HHsearch 1.5 NAME c9eh5T_ FAM FILE c9eh5T_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9eh5T_.a3m DATE Sat Feb 22 09:04:22 2025 LENG 32 match states, 32 columns in multiple alignment FILT 2 out of 4 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.5364 3.8969 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >ss_conf 93044347999999984158999987516889 >Consensus nlepifqltfxglixxagpxvifxlafrggdl >c9eh5T_ NLEPIFQLTFLGLIVLAGPAVVFVLAFRGGDL >UniRef50_B7K1L1(8-39:39) Photosystem II reaction center protein ycf12 n=11 Tax=cellular organisms RepID=YCF12_CYAP8 E=4e-07 s/c=1.74 id=79% cov=103% NLEPIFQLTFVGLIMVAGPVVIFLLAFRGGDL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 0 * * * * * * * * 1 0 * * * * * * 1139 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1139 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 1139 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1139 0 0 I 5 * * * * * * * 0 * * * * * * * * * * * * 5 0 * * * * * * 1139 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1139 0 0 Q 7 * * * * * * * * * * * * * 0 * * * * * * 7 0 * * * * * * 1139 0 0 L 8 * * * * * * * * * 0 * * * * * * * * * * 8 0 * * * * * * 1139 0 0 T 9 * * * * * * * * * * * * * * * * 0 * * * 9 0 * * * * * * 1139 0 0 F 10 * * * * 0 * * * * * * * * * * * * * * * 10 0 * * * * * * 1139 0 0 L 11 * * * * * * * * * 1000 * * * * * * * 1000 * * 11 0 * * * * * * 1139 0 0 G 12 * * * * * 0 * * * * * * * * * * * * * * 12 0 * * * * * * 1139 0 0 L 13 * * * * * * * * * 0 * * * * * * * * * * 13 0 * * * * * * 1139 0 0 I 14 * * * * * * * 0 * * * * * * * * * * * * 14 0 * * * * * * 1139 0 0 V 15 * * * * * * * * * * 1000 * * * * * * 1000 * * 15 0 * * * * * * 1139 0 0 L 16 * * * * * * * * * 1000 * * * * * * * 1000 * * 16 0 * * * * * * 1139 0 0 A 17 0 * * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 1139 0 0 G 18 * * * * * 0 * * * * * * * * * * * * * * 18 0 * * * * * * 1139 0 0 P 19 * * * * * * * * * * * * 0 * * * * * * * 19 0 * * * * * * 1139 0 0 A 20 1000 * * * * * * * * * * * * * * * * 1000 * * 20 0 * * * * * * 1139 0 0 V 21 * * * * * * * * * * * * * * * * * 0 * * 21 0 * * * * * * 1139 0 0 V 22 * * * * * * * 1000 * * * * * * * * * 1000 * * 22 0 * * * * * * 1139 0 0 F 23 * * * * 0 * * * * * * * * * * * * * * * 23 0 * * * * * * 1139 0 0 V 24 * * * * * * * * * 1000 * * * * * * * 1000 * * 24 0 * * * * * * 1139 0 0 L 25 * * * * * * * * * 0 * * * * * * * * * * 25 0 * * * * * * 1139 0 0 A 26 0 * * * * * * * * * * * * * * * * * * * 26 0 * * * * * * 1139 0 0 F 27 * * * * 0 * * * * * * * * * * * * * * * 27 0 * * * * * * 1139 0 0 R 28 * * * * * * * * * * * * * * 0 * * * * * 28 0 * * * * * * 1139 0 0 G 29 * * * * * 0 * * * * * * * * * * * * * * 29 0 * * * * * * 1139 0 0 G 30 * * * * * 0 * * * * * * * * * * * * * * 30 0 * * * * * * 1139 0 0 D 31 * * 0 * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1139 0 0 L 32 * * * * * * * * * 0 * * * * * * * * * * 32 0 * * 0 * * * 1139 0 0 //