HHsearch 1.5 NAME c9eauI_ FAM FILE c9eauI_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9eauI_.a3m DATE Sat Apr 26 11:19:51 2025 LENG 158 match states, 158 columns in multiple alignment FILT 7 out of 9 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.3913 -1.4001 SEQ >ss_pred CEEEEECCCCEEEEEECCCEEEEEEEECCEEECEEEEEEEECCHHHHEEEEEEEEEEECCHHHHCHHHHHHHCCCCCCCCCEEECCCEEEEEECCCEEEE ECCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEECCCCCCCC >ss_conf 9025431553142232474211599974644010022233258212002542100020106550335433213310007552322401016970614786 2134788878872141798399999727887774168999974783389666564049 >Consensus RxxxKxexdxxFxvxxdGxixGyAxxvgxkvxkPxHVkGxidxpxLaxlkfxkssxyDlExAxxPxxMrsdaxxytxexpegxYnwhhGavQyxxgrfti pxgxgxxGDSGRPixDNsGrVVaIVLGGanegxrTaLSVvxwxkxxxxkxtpexxxew >c9eauI_ RMCMKIENDCIFEVKLDGKVTGYACLVGDKVMKPAHVKGTIDNPDLAKLTYKKSSKYDLECAQIPVHMKSDASKYTHEKPEGHYNWHHGAVQYSGGRFTI PTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWTKDMVTRVTPEGTEEW >UniRef50_Q80S25(113-270:1241) Structural polyprotein n=153 Tax=Alphavirus RepID=Q80S25_9VIRU E=1e-81 s/c=1.92 id=89% cov=101% RKCMKIESDCIFEVKLDGEVTGYACLVGDKVMKPAHVKGVIQNDELAKLSFKKSSKYDLECAQIPVKMRSDASKYTHEKPEGHYNWHHGAVQYTNGRFTI PTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWNKDMVTRVTPEGSVEW >UniRef50_P03316(105-264:1245) E1 envelope glycoprotein n=116 Tax=WEEV complex RepID=POLS_SINDV E=3e-55 s/c=1.35 id=68% cov=101% RMALKLEADRLFDVKnEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFT IPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWnSKGKTIKTTPEGTEEW >UniRef50_P36329(117-275:1255) E1 envelope glycoprotein n=477 Tax=root RepID=POLS_EEVV3 E=4e-74 s/c=1.75 id=63% cov=101% RMVMKLESDKTFPIMLEGKINGYACVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADVPQNMRADTFKYTHEKPQGYYSWHHGAVQYENGRFTV PKGVGAKGDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNEKGVTvKYTPENCEQW >UniRef50_Q86925(108-267:1244) E1 envelope glycoprotein n=959 Tax=Alphavirus RepID=POLS_AURAV E=2e-71 s/c=1.68 id=64% cov=101% RTALKFEADRTFVGKnEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEVFYNWHHGAVQFSGGRFT IPTGVGGPGDSGRPILDNSGKVVAIVLGGANEVPGTALSVVTWNKKGaAIKTTHEDTVEW >UniRef50_Q8QL52(125-273:1322) E1 envelope glycoprotein n=104 Tax=Alphavirus RepID=POLS_SLDV E=1e-58 s/c=1.52 id=40% cov=94% RISVKRARQSTFPVYHDGAISGYAVLIGSRVFKPAHVKGKFDHPELADIKFQVAEVMDLEAAAYPKCMRDQAAEPATMM-DGVYNGEYGNIQeWRTILYS MRAAEASRGDSGRPFTDNSGKVVGIVLGGGPDGRRTRLSVIGFDKKLKAR--------- >UniRef50_Q993S2(1-36:661) Structural polyprotein (Fragment) n=1 