HHsearch 1.5 NAME c9dzqF_ FAM FILE c9dzqF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9dzqF_.a3m DATE Sat Dec 7 09:33:29 2024 LENG 50 match states, 50 columns in multiple alignment FILT 94 out of 96 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.5167 3.7991 SEQ >ss_pred CCCCCCCEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCC >ss_conf 98664441668998789997378768888844022203401233144109 >Consensus igsxyxxWQkPGxaPxllIyxxsxrxsGvPxRFSxxxsxxDxsltxxxvx >c9dzqF_ IGTNAVDWQFPGTAPRLLIFNDNQRPSGVPDRFSYYCATWDDSLNGPVVF >UniRef50_UPI0000E8110C(35-81:119) PREDICTED: similar to immunoglobulin lambda chain n=3 Tax=Gallus gallus RepID=UPI0000E8110C E=6e-06 s/c=1.10 id=41% cov=68% -GSYYYGWyqqKSPGSAPVTVIYDNTNRPSNIPSRFS---------------- >UniRef50_UPI00005A4A70(29-100:150) PREDICTED: similar to Ig lambda chain V-IV region Bau n=1 Tax=Canis lupus familiaris RepID=UPI00005A4A70 E=3e-07 s/c=0.78 id=45% cov=98% LGKRYAYWyqHKPSQAPVLLINKNNELGSGIPDRFSgsnsgntatltisgaraedeadYYCQSYDSSGNAHS-- >UniRef50_P06315(53-98:115) Ig kappa chain V region EV15 n=33 Tax=Tetrapoda RepID=KV501_HUMAN E=4e-08 s/c=1.29 id=37% cov=60% -----MNWyqQKPGEAAIFIIQEATTLVPGIPPRFS---------------- >UniRef50_UPI0000D9D5DA(195-239:253) PREDICTED: immunoglobulin kappa constant n=1 Tax=Macaca mulatta RepID=UPI0000D9D5DA E=5e-08 s/c=1.31 id=33% cov=86% ---NSLAWyqQKPGKDPWFLIYGGYNRATTIPEGFSGQGSETDFSVT----- >UniRef50_UPI0000D9C888(170-205:242) PREDICTED: similar to Ig lambda-1 chain V regions MOPC 104E/RPC20/J558/S104 precursor n=1 Tax=Macaca mulatta RepID=UPI0000D9C888 E=2e-05 s/c=1.39 id=45% cov=66% --SNYADWfqQKPNQVPRGLIGDNTYRNPNVPERFS---------------- >UniRef50_UPI0000DC014F(70-119:138) UPI0000DC014F related cluster n=3 Tax=Rattus norvegicus RepID=UPI0000DC014F E=6e-09 s/c=1.24 id=39% cov=66% -GKHYLSWyqQRPGQTTKALIYHASVRTDGVPTRF----------------- >UniRef50_UPI0000F2B7BA(56-105:144) PREDICTED: similar to This CDS feature is included to show the translation of the corresponding V_region. Presently translation qualifiers on V_region features are illegal n=1 Tax=Monodelphis domestica RepID=UPI0000F2B7BA E=5e-08 s/c=1.18 id=37% cov=92% VGTSMAWYQhKPGQAPQLLIFGASALASGAPVQFQGRGSRLDFTLT----- >UniRef50_A2KFE9(52-99:143) Immunglobulin light chain variable region (Fragment) n=10 Tax=Mus musculus RepID=A2KFE9_MOUSE E=3e-05 s/c=1.04 id=42% cov=62% ----YMHWyqQKPDTSPKIWIYDTSKLASGVPARFS---------------- >UniRef50_Q65ZI1(31-79:262) Anti-HIV-1 reverse transcriptase single-chain