HHsearch 1.5 NAME c9e9zI_ FAM FILE c9e9zI_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9e9zI_.a3m DATE Sat Apr 26 10:56:44 2025 LENG 153 match states, 153 columns in multiple alignment FILT 8 out of 10 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.9 EVD 0.3945 -1.0156 SEQ >ss_pred CCCEEEEEECCCCEEEEEEEECCEECCEEEEEEEECCHHHHHHEEEEHEEEECCHHHCCHHHHHHHHCCCCCCCCEEECCCEEEEEEECCEEEEECCCCC CCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEECCCCCCCC >ss_conf 9850453320784301599984644010122243357756310110000010106440312211220041017970313400016970633676203478 88788721427983999997278877741689998857731787450245049 >Consensus exdxtFxvxxdGxixGyAxxvgxkvxKPxHVkGxidxpxLAxlkfxkasxyDlExaxxPxxMrsdxxxytxexpxgxYnwhhGavQyxxgrftipxgxgx xGDSGRPixDNxGrVVaIVLGGanegxrTaLSVvtwnkkxxtxkxtxexxxxW >c9e9zI_ ESDKTFPIMLNGQVNGYACVVGGRLMKPLHVEGKIDNEQLAAVKLKKASMYDLEYGDVPQNMKSDTLQYTSDKPPGFYNWHHGAVQYENGRFTVPRGVGG KGDSGRPILDNRGRVVAIVLGGANEGTRTALSVVTWNQKGVTIKDTPEGSEPW >UniRef50_P36329(123-275:1255) E1 envelope glycoprotein n=477 Tax=root RepID=POLS_EEVV3 E=8e-70 s/c=1.73 id=77% cov=101% ESDKTFPIMLEGKINGYACVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADVPQNMRADTFKYTHEKPQGYYSWHHGAVQYENGRFTVPKGVGA KGDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW >UniRef50_Q80S27(120-271:1258) E1 envelope glycoprotein n=564 Tax=Alphavirus RepID=POLS_MIDDV E=1e-53 s/c=1.38 id=65% cov=100% ENDCIFEVKLEGKVTGYACLVGDKVMKPAHVKGVIDNPDLAKLAFKKSSKYDLECAQIPVHMKSDASQFTHEKPEGHYNWHHGAVQYLNGRFTIPTGAGK PGDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWNKDMVT-RITPEGTEEW >UniRef50_Q80S25(119-270:1241) Structural polyprotein n=153 Tax=Alphavirus RepID=Q80S25_9VIRU E=3e-74 s/c=1.83 id=64% cov=100% ESDCIFEVKLDGEVTGYACLVGDKVMKPAHVKGVIQNDELAKLSFKKSSKYDLECAQIPVKMRSDASKYTHEKPEGHYNWHHGAVQYTNGRFTIPTGAGK PGDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWNKDMVT-RVTPEGSVEW >UniRef50_P03316(111-264:1245) E1 envelope glycoprotein n=116 Tax=WEEV complex RepID=POLS_SINDV E=2e-73 s/c=1.79 id=64% cov=101% EADRLFDVKnEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVG GRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW >UniRef50_Q86925(114-267:1244) E1 envelope glycoprotein n=959 Tax=Alphavirus RepID=POLS_AURAV E=4e-70 s/c=1.72 id=58% cov=101% EADRTFVgKNEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEVFYNWHHGAVQFSGGRFTIPTGVG GPGDSGRPILDNSGKVVAIVLGGANEVPGTALSVVTWNKKGAAIKTTHEDTVEW >UniRef50_Q8QL52(135-283:1322) E1 envelope glycoprotein n=104 Tax=Alphavirus RepID=POLS_SLDV E=2e-54 s/c=1.43 id=38% cov=97% ----TFPVYHDGAISGYAVLIGSRVFKPAHVKGKFDHPELADIKFQVAEVMDLEAAAYPKCMR-DQAAEPATMMDGVYNGEYGNIQeWRTILYSMRAAEA SRGDSGRPFTDNSGKVVGIVLGGGPDGRRTRLSVIGFDKKLKAREIAYSEAIPW >UniRef50_Q993S2(1-36:661) Structural polyprotein (Fragment) n=1 Tax=Seal louse virus RepID=Q993S2_9VIRU E=1e-08 s/c=1.69 id=70% cov=24% ---------------------------------------------------------------------------------------------------- ----------------AIVLGGANEGERTALSVVTWNKNTV-VKVTPEETVEW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 