HHsearch 1.5 NAME c9d90F_ FAM FILE c9d90F_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9d90F_.a3m DATE Sat May 3 12:16:34 2025 LENG 130 match states, 130 columns in multiple alignment FILT 60 out of 62 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4153 -0.6917 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9038999999996324679999999999999999999999888779999999999751243454206586613434541121347655332104520888 999999766999999999999999765229 >Consensus axxxxxxxlgxlxaagsxmgaasxaltvQxxxllllxltvwGiKxLqaRvxalExylkdQxllxxwGCxxkxiChTxvpwnxswxnxsxxxiWxNmTWqq WekxIxnxtxxIxxlLeeAqxQQekNxxeL >c9d90F_ AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQ WDKEISNYTQIIYGLLEESQNQQEKNEQDL >UniRef50_Q699U6(507-657:840) Env protein n=3 Tax=Primate lentivirus group RepID=Q699U6_SIVCZ E=3e-25 s/c=0.76 id=50% cov=101% AAPLALGFLGLLSAAGTAMGSAATALTLQSQTLLagivqqqqklleaveaqqhLLGLTVWGVKNLNARLTALETYLRDQAIMSNWGCAFKQICHTAVTWQ QACGNnsRCPTPQWENMTWHTWERQVDNLTDHIDNLLREAQEQQEKNVHDL >UniRef50_Q99FH6(514-656:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=8e-37 s/c=1.08 id=48% cov=95% ----AFSILALLSGAGAAMGSASVALTIQAQSLngrasassnrmllklvetqsALLQLTVWGVKNLQVRVATIEGYLEEQAKLASIGCANMQICRTIVPW NKTWGE---EDPWQNMTWKQWHERVRNYTDIIEADLVEAYDLQEENEKKL >UniRef50_Q3Y655(5-104:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=1e-13 s/c=0.77 id=46% cov=60% --------------------------------------------------SALERYLKDQQLLGIWGCSGNSSAPLLCLGTLV-GVINLSMIFGRTCLgC SGIEKLSNYTNTIYKLLEDSQIQQDNNEK-- >UniRef50_B7FCA6(547-689:884) Env protein n=2 Tax=Simian immunodeficiency virus RepID=B7FCA6_SIVCZ E=3e-37 s/c=1.08 id=48% cov=96% ---IVLGILGFLGLAGSAMGTVSTVLTIQSQHLLagilqqqknllelvekqqeLLRLTIWGVKNLQARLSAIEGFLEDQLKLKQWGCELTQVCHTNVPWN ESW---NATPNWNNETWQHWYRRTDELQANISVLLVEAHNTEQKNMFEL >UniRef50_Q64FP6(39-106:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=4e-06 s/c=0.78 id=50% cov=29% ----------------------------------------------------------------------------------------LNEIWNNMTWQP WDKEISNFHTDIYSLIEDRRTSRKR----- >UniRef50_Q64G66(29-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=1e-15 s/c=1.20 id=45% cov=55% -------------------------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQ WNKKISNYTGTIYKLLNES----------- >UniRef50_Q64G85(14-79:145) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G85_9HIV1 E=7e-11 s/c=1.04 id=52% cov=45% -----------------------------------------GIKQLHARVLALERYLKDQQLLRDLGLLWKTHLHHCCAlGTVVGGNRTKDYIWDNMTW- ------------------------------- >UniRef50_Q9DKV4(558-705:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=4e-25 s/c=0.78 id=30% cov=94% ---IMLAIMAIVAAAGASLGVAnaiqqsytrdavqtlANATAVQQQVLeasyAMIQHVAKGIRILEARVARMEVMMDRMMLYQEVDCwHYHQYCVTSTRA DIV-NYINWTRFKDNCTWQEWEREISAHEGNITILLKESaritQLAQQK----- >UniRef50_Q64G54(17-105:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=4e-14 s/c=0.89 id=31% cov=68% -----------------------------------------GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWS AIEKLIITQT-HYTGCLKNRKTSRNKLKRDL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1996 0 0 V 2 2380 * * * 3398 * * 2680 * * * * * * * * * 844 * * 2 0 * * * * * * 2173 0 0 G 3 * * * * * 596 * * * * * * 2352 * * 2811 * * * * 3 0 * * * * * * 2173 0 0 I 4 * * * * * * * 1100 * 995 4970 * * * * * * * * * 4 0 * * * * * * 2584 0 0 G 5 2395 * * * * 1020 * * * * 2846 * * * * * * 2493 * * 5 0 * * * * * * 2648 0 0 A 6 2007 * * * 3402 * * 4767 * 894 3615 * * * * * * * * * 6 0 * * * * * * 2672 0 0 V 7 2926 * * * 4929 1395 * * * 2179 * * * * * 4122 4767 2832 * * 7 0 * * * * * * 2672 0 0 F 8 * * * * 708 * * 2019 * 3117 * * * * * * * 5259 * * 8 0 * * * * * * 2672 0 0 L 9 * * * * * * * 3647 * 412 2926 * * * * * * 4750 * * 9 0 * * * * * * 2672 0 0 G 10 2144 * * * * 370 * * * * * * * * * * * * * * 10 0 * * * * * * 2672 0 0 F 11 * * * * 618 * * 2926 * 2888 * * * * * * * 3615 * * 11 0 * * * * * * 2672 0 0 L 12 * * * * * * * * * 204 * * * * * * * 2926 * * 12 0 * * * * * * 2672 0 0 G 13 2158 * * * * 1577 * * * * * * * * * 1182 * * * * 13 0 * * * * * * 2672 0 0 A 14 454 * * * * 4122 * * * 4116 * * * * * * 2691 * * * 14 0 * * * * * * 2672 0 0 A 15 0 * * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 2700 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 2700 0 0 S 17 2737 * * * * 5003 * * * * * * * * * 812 2004 * * * 17 0 * * * * * * 2861 0 0 T 18 1028 * * * * * * * * * * * * * * 3629 1396 4355 * * 18 0 * * * * * * 2861 0 0 M 19 * * * * * * * * * 3624 258 * * * * * * 3596 * * 19 0 * * * * * * 2967 0 0 G 20 * * * * * 169 * * * * * * * 3596 * 5177 * * * * 20 0 * * * * * * 2967 0 0 A 21 765 * * * * * * * * 4779 * * * * * 2357 3336 3624 * * 21 0 * * * * * * 2967 0 0 A 22 701 * * * * * * * * 3596 * * * * 4429 * * 1967 * * 22 122 3624 * 3907 100 * * 2967 1000 0 S 23 1327 * * * * 4501 * * * * * * * * * 843 * * * * 23 0 * * * * * * 2967 0 0 M 24 * * * * * * * 3275 * 4535 4575 2610 * * * * 1254 2129 * * 24 0 * * * * * * 2967 0 0 T 25 787 * * * * 4501 * 3862 * * * * * * * * 2054 3906 * * 25 0 * * * * * * 2967 0 0 L 26 * * * * * * * * * 258 * * * * * * 2610 * * * 26 0 * * * * * * 2967 0 0 T 27 2064 * * * * * * * * * * * * * * 4280 495 * * * 27 0 * * * * * * 2967 0 0 V 28 2297 * * * * 5622 * 2759 * 4751 * * * * * * * 758 * * 28 0 * * * * * * 2981 0 0 Q 29 * * * 4425 * * * * * * * * * 122 4860 * * * * * 29 0 * * * * * * 2981 0 0 A 30 1552 * * * * * * * * * * * * 2641 * 1295 3457 * * * 30 0 * * * * * * 2981 0 0 R 31 * * * 3624 * * 3951 * * * * * * 1498 1093 4989 * * * * 31 0 * * * * * * 2981 0 0 N 32 4886 * 4557 * * 5383 2750 * * * * 4489 * 2320 * 2482 2583 2641 * * 32 0 * * * * * * 2981 0 0 L 33 * * * * * * 4425 * * 213 * * * * * 5464 * 3873 * * 33 318 2339 * 2841 217 * * 2981 1699 0 L 34 2339 * * * * * * * * 381 * * * * * * * 4869 * * 34 1930 439 * 4248 78 * * 2981 2522 0 L 35 * * * * * * * * * 498 1775 * * * * * * * * * 35 0 * * * * * * 3015 0 0 L 36 * * * * * * * 3751 * 323 * 4413 * * * * * 3652 * * 36 0 * * * * * * 3123 0 0 K 37 * * * * * 4819 * * 2489 * * * * 1020 2173 4413 5346 * * * 37 0 * * * * * * 3123 0 0 L 38 * * * * * * 2701 * * 241 * * * * * * * * * * 38 0 * * * * * * 3123 0 0 T 39 * * * * * * * 3652 * * * * * * * 1835 821 3751 * * 39 0 * * * * * * 3123 0 0 V 40 2464 * * * * 4400 * 2186 * * * * * * * * * 858 * * 40 70 * 4400 * * * * 3108 0 0 W 41 * * * * * * * * 2660 * * * * * * * * * 265 6680 41 0 * * * * 0 * 3049 0 1000 G 42 * * * * * 0 * * * * * * * * * * * * * * 42 0 * * * * * * 3369 0 0 I 43 5611 * * * * * 3809 667 * * * * * * * * 4218 2155 * * 43 0 * * * * * * 3369 0 0 K 44 * * * * * * * * 323 * * * * * 2317 * * * * * 44 0 * * * * * * 3369 0 0 Q 45 * * * * * * * 2846 * * * 1723 * 1022 * * 3931 * * * 45 0 * * * * * * 3369 0 0 L 46 3932 * * * * * * * * 98 * * * * * * * * * * 46 0 * * * * * * 3371 0 0 Q 47 * * * 2854 * * 3824 * * * * 3297 3932 841 3928 * * * * * 47 0 * * * * * * 3371 0 0 A 48 421 * * * * 3932 * * * * * * * * * * 2721 4795 * * 48 0 * * * * * * 3371 0 0 R 49 * * * * * * * * 3592 * * * * * 125 * * * * * 49 0 * * * * * * 3371 0 0 V 50 * * * * * * * 6231 * 2031 4828 * * * * 3950 * 639 * * 50 0 * * * * * * 3420 0 0 L 51 2573 * * * * * * * * 937 * * * 5385 * 3938 2180 * * * 51 0 * * * * * * 3440 0 0 A 52 579 * * * * 2923 * * * * * * * * 2906 5568 4504 * * * 52 0 * * * * * * 3436 0 0 V 53 * 4028 * * * * * 2196 * 1357 3798 * * * * 5522 * 2307 * 4863 53 0 * * * * * * 3647 0 0 E 54 * * * 303 * 3393 * * 4724 * * * * * 4863 * * * 5522 * 54 0 * * * * * * 3647 0 0 R 55 4013 * * 5828 * 3697 * * 1374 * * 5551 * * 1813 6630 3845 3798 * * 55 32 5522 * 0 * * * 3647 1000 0 Y 56 * * * * 4788 * * 2948 * 3248 3798 * * * * * 3991 * * 751 56 0 * * * * * * 3647 0 0 L 57 * * * * * * * 3656 * 772 3712 * 3214 * * 5441 * 3583 * 4489 57 0 * * * * * * 3903 0 0 R 58 5526 * 2823 3170 * 4489 * * 1108 * * * * 3595 2893 * * * * * 58 0 * * * * * * 3903 0 0 D 59 * * 795 4967 * 3214 6283 4489 * * * 3556 * * 2823 * * * * * 59 0 * * * * * * 3903 0 0 Q 60 * * * * * * * * * * 2823 4489 * 501 * 3214 * * * * 60 0 * * * * * * 3903 0 0 Q 61 2300 * * 6388 * * * * * 5536 2823 * 4575 1450 * 3561 3214 5534 * * 61 0 * * * * * * 3903 0 0 L 62 3214 * * * 6698 * * 4111 3597 904 * * * 4654 4098 4489 * 3944 * * 62 0 * * * * * * 3903 0 0 L 63 * * * * * * * * * 559 5185 * 3214 * * 4489 * * * 2823 63 0 * * * * * * 3903 0 0 G 64 4309 * * * * 1990 3944 * 4170 * * 2593 * 3712 2513 3114 * 4489 * * 64 0 * * * * * * 3903 0 0 I 65 6349 * 3270 2548 4489 * * 2100 * 2977 6746 3337 * 3699 * 3304 5526 * * * 65 0 * * * * * * 3903 0 0 W 66 * * * * 5526 4489 * 4967 * 2058 * * * * * 4575 * 3712 905 6746 66 0 * * * * * * 3903 0 0 G 67 * * 2840 * * 217 * * * * * * * * * * * * * * 67 0 * * * * * * 3995 0 0 C 68 * 285 * * 5717 * * * * 2644 * * * * * * * * * * 68 217 2840 * 0 * * * 3995 1260 0 S 69 2042 * * 4259 * * 2840 * 4570 2644 * * * 5849 * 1532 * * * * 69 0 * * * * * * 3995 0 0 G 70 * 4449 5892 * 3338 1663 * * * 4606 * 3853 * * * * * * 