variable n=8 Tax=Mus musculus RepID=Q65ZI1_MOUSE E=2e-05 s/c=1.02 id=35% cov=96% --SDFLHWyqQKSHESPRLLIKYASQSISGIPSRFSGSGSGSDFTLSINSV- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 706 * 2926 * * * * * * * 1970 * * 1 0 * * * * * * 2787 0 0 G 2 3764 * * * * 264 * * * * * * * * * 3418 * * * * 2 0 * * * * * * 3004 0 0 T 3 * * 4058 6305 * 5647 * 5889 3848 * 5066 2855 * * 3710 1224 3066 * * 5109 3 0 * * * * * * 3265 0 0 N 4 * * 5742 6409 * 4928 4717 6344 3760 5364 * 1304 * 5616 5611 2814 5029 * * 2560 4 0 * * * * * * 3252 0 0 A 5 4751 * 4831 5699 5288 4997 * * * * 4433 3992 * 6102 * 3363 * * * 665 5 14 6646 * 0 * * * 3223 1000 0 V 6 2978 * * * * * * 4330 * 1764 3735 * 3920 * * 6320 4943 1805 * 4142 6 0 * * * * * * 3305 0 0 D 7 2726 7192 4309 * 6271 3983 2853 6425 * * * 2453 * 4482 5231 2317 6489 * 4532 4153 7 0 * * * * * * 3288 0 0 W 8 * * * * * * * * * * * * * * * * * * 91 4038 8 3851 104 * 1021 979 * * 3288 3126 0 Q 9 * * * 5746 * * 5285 * 4598 * * * * 129 * * * * * * 9 78 4253 * 0 * * * 3326 1506 0 F 10 6487 * * 6593 6983 * 4298 * 655 3534 * 6819 * * 3584 6446 3951 6671 * 5641 10 20 6198 * 0 * * * 3326 1000 0 P 11 5310 * * 5584 * * 6524 * * 4745 * * 335 6123 5910 3891 6097 * * * 11 0 * * * * * * 3326 0 0 G 12 * * 5259 5851 * 252 5517 * * * * 4961 * * 6628 4789 * 5910 * * 12 0 * * * * * * 3326 0 0 T 13 5977 * * 3185 * 4568 * * 3063 6622 6689 * * 1389 2997 3406 3459 * * * 13 0 * * * * * * 3326 0 0 A 14 711 * 5269 * * 5466 * 6124 * * * * 5131 * 5563 2420 4408 4550 * * 14 0 * * * * * * 3326 0 0 P 15 5233 * * * * * * * * 4907 * * 150 * * * 5514 5858 * * 15 0 * * * * * * 3326 0 0 R 16 * * * 6808 * * * 5233 1608 * * * * 4021 2000 6237 3572 2267 5660 * 16 0 * * * * * * 3326 0 0 L 17 4844 * * * 4431 4298 * 4955 * 768 4133 * 6043 * 7013 * 2647 6814 * * 17 0 * * * * * * 3326 0 0 L 18 * * * * * * * 3795 * 530 4648 * * * * * * 2574 5192 * 18 0 * * * * * * 3326 0 0 I 19 * * * * * * * 167 * 6039 * * * * * * 4907 4044 * * 19 49 * 4907 * * * * 3326 0 0 F 20 * * 5697 * 3992 5691 4976 * 4758 * * 4587 * 5133 5585 4403 * * * 532 20 0 * * * * 0 * 3277 0 1000 N 21 6622 4907 2321 3752 7137 2692 4541 * 3527 5960 * 3700 * 6504 4738 3207 * * 4624 3318 21 0 * * * * * * 3326 0 0 D 22 1928 * 2869 * * 3252 * 5797 * * * 2684 * * * 5436 2410 3177 * * 22 0 * * * * * * 3326 0 0 N 23 * * 4074 7173 6305 5334 * * * 6190 * 1943 * * 4440 1188 3280 * * 4857 23 0 * * * * * * 3326 0 0 Q 24 4329 * 4994 3535 * * * 5034 3007 * 6124 1848 * 4218 