Tax=Seal louse virus RepID=Q993S2_9VIRU E=5e-10 s/c=1.82 id=76% cov=23% ---------------------------------------------------------------------------------------------------- ----------------------AIVLGGANEGERTALSVVTWNKNTVVKVTPEETVEW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * * * * * * * 0 * * * * * 1 0 * * * * * * 1886 0 0 M 2 * * * * * * * 1973 2892 * 1127 * * * * * 2712 * * * 2 0 * * * * * * 1886 0 0 C 3 1716 1910 * * * * * * * * * * * * * 1973 * 2515 * * 3 0 * * * * * * 1886 0 0 M 4 * * * * * * * * * 1716 1181 * * * * * * 1973 * * 4 0 * * * * * * 1886 0 0 K 5 * * * * * * * * 0 * * * * * * * * * * * 5 0 * * * * * * 1886 0 0 I 6 * * * * 2712 * * 1910 * 1614 * * * * 1973 * * * * * 6 0 * * * * * * 1886 0 0 E 7 1973 * * 424 * * * * * * * * * * * * * * * * 7 0 * * * * * * 1886 0 0 N 8 1716 * * * * * * * * * * 2929 * * 1973 1691 * * * * 8 0 * * * * * * 1886 0 0 D 9 * * 424 * * * * * * * * * * 1973 * * * * * * 9 0 * * * * * * 1886 0 0 C 10 * 1910 * * * * * * 2515 * * * * * 1716 1973 * * * * 10 0 * * * * * * 1886 0 0 I 11 * * * * * * * 1910 * 2721 * * * * * * 780 * * * 11 0 * * * * * * 1886 0 0 F 12 * * * * 0 * * * * * * * * * * * * * * * 12 0 * * * * * * 1886 0 0 E 13 * * 2721 1910 * * * * * * * * 1219 * * * * 2712 * * 13 0 * * * * * * 1886 0 0 V 14 * * * * * 2712 * 2515 * * * * * * * * * 572 * * 14 0 * * * * * * 1886 0 0 K 15 * * * * * * * * 810 * 2515 * * * * * * * * 1973 15 524 1716 * 0 * * * 1886 1181 0 L 16 * * * 1716 * * 1973 * * 1181 * * * * * * * * * * 16 0 * * * * * * 1886 0 0 D 17 * * 277 2515 * * * * * * * * * * * * * * * * 17 0 * * * * * * 1886 0 0 G 18 * * * * * 0 * * * * * * * * * * * * * * 18 0 * * * * * * 1886 0 0 K 19 1973 * 2721 2892 * * * * 1124 * * * * * * * * * * * 19 0 * * * * * * 1886 0 0 V 20 * * * * * * * 780 * * * * * * * * * 1259 * * 20 0 * * * * * * 1886 0 0 T 21 * * * * * * * 2721 * * 2712 2515 * * * 1973 1910 * * * 21 0 * * * * * * 1886 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1886 0 0 Y 23 * * * * * * 2721 * * * * * * * * * * * * 237 23 0 * * * * * * 1886 0 0 A 24 0 * * * * * * * * * * * * * * * * * * * 24 0 * * * * * * 1886 0 0 C 25 * 1181 * * * * * * * 2721 * * * * * * * 1296 * * 25 0 * * * * * * 1886 0 0 L 26 1716 * * * * * * * * 941 * * * * * * * 2515 * * 26 0 * * * * * * 1886 0 0 V 27 * * * * * * * 1973 * * 1716 * * * * * * 1181 * * 27 0 * * * * * * 1886 0 0 G 28 * * * 1716 * 524 * * * * * * * * * * * * * * 28 0 * * * * * * 1886 0 0 D 29 * * 1910 * * 1061 * * * * * * * * * 1973 * * * * 29 0 * * * * * * 1886 