0 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1588 0 0 S 2 1513 * * * * * * * * * * 2731 * * * 1003 * * * * 2 0 * * * * * * 1588 0 0 D 3 * * 0 * * * * * * * * * * * * * * * * * 3 0 * * * * * * 1588 0 0 K 4 * 1727 * * * * * * 1525 * * * * * 1513 * * * * * 4 0 * * * * * * 1588 0 0 T 5 * * * * * * * 2139 * 2966 * * * * * * 633 * * * 5 0 * * * * * * 1924 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1924 0 0 P 7 * * 2966 2139 * * * * * * * * 981 * * * * 2853 * * 7 215 2853 * 0 * * * 1924 1000 0 I 8 * * * * * * * 1909 2853 * * * * * * * * 748 * * 8 0 * * * * * * 1924 0 0 M 9 * * * * * * * * 1494 * 1909 2853 * * * * * * * 2058 9 198 2966 * 0 * * * 1924 1000 0 L 10 * * * 1908 * * 2058 * * 1019 * * * * * * * * * * 10 0 * * * * * * 1924 0 0 N 11 * * 687 2001 * * * * * * * 2958 * * * * * * * * 11 0 * * * * * * 1924 0 0 G 12 * * * * * 0 * * * * * * * * * * * * * * 12 0 * * * * * * 1924 0 0 Q 13 2058 * 2966 3123 * * * * 1365 * * * * 2958 * * * * * * 13 0 * * * * * * 1924 0 0 V 14 * * * * * * * 954 * * * * * * * * * 1048 * * 14 0 * * * * * * 1924 0 0 N 15 * * * * * * * 2966 * * 2853 1909 * * * 2058 2139 * * * 15 0 * * * * * * 1924 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 1924 0 0 Y 17 * * * * * * 2966 * * * * * * * * * * * * 198 17 0 * * * * * * 1924 0 0 A 18 0 * * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 1924 0 0 C 19 * 1019 * * * * * * * 2966 * * * * * * * 1401 * * 19 0 * * * * * * 1924 0 0 V 20 1908 * * * * * * * * 1098 * * * * * * * 1909 * * 20 0 * * * * * * 1924 0 0 V 21 * * * * * * * 2058 * * 1908 * * * * * * 1019 * * 21 0 * * * * * * 1924 0 0 G 22 * * * 1908 * 447 * * * * * * * * * * * * * * 22 0 * * * * * * 1924 0 0 G 23 * * 2139 * * 908 * * * * * * * * * 2058 * * * * 23 0 * * * * * * 1924 0 0 R 24 * * * * * * * * 664 * * * * * 1439 * * * * * 24 0 * * * * * * 1924 0 0 L 25 * * * * * * * * * 1909 * * * * * * * 447 * * 25 0 * * * * * * 1924 0 0 M 26 * * * * 1404 * * 2853 * * 1048 * * * * * * * * * 26 0 * * * * * * 1924 0 0 K 27 * * * * * * * * 214 * * * * * 2861 * * * * * 27 0 * * * * * * 1924 0 0 P 28 * * * * * * * * * * * * 0 * * * * * * * 28 0 * * * * * * 1924 0 0 L 29 1098 * * * * * * * * 1340 2861 * * * * * * * * * 29 0 * * * * * * 1924 0 0 H 30 * * * * * * 0 * * * * * * * * * * * * * 30 0 * * * * * * 1924 0 0 V 31 * * * * * * * * * * * * * * * * * 0 * * 31 0 * * * * * * 1924 0 0 E 32 * * * 1909 * * * * 447 * * * * * * * * * * * 32 0 * * * * * * 1924 0 0 G 33 * * * * * 0 * * * * * * * * * * * * * * 33 0 * * * * * * 1924 0 0 K 34 * * * * * * * * 981 * * * * * * * 1908 2139 * * 34 0 * * * * * * 1924 0 0 I 35 * * * * 2058 * * 396 * * * * * * * * * * * * 35 0 * * * * * * 1924 0 0 D 36 * * 176 * * * * * * * * * * 3123 * * * * * * 36 0 * * * * * * 1924 0 0 N 37 * * * * * * 981 * * * * 1019 * * * * * * * * 37 0 * * * * * * 1924 0 0 E 38 * * 1986 2958 * * * * * * * * 692 * * * * * * * 38 0 * * * * * * 1924 0 0 Q 39 2853 * 3155 1494 * * * * * * * * * 2958 * * * 1912 * * 39 0 * * * * * * 1924 0 0 L 40 * * * * * * * * * 0 * * * * * * * * * * 40 0 * * * * * * 1924 0 0 A 41 198 * * * * * * * * * * * * * * 2966 * * * * 41 0 * * * * * * 1924 0 0 A 42 1909 * 2058 * * * * * 1019 * * * * * * * * * * * 42 0 * * * * * * 1924 0 0 V 43 * * * * * * * 2058 * 664 * * * * * * * 2958 * * 43 0 * * * * * * 1924 0 0 K 44 3155 * * * * * * * 372 * * * * * * 3123 * * * * 44 0 * * * * * * 1924 0 0 L 45 * * * * 447 * * * * 2958 * * * * * * 2861 * * * 45 0 * * * * * * 1924 0 0 K 46 * * * * * * * * 1019 * * * * 2058 * * 1908 * * * 46 0 * * * * * * 1924 0 0 K 47 * * * * * * * * 396 * * * * * * * * 2058 * * 47 0 * * * * * * 1924 0 0 A 48 981 * * * * * * * * * * * * * * 1019 * * * * 48 0 * * * * * * 1924 0 0 S 49 * * * 2058 * * * * * * * * * * * 396 * * * * 49 0 * * * * * * 1924 0 0 M 50 2966 * * * * * * * 1455 * 2958 * * * * 2853 * 2058 * * 50 0 * * * * * * 1924 0 0 Y 51 * * * * * * * * * * 2058 * * * * * * * * 396 51 0 * * * * * * 1924 0 0 D 52 * * 0 * * * * * * * * * * * * * * * * * 52 0 * * * * * * 1924 0 0 L 53 * * * * * * * * * 447 1908 * * * * * * * * * 53 0 * * * * * * 1924 0 0 E 54 * * * 0 * * * * * * * * * * * * * * * * 54 0 * * * * * * 1924 0 0 Y 55 2058 2139 * * 1908 * * * * * * * * * * * * * * 1909 55 0 * * * * * * 1924 0 0 G 56 199 * * * * 2958 * * * * * * * * * * * * * * 56 0 * * * * * * 1924 0 0 D 57 2058 * 1909 * * * * * 2853 * * * * 1494 * * * * * * 57 0 * * * * * * 1924 0 0 V 58 * * * * * * * 2139 * 1908 * * * * * * * 1909 * 2058 58 0 * * * * * * 1924 0 0 P 59 * * * * * * * * * * * * 0 * * * * * * * 59 0 * * * * * * 1924 0 0 Q 60 * * * * * * * * 2058 * * * * 1909 * * 2853 1494 * * 60 0 * * * * * * 1924 0 0 N 61 * 2058 * 2853 * * 3155 * 3123 * * 1342 * * * * * * * * 61 0 * * * * * * 1924 0 0 M 62 * * * * * * * * * * 0 * * * * * * * * * 62 0 * * * * * * 1924 0 0 K 63 * * * * * * * * 1398 * * * * * 688 * * * * * 63 396 * 2058 * * * * 1924 0 0 S 64 2486 * * * * * * * * * * * * * * 284 * * * * 64 0 * * * * 0 * 1588 0 1000 D 65 * * 198 2966 * * * * * * * * * * * * * * * * 65 0 * * * * * * 1924 0 0 T 66 1019 * * * * * * * * * * * * 2058 * * 1909 * * * 66 0 * * * * * * 1924 0 0 L 67 2058 * * * 1307 * * * * 2958 * * * * * 2139 * * * * 67 0 * * * * * * 1924 0 0 Q 68 2058 * * * * 2853 * * 1986 * * * * 2053 * * 2966 * * * 68 0 * * * * * * 1924 0 0 Y 69 * * * 2058 3155 * * * * * * * * * * * * * * 627 69 0 * * * * * * 1924 0 0 T 70 * * * * * * * * * * * * 2058 * * * 396 * * * 70 0 * * * * * * 1924 0 0 S 71 2058 * * * * * 1455 * * * * * * * * 1962 2853 * * * 71 0 * * * * * * 1924 0 0 D 72 * * 2958 664 * * * * * * * * * * * * 2058 * * * 72 0 * * * * * * 1924 0 0 K 73 * * * * * * 1908 * 1019 * 2058 * * * * * * * * * 73 0 * * * * * * 1924 0 0 P 74 * * * * * * * * * * 2058 * 396 * * * * * * * 74 0 * * * * * * 1924 0 0 P 75 * * 2058 1019 * * * * * * * * 2958 2861 * * * * * * 75 0 * * * * * * 1924 0 0 G 76 * * * * * 215 * * * * * * * * * * * 2853 * * 76 0 * * * * * * 1924 0 0 F 77 * * * * 1340 * 2139 * * * * * * * * * * 