1896 2798 70 0 * * * * * * 4060 0 0 K 71 5517 * * * * * 3714 * 740 * 4466 5020 * 3886 3187 6845 4606 * * * 71 102 3867 * 0 * * * 4060 1554 0 L 72 6008 * * * * * 2782 6436 * 2284 * * * 1412 * 4077 2555 5892 * * 72 0 * * * * * * 4060 0 0 I 73 * * * * * * 2904 1416 * 4807 * * * * * 3632 * 2035 * 2929 73 0 * * * * * * 4149 0 0 C 74 3981 382 * * * * 4807 * * 2904 * * * * * * * * * * 74 0 * * * * * * 4149 0 0 C 75 * 6636 * * * * 1030 * * * * * 3897 * 5114 * 2343 2954 * 3682 75 0 * * * * * * 4238 0 0 T 76 * 4660 * * * * 2983 * * 4109 * * * * * 4739 437 * * * 76 0 * * * * * * 4322 0 0 N 77 3870 2590 6984 * * * * 5054 * 4918 5330 2663 * * 5941 1907 2260 * 5643 * 77 0 * * * * * * 4322 0 0 V 78 4660 2290 * * * * * * * * * * * * * * 2981 668 * * 78 0 * * * * * * 4322 0 0 P 79 3977 * * 3734 * * * * 4727 3783 * * 886 * 2981 * 3590 * * * 79 122 5541 4074 0 * * * 4322 1000 0 W 80 3921 * * * * 2383 * * * 4238 * * * * * 3910 * 5012 757 * 80 0 * * * * * 0 4221 0 1453 N 81 * * 4110 3130 * 4114 * 5585 5995 * * 1126 * 4466 * 4564 2411 * * * 81 30 * 5585 * * * 0 4386 0 1453 S 82 5134 * 4279 4673 5894 * * 3482 4571 2631 * 3310 * 4716 5404 2522 4597 2863 * 4167 82 88 * 4084 * * * 0 4404 0 1671 S 83 2640 * * * * * * * * * * * * 4354 * 1590 2516 2167 * 4034 83 362 * 2173 * * 970 1030 4364 0 2001 W 84 * 4597 * * * 2836 * * * * * * * * 5563 4148 * * 432 * 84 256 3195 4231 549 1659 909 1097 3717 1891 2992 S 85 4577 * * 4711 * 1851 * 4190 * * * 2940 4638 * * 1700 4054 4337 * * 85 0 * * * * 2575 265 4120 0 2081 N 86 * * * 4212 * 3851 * * * 3354 * 850 * * * * * 2989 * 3350 86 172 4813 3703 1000 1000 * 0 4060 1000 2036 R 87 4451 * 3653 * 5111 * 4197 2362 2446 * * * * 4147 2378 4416 4015 4168 * * 87 113 4119 5806 1089 917 716 1354 3963 1333 2438 N 88 * 4921 5300 * * * * * 4626 3583 * 1620 * * * 1513 2817 * * * 88 27 5733 * 0 * 985 1016 4103 1000 1938 L 89 5480 * 5485 4869 6312 * 5715 4456 4563 1900 5158 4589 4924 2032 * * 5021 * 3699 3667 89 35 * 5366 * * 0 * 4286 0 1435 S 90 * * 2501 3202 * 3932 * * 3986 * * 4517 * 3920 4496 3102 1664 * * * 90 99 3909 * 1999 416 0 * 4295 1566 1000 E 91 4173 5527 3103 2753 * * * * 3736 * 4261 * 1581 6193 3754 4550 6176 * * 4255 91 25 5888 * 2585 263 * * 4314 1000 0 I 92 5308 * 2720 5460 3754 5413 * 820 * * * 3643 5307 5015 * * * * * * 92 0 * * * * * * 4314 0 0 W 93 * * * * 3477 * * * 3767 * * * * 4335 * * * * 345 * 93 102 4174 6255 0 * * * 4288 1000 0 D 94 5502 * 2065 3147 * 2670 * * 5416 * * 1975 * 3646 * * 3332 * * 6377 94 0 * * * * 0 * 4318 0 1000 N 95 * * * * * * 4335 * 4588 * * 408 * * 3234 5437 5289 * * * 95 0 * * * * * * 4288 0 0 M 96 * 3778 4522 3796 * * * 4393 * 2723 885 * * 5483 * * 4363 * * * 96 0 * * * * * * 4405 0 0 T 97 * 4363 4513 * * 4213 * * * * * * * * * * 228 * * * 97 0 * * * * * * 4405 0 0 W 98 * * * * * * * * * 3436 * * * * * * * * 218 4393 98 144 3392 * 0 * * * 4405 1432 0 L 99 * 4278 * * * * 5019 4548 4200 3204 2407 * * 1243 * 4148 * * * 4490 99 0 * * * * * * 4350 0 0 