HHsearch 1.5 NAME c9eh0F_ FAM FILE c9eh0F_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9eh0F_.a3m DATE Sat Dec 21 10:33:09 2024 LENG 78 match states, 78 columns in multiple alignment FILT 52 out of 54 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4209 0.2412 SEQ >ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHEEECC >ss_conf 955676424556567887878886459833664688748999999999729996899997799978887766547739 >Consensus erxtxpxLTkfExARIiGxRAlQisxgApxxixxxxxxdplxIAxxElxxxxiPxxIrRxlPxGxyEdxxvxeLxixx >c9eh0F_ KRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD >UniRef50_Q9YDJ9(2-77:89) DNA-directed RNA polymerase subunit K n=1 Tax=Aeropyrum pernix RepID=RPOK_AERPE E=9e-20 s/c=1.28 id=43% cov=96% -KIGPPYLTKYERARIIGVRAFQLSIGAPPLVDPEraGSRNPLDIARYEVDNGILPVSIYRYLPGGGGQSLSLSRLV--- >UniRef50_P0C9D6(68-147:151) DNA-directed RNA polymerase subunit 6 homolog n=8 Tax=African swine fever virus RepID=RPB6_ASFM2 E=4e-07 s/c=0.70 id=36% cov=97% ERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRcikVTPEGQkiVEIWNPREMGI-- >UniRef50_D2TEV8(6-74:81) Putative RNA polymerase Rpb6 n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEV8_9VIRU E=2e-05 s/c=0.73 id=30% cov=90% ---TSSYLTRFELARLAGIVELQLQDNKTSVIDSSKTLH--DQAVDIVLNKETDIVIRRILPGDSYEDVSLKTL---- >UniRef50_Q387N1(27-122:131) DNA-directed RNA polymerase subunit, putative n=4 Tax=Trypanosoma RepID=Q387N1_9TRYP E=4e-17 s/c=0.92 id=40% cov=99% DRKSSVYLTKYEVARIIGERARQIVNGTSVLLDSQNgcgtgnslelaegcadpfaaSVDPIHITKLELLQGRIPMIVRRTWPDGRTENIPVNELKV-- >UniRef50_A6UVZ8(4-55:61) RNA polymerase Rpb6 n=7 Tax=Methanococcus RepID=A6UVZ8_META3 E=1e-08 s/c=1.18 id=45% cov=68% --------TKFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPL----------------- >UniRef50_Q6W391(95-166:168) Predicted DNA-directed RNA polymerase IIb n=2 Tax=Archaea RepID=Q6W391_9CREN E=3e-16 s/c=1.20 id=44% cov=92% --VGPITLTRFEKARIMGARALQLSLGAPVFVEIpKNTTTSLQIAMEELKKRVIPIVIKRTLPNQDYQNIPLDK----- >UniRef50_B8D5H9(10-85:106) DNA-directed RNA polymerase subunit K n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D5H9_DESK1 E=6e-12 s/c=0.95 id=36% cov=96% EEVFSKRLTRFEIARVVGARALQLSMGAPPIIDVSNLpvKDPVYIAVNELITGLLPMSIRRI-NNGREELVPVGKLL--- >UniRef50_B1L6H7(6-66:84) DNA-directed RNA polymerase, subunit K n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6H7_KORCO E=4e-08 s/c=0.97 id=41% cov=74% --LGPKRLTKFEKVRIISVRAQQIATGSPLFLEeneiPEGLTDPIELAKLELEKGKLPILIGR------------------- >UniRef50_Q5UQ32(186-262:396) DNA-directed RNA polymerase subunit 