0 0 K 30 * * * * * * * * 424 * * * * * 1973 * * * * * 30 0 * * * * * * 1886 0 0 V 31 * * * * * * * * * 2515 * * * * * * * 277 * * 31 0 * * * * * * 1886 0 0 M 32 * * * * 1219 * * 2712 * * 1259 * * * * * * * * * 32 0 * * * * * * 1886 0 0 K 33 * * * * * * * * 277 * * * * * 2515 * * * * * 33 0 * * * * * * 1886 0 0 P 34 * * * * * * * * * * * * 0 * * * * * * * 34 0 * * * * * * 1886 0 0 A 35 941 * * * * * * * * 1716 2515 * * * * * * * * * 35 0 * * * * * * 1886 0 0 H 36 * * * * * * 0 * * * * * * * * * * * * * 36 0 * * * * * * 1886 0 0 V 37 * * * * * * * * * * * * * * * * * 0 * * 37 0 * * * * * * 1886 0 0 K 38 * * * 2515 * * * * 277 * * * * * * * * * * * 38 0 * * * * * * 1886 0 0 G 39 * * * * * 0 * * * * * * * * * * * * * * 39 0 * * * * * * 1886 0 0 T 40 * * * * * * * * 1219 * * * * * * * 1199 2892 * * 40 0 * * * * * * 1886 0 0 I 41 * * * * 1973 * * 424 * * * * * * * * * * * * 41 0 * * * * * * 1886 0 0 D 42 * * 209 * * * * * * * * * * 2892 * * * * * * 42 0 * * * * * * 1886 0 0 N 43 * * * * * * 839 * * * * 1181 * * * * * * * * 43 0 * * * * * * 1886 0 0 P 44 * * 1691 * * * * * * * * * 535 * * * * * * * 44 0 * * * * * * 1886 0 0 D 45 2712 * 2929 1360 * * * * * * * * * * * * * 1614 * * 45 0 * * * * * * 1886 0 0 L 46 * * * * * * * * * 0 * * * * * * * * * * 46 0 * * * * * * 1886 0 0 A 47 237 * * * * * * * * * * * * * * 2721 * * * * 47 0 * * * * * * 1886 0 0 K 48 2515 * 1973 * * * * * 810 * * * * * * * * * * * 48 0 * * * * * * 1886 0 0 L 49 * * * * * * * 1973 * 424 * * * * * * * * * * 49 0 * * * * * * 1886 0 0 T 50 * * * * * * * * 446 * * * * * * 2892 2929 * * * 50 0 * * * * * * 1886 0 0 Y 51 * * * * 527 * * * * * * * * * * * 2515 * * 2929 51 0 * * * * * * 1886 0 0 K 52 * * * * * * * * 1181 * * * * 1973 * * 1716 * * * 52 0 * * * * * * 1886 0 0 K 53 * * * * * * * * 424 * * * * * * * * 1973 * * 53 0 * * * * * * 1886 0 0 S 54 1219 * * * * * * * * * * * * * * 810 * * * * 54 0 * * * * * * 1886 0 0 S 55 * * * 1973 * * * * * * * * * * * 424 * * * * 55 0 * * * * * * 1886 0 0 K 56 2721 * * * * * * * 1181 * * * * * * 2712 * 1973 * * 56 0 * * * * * * 1886 0 0 Y 57 * * * * * * * * * * 1973 * * * * * * * * 424 57 0 * * * * * * 1886 0 0 D 58 * * 0 * * * * * * * * * * * * * * * * * 58 0 * * * * * * 1886 0 0 L 59 * * * * * * * * * 524 1716 * * * * * * * * * 59 0 * * * * * * 1886 0 0 E 60 * * * 0 * * * * * * * * * * * * * * * * 60 0 * * * * * * 1886 0 0 C 61 1973 1910 * * 1716 * * * * * * * * * * * * * * 2515 61 0 * * * * * * 1886 0 0 A 62 0 * * * * * * * * * * * * * * * * * * * 62 0 * * * * * * 