * 3385 0 0 I 79 * * * 3546 * 2825 4788 1853 4312 2521 3122 * * 5257 * 5398 * 3815 * * 79 0 * * * * * * 3143 0 0 I 80 * * * 3588 * * * 1546 * 4575 3088 * * * 4410 * * 1443 * * 80 0 * * * * * * 2895 0 0 T 81 3439 * * * * * * 1397 * 1447 * * * * * * 3691 3578 * * 81 0 * * * * * * 2335 0 0 D 82 * * 535 2460 * * * * * * * 2965 * * * * * * * * 82 0 * * 0 * * * 2123 0 0 //