2058 * 2861 77 0 * * * * * * 1924 0 0 Y 78 * * * * * * * * * * * * * * * * * * * 0 78 0 * * * * * * 1924 0 0 N 79 * * * * * * * * * * * 214 * * * 2861 * * * * 79 0 * * * * * * 1924 0 0 W 80 * * * * * 2058 * * * * * * * * * * * * 396 * 80 0 * * * * * * 1924 0 0 H 81 * * * 2058 * * 396 * * * * * * * * * * * * * 81 0 * * * * * * 1924 0 0 H 82 * * * * * * 396 * * * * * * * * * * * * 2058 82 0 * * * * * * 1924 0 0 G 83 * * * * * 0 * * * * * * * * * * * * * * 83 0 * * * * * * 1924 0 0 A 84 396 * * * * * * * * * * 2058 * * * * * * * * 84 0 * * * * * * 1924 0 0 V 85 * * * * * * * 2058 * * * * * * * * * 396 * * 85 0 * * * * * * 1924 0 0 Q 86 * * * * * * * * * * * * * 0 * * * * * * 86 396 2058 * 0 * * * 1924 1000 0 Y 87 * * * * 2853 * * * * * * * * * * * * * 2058 686 87 0 * * * * * * 1924 0 0 E 88 * * * 1909 * * * * * 3155 * * * * 2058 1908 3123 * * * 88 0 * * * * * * 1924 0 0 N 89 * * * * * 1908 * * * * * 1019 * * * * 2058 * * * 89 0 * * * * * * 1924 0 0 G 90 * * * * * 396 * 2058 * * * * * * * * * * * * 90 0 * * * * * * 1924 0 0 R 91 * * * * * * * * * 2058 * * * * 396 * * * * * 91 0 * * * * * * 1924 0 0 F 92 * * * * 396 * * * * * * * * * * * * * * 2058 92 0 * * * * * * 1924 0 0 T 93 * * * * * * * * * * * * * * * 2058 396 * * * 93 0 * * * * * * 1924 0 0 V 94 * * * * * * * 1019 * * 2058 * * * * * * 1909 * * 94 0 * * * * * * 1924 0 0 P 95 * * * * * * * * * * * * 396 * 2058 * * * * * 95 0 * * * * * * 1924 0 0 R 96 2058 * * * * * * * 2861 * * * * * 1962 * 1452 * * * 96 0 * * * * * * 1924 0 0 G 97 2058 * * * * 396 * * * * * * * * * * * * * * 97 0 * * * * * * 1924 0 0 V 98 2139 * * 2058 * * * * * * * * * * * * * 908 * * 98 0 * * * * * * 1924 0 0 G 99 2058 * * * * 396 * * * * * * * * * * * * * * 99 0 * * * * * * 1924 0 0 G 100 2861 * * * * 1340 * * 2139 * * * * * * 2058 * * * * 100 0 * * * * * * 1924 0 0 K 101 * * * * * * * * 1909 * * * 1452 * 1441 * * * * * 101 0 * * * * * * 1924 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * * * * * 1924 0 0 D 103 * * 0 * * * * * * * * * * * * * * * * * 103 0 * * * * * * 1924 0 0 S 104 * * * * * * * * * * * * * * * 0 * * * * 104 0 * * * * * * 1924 0 0 G 105 * * * * * 0 * * * * * * * * * * * * * * 105 0 * * * * * * 1924 0 0 R 106 * * * * * * * * * * * * * * 0 * * * * * 106 0 * * * * * * 1924 0 0 P 107 * * * * * * * * * * * * 0 * * * * * * * 107 0 * * * * * * 1924 0 0 I 108 * * * * 2058 * * 396 * * * * * * * * * * * * 108 0 * * * * * * 1924 0 0 L 109 * * * * 2139 * * * * 1305 2966 * * * * * 2058 * * * 109 0 * * * * * * 1924 0 0 D 110 * * 0 * * * * * * * * * * * * * * * * * 110 0 * * * * * * 1924 0 0 N 111 * * * * * * * * * * * 0 * * * * * * * * 111 0 * * * * * * 1924 0 0 R 112 * * * * * * * * 2139 * * * * 2861 2958 981 * * * * 112 0 * * * * * * 1924 0 0 G 113 * * * * * 0 * * * * * * * * * * * * * * 113 0 * * * * * * 1924 0 0 R 114 * * * * * * * * 1401 * * * * * 686 * * * * * 114 0 * * * * * * 1924 0 0 V 115 * * * * * * * * * * * * * * * * * 0 * * 115 0 * * * * * * 1924 0 0 V 116 * * * * * * * * * * * * * * * * * 