5858 2703 3145 5029 * 5837 24 0 * * * * * * 3326 0 0 R 25 * 3945 * * * * 6354 * 5579 2184 * 5630 * 4007 891 4778 * 6124 6690 * 25 0 * * * * * * 3326 0 0 P 26 2228 * 4800 7342 * 5755 3466 4778 6305 6515 * 5111 1332 4352 5283 * 5514 4817 * 5849 26 0 * * * * * * 3326 0 0 S 27 5308 * 4548 * * 5851 * * * 5226 * * 3632 * * 546 3296 6622 * 6599 27 0 * * * * * * 3326 0 0 G 28 * * 5565 6123 * 199 * * * * * 4325 * * * 6506 5660 * 6273 * 28 0 * * * * * * 3326 0 0 V 29 4836 * * * * * * 1473 * * * * * * * * 3179 1017 * * 29 0 * * * * * * 3326 0 0 P 30 4779 * * * * * * * * 6423 * * 127 * * 4789 * * * * 30 0 * * * * * * 3329 0 0 D 31 2709 * 1551 3146 * * * * * * * 4304 5230 6727 * 2109 5512 4253 * * 31 0 * * * * * * 3329 0 0 R 32 * * * * * 4627 6396 * 4907 6593 * * * 4110 241 * * * * * 32 0 * * * * * * 3329 0 0 F 33 * * * * 55 * * 5864 * * * * * * * * * 5640 * * 33 0 * * * * * * 3329 0 0 S 34 * * * * * * * * * * * * * 4316 * 140 4559 * * * 34 914 1091 * 4474 66 * * 3303 2525 0 Y 35 * * * * * 1084 * * * * * * * * * 5564 * * * 980 35 24 5950 * 4585 61 * * 3165 1000 0 Y 36 * * * * 3276 * * * * * * * * 4985 4733 1511 5267 * * 1149 36 0 * * * * * * 3165 0 0 C 37 * 934 * 5650 * 1290 * * * * * * * * 4380 * * * * * 37 0 * * * * * * 3165 0 0 A 38 3806 * 6411 4805 6317 4380 5185 * * * * * * 1831 * 966 * * * * 38 0 * * * * * * 3165 0 0 T 39 5200 5913 5022 4985 * 1635 * * * 6377 5239 5102 * 6422 4733 1466 4859 4096 * * 39 0 * * * * * * 3165 0 0 W 40 4939 * * 5706 5187 * 5239 * 5022 3653 5216 * * * * 4473 1495 6168 2715 2388 40 0 * * * * * * 3165 0 0 D 41 * * 170 * * 4868 * * * * * * * 5215 * * 5022 5706 * * 41 0 * * * * * * 3165 0 0 D 42 5022 * 4347 * 1299 5215 * * * 5464 * 4167 * * * 1587 * 5239 * 4343 42 0 * * * * * * 3165 0 0 S 43 * * 5406 * * * * * * * * 5649 * * * 947 1192 * * * 43 0 * * * * * * 3204 0 0 L 44 5737 * * * * 2722 * 5144 * 717 * 4990 * * * 3778 6205 4985 * 4520 44 0 * * * * * * 3208 0 0 N 45 4428 * 4485 5960 * 4710 * * 3576 * * 3998 * 4900 * 1959 1260 * * * 45 0 * * * * * * 3210 0 0 G 46 1867 * * * * 2388 2510 2202 * * * * 5162 * * 4178 * 4091 * * 46 0 * * * * * * 2970 0 0 P 47 * * * * * 3239 1522 * * 4267 * 2885 2387 * * 4193 4328 * * 3991 47 0 * * * * * * 2935 0 0 V 48 * * * * * 4004 * 4773 * * 4086 * 4236 * * 1672 1490 3067 * * 48 0 * * * * * * 2926 0 0 V 49 * * * 4440 * * * * * 3782 * * * * * * * 182 * * 49 0 * * * * * * 2660 0 0 F 50 * * * * 2152 * * * * 368 * * * * * * * * * * 50 0 * * 0 * * * 1899 0 0 //