6 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO6_MIMIV E=2e-20 s/c=1.30 id=40% cov=100% ERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHLPGKKYEDWRIDELGMI- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * 2673 953 * * * * 1901 * * * * 4089 * * * * * * 1 0 * * * * * * 3010 0 0 R 2 * * * 4171 * * 5357 * 2616 * * * * * 402 * * * * * 2 0 * * * * * * 3124 0 0 I 3 6050 * * 3586 4226 * * 1545 3156 3802 5426 * * * 3768 5206 3717 3035 * * 3 0 * * * * * * 3321 0 0 T 4 * * * * 4082 2393 * * * * * * * * * 2912 695 * * * 4 0 * * * * * * 3421 0 0 T 5 5478 * 3863 * * 4501 * * * 4421 * * 1512 * * 2012 2527 * * 4444 5 0 * * * * * * 3475 0 0 P 6 * * * 5573 5547 * * 5411 3247 4501 * 4245 863 * 3544 4008 * 4865 * * 6 0 * * * * * * 3475 0 0 Y 7 * * * * 3231 * 5323 3105 3986 * * * * * 2612 * 4475 3867 5470 1360 7 0 * * * * * * 3431 0 0 M 8 * * * * * * * 3597 * 435 2646 * * * * * * * * 5791 8 0 * * * * * * 3380 0 0 T 9 * * * * * * * * * * * * * * * 4930 48 * * * 9 0 * * * * * * 3379 0 0 K 10 * * * * * * * * 772 * * * * * 1797 5581 4583 * * 3966 10 0 * * * * * * 3421 0 0 Y 11 * * * * 947 * * * * * * * * * * * * * * 1055 11 0 * * * * * * 3421 0 0 E 12 * * * 0 * * * * * * * * * * * * * * * * 12 0 * * * * * * 3421 0 0 R 13 4583 * * * 5093 * * 2768 1558 3963 * * * 5448 1895 * 5814 3860 * * 13 0 * * * * * * 3421 0 0 A 14 215 * * * * * * * * * * * * * * * 4583 3373 * * 14 0 * * * * * * 3421 0 0 R 15 * * * * * * 5446 * 4084 * * * * * 152 * * 5773 * * 15 0 * * * * * * 3421 0 0 V 16 * * * * * * * 711 * 2355 * * * * * * * 2368 * * 16 0 * * * * * * 3421 0 0 L 17 3963 * * * * * * 1350 * 1443 4331 * * * * * * 2986 * * 17 12 * 6934 * * * * 3421 0 0 G 18 3812 * * * * 242 * * * * * * * * * 3585 * * * * 18 0 * * * * * 0 3423 0 1000 T 19 1587 * * 3855 * * * 3373 * * * * * * * 4547 1892 2401 * * 19 0 * * * * * 0 3423 0 1000 R 20 * * * * * * * * * * * * * * 96 * * 3962 * * 20 0 * * * * * 0 3423 0 1000 A 21 195 * * 3962 * * * * * * * * * * * 4917 5089 * * * 21 0 * * * * * 0 3423 0 1000 L 22 * * * * 5394 * * 5749 3869 648 5912 * * 2968 4062 * 5400 * * 5443 22 0 * * * * * 0 3423 0 1000 Q 23 * * * * * * * * * * * * * 0 * * * * * * 23 0 * * * * * 0 3423 0 1000 I 24 * * * * 3963 * * 853 * 1387 * * * * * * * * * * 24 0 * * * * * 0 3423 0 1000 A 25 1764 * * * * * * * * * 5089 3963 * 3962 * 951 * 5035 * * 25 0 * * * * * 0 3423 0 1000 M 26 5400 * 3007 * * * * 3563 5865 3344 1377 3700 * 6010 * 3802 5516 * * 3631 26 0 * * * * * 0 3423 0 1000 C 27 * 5461 * * * 497 * * * * * 1897 * * * * * * * * 27 0 * * * * * 0 3423 0 1000 A 28 360 * * * * 4580 * * 3962 * * 5066 * * * 4197 5035 * * * 28 49 4895 * 0 * * 0 3423 1000 1000 P 29 4695 * * * 5016 * * * 4347 6016 * * 644 5807 5837 3422 3962 * * 4917 29 0 * * * * 0 * 3423 0 1000 V 30 3304 * * * * * * 3246 * 3700 4701 * 1731 * * 3963 4583 1884 * * 30 29 5630 * 0 * * * 3421 1000 0 M 31 * * * * 3101 * 5448 3763 * 1463 2890 * * 5924 * 4701 2861 3963 * 4946 31 27 5754 * 3000 193 * * 3421 1000 0 V 32 * * 5630 * * * * 1323 4898 2917 * * * * * * 6022 1327 * * 32 33 5448 * 1585 585 * * 3421 1000 0 E 33 * * 1384 1985 * 4898 * 5630 3209 * * 4517 2806 5995 * * * * * * 33 95 5520 4583 2000 415 * * 3421 1000 0 L 34 * * 6024 * * 3792 * 2442 5398 2574 * 5703 3305 * * 2731 2995 2833 * * 34 19 6243 * 0 * 0 * 3343 1000 1000 E 35 * * 3363 2044 * 4004 * * 2725 * * 4541 3545 4084 * 2533 4701 4385 * * 35 156 3537 5922 1000 1000 * * 3421 1852 0 G 36 5899 4930 4809 2836 * 1366 * * 2247 * * 3309 * * * 4743 4726 * * * 36 201 3986 3903 3231 163 0 * 3379 1746 1000 E 37 * * 4237 2213 * 3443 5411 5466 3907 3690 6201 * * 4627 5993 2581 2564 * * 4542 37 187 3042 * 3104 178 0 * 3405 2231 1765 T 38 3791 * 5023 * * * * 4273 5649 2860 3966 5530 * * 4574 2455 1865 3278 * * 38 97 4962 4922 0 * * * 3421 1515 0 D 39 * * 702 5845 * * 2923 * * * * 4391 * * 5596 3171 4438 * * 6570 39 132 5596 3907 0 * 0 * 3385 1000 1000 P 40 4602 * * * * 4949 * * * * * * 379 * * 2986 * 4986 * * 40 0 * * * * * 0 3258 0 1000 L 41 3876 * * * * * * 1931 * 1040 6223 * * * * * * 2557 * * 41 47 * 4950 * * 0 * 3258 0 1000 L 42 4053 * 1801 3807 * 6069 5033 4939 3353 3386 4698 4649 * 3686 4638 4979 5967 4477 * 5580 42 0 * * * * 0 * 3357 0 1000 I 43 5132 * * * * * * 478 * 4484 3287 * * 3963 * * * 4566 * * 43 0 * * * * * * 3421 0 0 A 44 76 * * * * * * * * * * * * * * 5597 5035 * * * 44 0 * * * * * * 3420 0 0 M 45 5884 * * 2685 3413 * * 4705 2795 3822 2526 5431 * 5816 3284 6013 5748 3569 6394 4918 45 0 * * * * * * 3420 0 0 K 46 6240 * 3959 1935 * 5889 * 5625 2199 3543 5431 4295 * 4068 4481 * * 3659 * 4001 46 0 * * * * * * 3420 0 0 E 47 * * 4699 156 * * * 3959 * * * * * * * * * * * * 47 0 * * * * * * 3420 0 0 L 48 * * * * 2639 * * 4918 * 575 * * * * * * * 3502 * 4420 48 0 * * * * * * 3420 0 0 K 49 4604 * 4098 2540 4577 * 5521 5645 2225 2907 * 5224 * 6513 3209 4990 3954 5133 * 5190 49 0 * * * * * * 3420 0 0 A 50 2610 * * 3259 * * * * 3342 4863 * 2357 * 1971 3222 5548 5645 * * * 50 0 * * * * * * 3420 0 0 R 51 * * 5837 * * 1407 * * 1692 * * 3156 * * 2443 * * * * * 