0 * * 116 0 * * * * * * 1924 0 0 A 117 419 * * * * 1989 * * * * * * * * * * * * * * 117 0 * * * * * * 1889 0 0 I 118 * * * * * * * 0 * * * * * * * * * * * * 118 0 * * * * * * 1889 0 0 V 119 * * * * * * * * * * * * * * * * * 0 * * 119 0 * * * * * * 1889 0 0 L 120 * * * * * * * * * 0 * * * * * * * * * * 120 0 * * * * * * 1889 0 0 G 121 * * * * * 0 * * * * * * * * * * * * * * 121 0 * * * * * * 1889 0 0 G 122 * * * * * 0 * * * * * * * * * * * * * * 122 0 * * * * * * 1889 0 0 A 123 694 * * * * 1989 * * * * * * * * * * * 2945 * * 123 0 * * * * * * 1889 0 0 N 124 * * 3304 * * * * * * * * 628 1989 * * * * * * * 124 0 * * * * * * 1889 0 0 E 125 * * 1989 419 * * * * * * * * * * * * * * * * 125 0 * * * * * * 1889 0 0 G 126 * * * * * 210 * * * * * * * * * * * 2882 * * 126 0 * * * * * * 1889 0 0 T 127 2459 * * 3302 * * * * * * * * 2882 * 1989 2945 2326 * * * 127 0 * * * * * * 1889 0 0 R 128 * * * * * 2882 * * * * * * * * 210 * * * * * 128 0 * * * * * * 1889 0 0 T 129 * * * * * * * * * * * * * * * * 0 * * * 129 0 * * * * * * 1889 0 0 A 130 419 * * * * * * * * * * * * * 1989 * * * * * 130 0 * * * * * * 1889 0 0 L 131 * * * * * * * * * 0 * * * * * * * * * * 131 0 * * * * * * 1889 0 0 S 132 * * * * * * * * * * * * * * * 0 * * * * 132 0 * * * * * * 1889 0 0 V 133 * * * * * * * * * * * * * * * * * 0 * * 133 0 * * * * * * 1889 0 0 V 134 * * * * * * * 1989 * * * * * * * * * 419 * * 134 0 * * * * * * 1889 0 0 T 135 * * * * * 1989 * * * * 2945 * * * * * 694 * * * 135 0 * * * * * * 1889 0 0 W 136 * * * * 1989 * * * * * * * * * * * * * 419 * 136 0 * * * * * * 1889 0 0 N 137 * * 1989 * * * * * * * * 419 * * * * * * * * 137 0 * * * * * * 1889 0 0 Q 138 * * * 2945 * * * * 576 * * * * 3349 * 3304 * * * * 138 0 * * * * * * 1889 0 0 K 139 * * 2459 * * * * * 481 * * 3302 * * * * * * * * 139 0 * * * * * * 1889 0 0 G 140 * * * * * 1105 * * * 1989 2459 * * * * * 3302 * * * 140 0 * * * * * * 1889 0 0 V 141 2882 * * * * * * * 1502 * * * * * * * * 968 * * 141 154 * 3302 * * * * 1889 0 0 T 142 1401 * * * * * * * * * * * * * * * 686 * * * 142 372 * 2139 * * 0 * 1924 0 1000 I 143 * * * * * * * 1232 * * * * * * 1853 * * 1750 * * 143 0 * * * * 0 * 1868 0 1071 K 144 * * * 1989 * * * * 820 * * * * * 2459 * * * * * 144 0 * * * * * * 1889 0 0 D 145 * * 3349 * * * * 1550 * * * * * * * * 2078 2369 * 2945 145 0 * * * * * * 1889 0 0 T 146 1989 * * * * * * * * * * * * * * * 419 * * * 146 0 * * * * * * 1889 0 0 P 147 * * * * * * 2882 * * * * * 707 * * * * * * 1989 147 0 * * * * * * 1889 0 0 E 148 * * * 419 * * * * * * * * * * * 1989 * * * * 148 0 * * * * * * 1889 0 0 G 149 * * 2882 1501 * 1391 * * * * * 2945 * * * * * * * * 149 0 * * * * * * 1889 0 0 S 150 1989 2945 * * * * * * * * * * * * * 2394 1224 * * * 150 0 * * * * * * 1889 0 0 E 151 * * * 1255 * * * 1989 * * * * * * * * * 1603 * * 151 0 * * * * * * 1889 0 0 P 152 * * * 943 * * * * * * * * 1515 2945 * * * * * * 152 0 * * * * * * 1889 0 0 W 153 * * * * * * * * * * * * * * * * * * 0 * 153 0 * * 0 * * * 1889 0 0 //