1886 0 0 Q 63 1973 * 2515 * * * * * 2712 * * * * 1259 * * * * * * 63 0 * * * * * * 1886 0 0 I 64 * * * * * * * 1910 * 1716 * * * * * * * 2515 * 1973 64 0 * * * * * * 1886 0 0 P 65 * * * * * * * * * * * * 0 * * * * * * * 65 0 * * * * * * 1886 0 0 V 66 * * * * * * * * 1973 * * * * 2515 * * 2712 1259 * * 66 0 * * * * * * 1886 0 0 H 67 * 1973 * 2712 * * 2929 * 2892 * * 1614 * * * * * * * * 67 0 * * * * * * 1886 0 0 M 68 * * * * * * * * * * 0 * * * * * * * * * 68 0 * * * * * * 1886 0 0 K 69 * * * * * * * * 1816 * * * * * 482 * * * * * 69 0 * * * * * * 1886 0 0 S 70 2515 * 1973 * * * * * * * * * * * * 810 * * * * 70 0 * * * * * * 1886 0 0 D 71 * * 753 2721 * * * * * * * * * 1973 * * * * * * 71 0 * * * * * * 1886 0 0 A 72 277 * * * * * * * * * * * * * * * 2515 * * * 72 0 * * * * * * 1886 0 0 S 73 1973 * * * 1061 * * * * * * * * * * 1910 * * * * 73 0 * * * * * * 1886 0 0 K 74 * * * 1973 * 2712 * * 1181 * * * * * * * 2721 * * * 74 0 * * * * * * 1886 0 0 Y 75 * * * * * * * * * * * * 1973 * * * * * * 424 75 0 * * * * * * 1886 0 0 T 76 1973 * * * * * * * * * * * * * * * 424 * * * 76 0 * * * * * * 1886 0 0 H 77 * * * * * * 1181 * * * * * * * * 2721 1296 * * * 77 0 * * * * * * 1886 0 0 E 78 * * * 424 * * * * * * 1973 * * * * * * * * * 78 0 * * * * * * 1886 0 0 K 79 * * * * * * 1716 * 1181 * 1973 * * * * * * * * * 79 424 * 1973 * * * * 1886 0 0 P 80 * * * * * * * * * * * * 0 * * * * * * * 80 0 * * * * 0 * 1550 0 1000 E 81 * * 1973 810 * * * * * * * * * 2515 * * * * * * 81 0 * * * * * * 1886 0 0 G 82 * * * * * 239 * * * * * * * * * * * 2712 * * 82 0 * * * * * * 1886 0 0 H 83 * * * * 1716 * 1910 * * * * * * * * * * 1973 * 2515 83 0 * * * * * * 1886 0 0 Y 84 * * * * * * * * * * * * * * * * * * * 0 84 0 * * * * * * 1886 0 0 N 85 * * * * * * * * * * * 277 * * * 2515 * * * * 85 0 * * * * * * 1886 0 0 W 86 * * * * * 1973 * * * * * * * * * * * * 424 * 86 0 * * * * * * 1886 0 0 H 87 * * * 1973 * * 424 * * * * * * * * * * * * * 87 0 * * * * * * 1886 0 0 H 88 * * * * * * 424 * * * * * * * * * * * * 1973 88 0 * * * * * * 1886 0 0 G 89 * * * * * 0 * * * * * * * * * * * * * * 89 0 * * * * * * 1886 0 0 A 90 424 * * * * * * * * * * 1973 * * * * * * * * 90 0 * * * * * * 1886 0 0 V 91 * * * * * * * 1973 * * * * * * * * * 424 * * 91 0 * * * * * * 1886 0 0 Q 92 * * * * * * * * * * * * * 0 * * * * * * 92 424 1973 * 0 * * * 1886 1000 0 Y 93 * * * * 2712 * * * * * * * * * * * * * 1973 755 93 0 * * * * * * 1886 0 0 S 94 * * * 2515 * * * * * * * * * * 1973 1199 2892 * * * 94 0 * * * * * * 1886 