51 0 * * * * * * 3420 0 0 K 52 4647 * * 3959 * * * 3497 1366 3027 3954 * * * 4134 5521 6392 2823 * * 52 0 * * * * * * 3420 0 0 I 53 * * * * * * * 942 * 1910 5838 * * * * * 2782 4306 * * 53 0 * * * * * * 3420 0 0 P 54 * * 3606 * * * * * * * * * 295 * 4699 3954 * * * * 54 0 * * * * * * 3420 0 0 I 55 * * * * 2029 * * 1392 * 1999 3323 * * * * * * 5383 * * 55 0 * * * * * * 3420 0 0 I 56 * * 4792 * * * * 1386 3414 3166 * * * * * 3936 2271 3273 * * 56 0 * * * * * * 3420 0 0 I 57 * * * * * * * 925 * 5521 * * 4918 * * * * 1256 * * 57 0 * * * * * * 3420 0 0 R 58 * * * * * 5489 * 3449 2918 * 4577 * * * 612 * * 4895 * 5383 58 0 * * * * * * 3420 0 0 R 59 * * * * * * * * 5002 * * * * * 46 * * * * * 59 76 4278 * 1585 585 * * 3413 1000 0 Y 60 * * * 5127 5063 * 3368 3166 5213 * * * 5073 * 2782 * 3741 2850 5247 1779 60 43 * 5104 * * * * 3505 0 0 L 61 * * * * 3802 * * * * 602 5045 * * * * * 3119 * 3320 5383 61 0 * * * * 0 * 3444 0 1000 P 62 * * * * * * * * * * * 5049 167 4840 * 4503 * * * * 62 0 * * * * * * 3462 0 0 D 63 * * 1389 3644 * 2538 * * * * * 1595 * * * 4840 * * * * 63 0 * * * * * * 3462 0 0 G 64 * * 3960 * * 399 5974 * 3180 * * * * 5399 * 5194 * * * * 64 0 * * * * * * 3462 0 0 S 65 4523 * 3808 5575 * 4842 * * 1988 * 5887 5348 * 3755 3583 1737 3991 * 6035 * 65 76 4278 * 1000 1000 * * 3462 1000 0 Y 66 * * * 3925 3452 4846 6333 5085 * * * * * * 4628 * 3976 2658 * 989 66 0 * * * * * * 3428 0 0 E 67 * * * 398 * * * * * * 5073 * * 2880 * * * 3726 * * 67 0 * * * * * * 3428 0 0 D 68 * * 900 3838 * * * 4188 * 2985 * 3245 * * 5073 4846 4535 * * * 68 0 * * * * * * 3428 0 0 W 69 * * * * 4516 * * 1898 * 4846 * * * * * * * 2737 1112 4628 69 0 * * * * * * 3428 0 0 G 70 3847 * * 5347 4516 6150 5938 * 3075 * * 4188 1942 * 3287 2060 4164 * * * 70 0 * * * * * * 3428 0 0 V 71 * 6026 * * * * * 2309 * 1624 * * 4188 * * * 5933 1369 * * 71 0 * * * * * * 3428 0 0 D 72 6326 * 1718 3989 * 5025 * * 2614 * 5001 3136 * 4631 3571 3140 * * 4516 * 72 0 * * * * * * 3428 0 0 E 73 * 4784 * 550 * * * * 2948 * * * * 5882 4759 * 3939 * * 4970 73 0 * * * * * * 3416 0 0 L 74 * * * * * * * 3896 * 194 4091 * * * * * * * * * 74 0 * * * * * * 3386 0 0 I 75 * * * 3548 * 2800 4757 1844 4277 2561 3104 * * 5433 * 5396 * 3813 * * 75 0 * * * * * * 3118 0 0 I 76 * * * * * * * 1439 * 4437 2960 * * * 4296 * * 1302 * * 76 0 * * * * * * 2768 0 0 S 77 3228 * * * * * * 1150 * 1977 * * * * * 3446 * 3365 * * 77 0 * * * * * * 2157 0 0 D 78 * * 255 * * * * * * * * 2628 * * * * * * * * 78 0 * * 0 * * * 1895 0 0 //