Q 100 4148 * * 1515 * * 5435 * 5304 * * 4490 5659 1327 * 4278 5019 * * * 100 0 * * * * * * 4350 0 0 W 101 * * * * * 3380 * 4148 * * * * * * * * * * 239 * 101 0 * * * * * * 4350 0 0 D 102 * * 1887 1127 * * 4257 3370 * * * 4331 * 5282 * 5386 * * * 5415 102 0 * * * * * * 4365 0 0 K 103 * * * 3027 * * * * 1473 5019 5371 * * 4772 1456 * 4035 * * * 103 0 * * * * * * 4280 0 0 E 104 * * 5065 1832 * * 5526 * 2185 2730 * 5054 * 3099 3002 5308 * * * * 104 0 * * * * * * 4280 0 0 I 105 * * * * * * * 984 * 3281 * * * * * * 3453 1736 * * 105 0 * * * * * * 4280 0 0 S 106 3465 * 1983 4485 * 4717 * 3968 4971 * * 3681 * 5419 3865 1699 * * * * 106 0 * * * * * * 4280 0 0 N 107 4218 * * 5090 6271 * * * * * 4971 723 * 4959 5054 4857 3400 * * 3745 107 0 * * * * * * 4280 0 0 Y 108 5471 * 5425 * 4485 * 4158 5584 * 1874 * * * 3968 * 4800 * 5526 6069 1240 108 0 * * * * * * 4280 0 0 T 109 * * 4971 2575 5065 * 5026 * * * 5019 * 6161 4048 * 3816 828 * * * 109 95 * 3968 * * * * 4280 0 0 Q 110 3799 * 2473 * * 1507 * * * * * 3889 * 2656 * 3373 3765 * * * 110 0 * * * * 0 * 4031 0 1000 I 111 * * 5026 3866 * * 3534 3164 6057 4095 * 1640 * 5419 * * 2311 3583 * * 111 0 * * * * * * 4280 0 0 I 112 * * * * * * * 235 * 4959 * * * * * * * 5065 5371 3968 112 0 * * * * * * 4280 0 0 Y 113 * * 4190 4327 5023 * 6198 * * * * * * 4935 * 2192 2376 * * 1297 113 0 * * * * * * 4280 0 0 G 114 4119 * 2700 3443 * 3175 * 4910 2731 4959 * 3301 * 4342 5817 3147 5941 3792 * * 114 0 * * * * * * 4280 0 0 L 115 3571 3968 5284 4555 * * * 5419 * 775 4013 * * 5941 4950 4638 5308 * * * 115 0 * * * * * * 4280 0 0 L 116 * * * * * * * 2100 * 383 * * * * * * * * * * 116 0 * * * * * * 4280 0 0 E 117 5308 * * 1222 * 6373 * * 2657 * * 4726 * 2601 4195 * 4950 3542 * * 117 0 * * * * * * 4280 0 0 E 118 4237 * 2967 1352 * * * 4176 3523 5370 * 3800 * 2895 5378 * * 5027 * * 118 0 * * * * * * 4281 0 0 S 119 789 * * * * * * * * * * * * * 3428 1607 * * * * 119 36 5353 * 2000 415 * * 4281 1000 0 Q 120 4547 * * * * * 3147 * 3336 * * * * 826 4313 * * * * 2932 120 0 * * * * * * 4048 0 0 N 121 3576 * 3208 2817 * * * 2856 * 4128 * 2544 5637 4793 5362 6035 2783 4103 * * 121 0 * * * * * * 4045 0 0 Q 122 5363 * * 4790 * * 5211 * * 5250 * * * 592 4872 3028 3919 * * * 122 0 * * * * * * 4052 0 0 Q 123 * * * 2482 * * 5003 * * * * * * 605 2918 * * * * * 123 0 * * * * * * 3875 0 0 E 124 * * 4130 831 * * * * 4190 4809 * 3378 * 2364 * * * * * * 124 0 * * * * * * 3875 0 0 K 125 * * * 3449 * * * * 1118 * * 3688 * 4130 1954 4779 5763 * * * 125 0 * * * * * * 3923 0 0 N 126 * * * * * * * * * 3465 5516 172 * * * * * * * * 126 0 * * * * * * 3727 0 0 E 127 * * * 1389 * * * * 2682 5475 3457 * * 3172 * * 4128 2467 * * 127 0 * * * * * * 3726 0 0 Q 128 * * * * 3750 * 2340 * 1824 * * 4538 * 2684 3173 * * * * 2877 128 0 * * * * * * 3726 0 0 D 129 3569 * 1453 1241 * * * * 2973 * * * * * * * * * * * 129 0 * * * * * * 3722 0 0 L 130 * * * * * * * * * 75 * * * * * * * 4304 * * 130 0 * * 0 * * * 3651 0 0 //