0 0 G 95 * * * * * 1199 * * * * * 1691 * * * * 1973 * * * 95 0 * * * * * * 1886 0 0 G 96 * * * * * 424 * 1973 * * * * * * * * * * * * 96 0 * * * * * * 1886 0 0 R 97 * * * * * * * * * 1973 * * * * 424 * * * * * 97 0 * * * * * * 1886 0 0 F 98 * * * * 424 * * * * * * * * * * * * * * 1973 98 0 * * * * * * 1886 0 0 T 99 * * * * * * * * * * * * * * * 1973 424 * * * 99 0 * * * * * * 1886 0 0 I 100 * * * * * * * 810 * * 1973 * * * * * * 2515 * * 100 0 * * * * * * 1886 0 0 P 101 * * * * * * * * * * * * 424 * 1973 * * * * * 101 0 * * * * * * 1886 0 0 T 102 1973 * * * * * * * 2515 * * * * * 2721 * 1256 * * * 102 0 * * * * * * 1886 0 0 G 103 1973 * * * * 424 * * * * * * * * * * * * * * 103 0 * * * * * * 1886 0 0 A 104 1910 * * 1973 * * * * * * * * * * * * * 1061 * * 104 0 * * * * * * 1886 0 0 G 105 1973 * * * * 424 * * * * * * * * * * * * * * 105 0 * * * * * * 1886 0 0 K 106 2515 * * * * 1716 * * 1910 * * * * * * 1973 * * * * 106 0 * * * * * * 1886 0 0 P 107 * * * * * * * * 2515 * * * 1256 * 1299 * * * * * 107 0 * * * * * * 1886 0 0 G 108 * * * * * 0 * * * * * * * * * * * * * * 108 0 * * * * * * 1886 0 0 D 109 * * 0 * * * * * * * * * * * * * * * * * 109 0 * * * * * * 1886 0 0 S 110 * * * * * * * * * * * * * * * 0 * * * * 110 0 * * * * * * 1886 0 0 G 111 * * * * * 0 * * * * * * * * * * * * * * 111 0 * * * * * * 1886 0 0 R 112 * * * * * * * * * * * * * * 0 * * * * * 112 0 * * * * * * 1886 0 0 P 113 * * * * * * * * * * * * 0 * * * * * * * 113 0 * * * * * * 1886 0 0 I 114 * * * * 1973 * * 424 * * * * * * * * * * * * 114 0 * * * * * * 1886 0 0 F 115 * * * * 1910 * * * * 1610 2721 * * * * * 1973 * * * 115 0 * * * * * * 1886 0 0 D 116 * * 0 * * * * * * * * * * * * * * * * * 116 0 * * * * * * 1886 0 0 N 117 * * * * * * * * * * * 0 * * * * * * * * 117 0 * * * * * * 1886 0 0 K 118 * * * * * * * * 1910 * * * * 2515 * 839 * * * * 118 0 * * * * * * 1886 0 0 G 119 * * * * * 0 * * * * * * * * * * * * * * 119 0 * * * * * * 1886 0 0 R 120 * * * * * * * * 1296 * * * * * 755 * * * * * 120 0 * * * * * * 1886 0 0 V 121 * * * * * * * * * * * * * * * * * 0 * * 121 0 * * * * * * 1886 0 0 V 122 * * * * * * * * * * * * * * * * * 0 * * 122 0 * * * * * * 1886 0 0 A 123 390 * * * * 2076 * * * * * * * * * * * * * * 123 0 * * * * * * 1788 0 0 I 124 * * * * * * * 0 * * * * * * * * * * * * 124 0 * * * * * * 1788 0 0 V 125 * * * * * * * * * * * * * * * * * 0 * * 125 0 * * * * * * 1788 0 0 L 126 * * * * * * * * * 0 * * * * * * * * * * 126 0 * * * * * * 1788 0 0 G 127 * * * * * 0 * * * * * * * * * * * * * * 127 0 * * * * * * 1788 0 0 G 128 * * * * * 0 * * * * * * * * * * * * * * 128 0 * * * * * * 1788 0 0 A 129 683 * * * * 2076 * * * * * * * * * * * 2834 * * 129 0 * * * * * * 1788 0 0 N 130 * * 2834 * * * * * * * * 683 2076 * * * * * * * 130 0 * * * * * * 1788 0 0 E 131 * * 2076 390 * * * * * * * * * * * * * * * * 131 0 * * * * * * 1788 0 0 G 132 * * * * * 225 * * * * * * * * * * * 2792 * * 132 0 * * * * * * 1788 0 0 A 133 2204 * * 3046 * * * * * * * * 2792 * 2076 2834 2834 * * * 133 0 * * * * * * 1788 0 0 R 134 * * * * * 2792 * * * * * * * * 225 * * * * * 134 0 * * * * * * 1788 0 0 T 135 * * * * * * * * * * * * * * * * 0 * * * 135 0 * * * * * * 1788 0 0 A 136 390 * * * * * * * * * * * * * 2076 * * * * * 136 0 * * * * * * 1788 0 0 L 137 * * * * * * * * * 0 * * * * * * * * * * 137 0 * * * * * * 1788 0 0 S 138 * * * * * * * * * * * * * * * 0 * * * * 138 0 * * * * * * 1788 0 0 V 139 * * * * * * * * * * * * * * * * * 0 * * 139 0 * * * * * * 1788 0 0 V 140 * * * * * * * 2076 * * * * * * * * * 390 * * 140 0 * * * * * * 1788 0 0 T 141 * * * * * 2076 * * * * 2834 * * * * * 683 * * * 141 0 * * * * * * 1788 0 0 W 142 * * * * 2076 * * * * * * * * * * * * * 390 * 142 218 2834 * 0 * * * 1788 1000 0 T 143 * * 2076 * * * * * * * * 969 * * * 2834 3159 * * * 143 0 * * * * * * 1788 0 0 K 144 * * * 2834 * * * * 218 * * * * * * * * * * * 144 0 * * * * * * 1788 0 0 D 145 * * 2204 * * 2834 * * 939 * * 3046 * * * * * * * * 145 0 * * * * * * 1788 0 0 M 146 * * * * * 1813 * * 2834 2076 2204 * * * * * 3046 * * * 146 225 2792 * 0 * * * 1788 1000 0 V 147 2792 * * * * * * * 2076 * * * * * * * 2834 1064 * * 147 0 * * * * * * 1788 0 0 T 148 2076 * * * * * * 1813 * * * * * * * * 1485 3046 * * 148 218 2834 * 0 * * * 1788 1000 0 R 149 * * * * * * * * 873 * * * * * 1139 * * * * * 149 0 * * * * * * 1788 0 0 V 150 * * * * * * * * * * * * * * * * 1486 1172 * 2328 150 0 * * * * * * 1532 0 0 T 151 * * * * * * * * * * * * * * * * 0 * * * 151 0 * * * * * * 1532 0 0 P 152 * * * * * * 2435 * * * * * 295 * * * * * * * 152 0 * * * * * * 1532 0 0 E 153 * * * 0 * * * * * * * * * * * * * * * * 153 0 * * * * * * 1532 0 0 G 154 * * 2435 2692 * 1117 * * * * * 2328 * * * * * * * * 154 0 * * * * * * 1532 0 0 T 155 * 2328 * * * * * * * * * * * * * 2790 608 * * * 155 0 * * * * * * 1532 0 0 E 156 * * * 955 * * * * * * * * * * * * * 1046 * * 156 0 * * * * * * 1532 0 0 E 157 * * * 320 * * * * * * * * * 2328 * * * * * * 157 0 * * * * * * 1532 0 0 W 158 * * * * * * * * * * * * * * * * * * 0 * 158 0 * * 0 * * * 1532 0 0 //