HHsearch 1.5 NAME c9d3pH_ FAM FILE c9d3pH_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9d3pH_.a3m DATE Sat Aug 16 13:55:37 2025 LENG 92 match states, 92 columns in multiple alignment FILT 56 out of 58 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.3738 -2.3068 SEQ >ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 97508889999999966787636999999999999999999999999999707677678999999999757999999999999999975329 >Consensus rxxsyxxYixkvLKqVhpdxxiSxkamximnSfvnDiferIAxEAsxLaxxxkrxTitxreIqtAvxllLPgeLakxAvxegtkAvxxxxss >c9d3pH_ RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS >UniRef50_Q54BC2(17-103:226) Histone H2B.v1 n=1 Tax=Dictyostelium discoideum RepID=H2BV1_DICDI E=3e-22 s/c=1.22 id=38% cov=96% -----GIYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVTNFNSA >UniRef50_Q7KWR7(2-80:474) Histone H2B.v2 n=1 Tax=Dictyostelium discoideum RepID=H2BV2_DICDI E=2e-11 s/c=0.89 id=26% cov=87% --ESYSPSIQKLCVFLKPESDISNTGISYLNNFLADMSNAIIVESIHSSKSHKHKTILIEDIESALNVVFPSEIADSIINQ----------- >UniRef50_UPI00004F1E5C(106-193:195) PREDICTED: similar to Histone H2B type F-M (H2B.s) (H2B/s) n=2 Tax=Bos taurus RepID=UPI00004F1E5C E=8e-24 s/c=1.26 id=49% cov=97% ---SFATYFPRVLRQIHKGMSLSHDSVNILDSFVKDTFERIAEEAGRLAGDNKRRTITTEDIEAAVRLLLPGKLGKYAVLKATKSLITYRT- >UniRef50_B0DVY0(43-113:114) Predicted protein (Fragment) n=3 Tax=Laccaria bicolor S238N-H82 RepID=B0DVY0_LACBS E=5e-13 s/c=1.06 id=46% cov=77% -EESYSSYIY---KGVHPDTGISKKAMAILKSFVNNIFKHIATEPSSTCHVGLRLSHSVFMLITSINFVLQDQI------------------ >UniRef50_B7XI58(40-128:133) tRNA and rRNA cytosine-C5-methylase n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XI58_ENTBH E=7e-12 s/c=0.80 id=27% cov=96% ----FKSAIKKCLKESVPDgtVTITRNSLAVLCGIAQSILEDASVLSAELAQKVNKKTIGGEEVITAFELMLTGELKKLCVREIKNTLSKMNT- >UniRef50_Q8SRE2(37-122:130) Histone H2B n=1 Tax=Encephalitozoon cuniculi RepID=H2B_ENCCU E=8e-14 s/c=0.91 id=29% cov=92% ----FKSAVKRISREVSPDNNImlTSNSIQVLCGISYDFVDTVADLAGELARKVGKQTVGSDDIISAFEILLKGELRKLAIREVHNALSK---- >UniRef50_Q28GH7(28-92:98) Novel protein n=3 Tax=Xenopus (Silurana) tropicalis RepID=Q28GH7_XENTR E=2e-10 s/c=1.02 id=47% cov=70% -KGRYSSFIYRVLKQ---NQRKSSFASLSKESTGKETCLCIADEAARLSLYNKRKTITCQEIQSAVK------------------------- >UniRef50_A4I7E8(177-268:278) Histone H2B n=9 Tax=Trypanosomatidae RepID=A4I7E8_LEIIN E=1e-25 s/c=1.26 id=47% cov=101% RSQHWDLYIHRALRRFFKRGTLSKAAVRVLSSFIEDMFNRIQTEAVFVAKINKVKTLTAREIQTSARLLLPPELAKHAMSEGTKAVAKYNAS >UniRef50_Q2HW83(21-101:109) Histone H2B; Histone-fold n=1 Tax=Medicago truncatula RepID=Q2HW83_MEDTR E=9e-13 s/c=0.92 id=30% cov=89% ----WQLELTNIRKQVCPDLKLQLGGMKMMDSMVNYFMKKLIAEA---TKHVDSNCLDVREIMAAVYQVFPEQLAKNAHQRGLEAVNQ---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 2437 * * * * * 294 * * * * * 1 0 * * * * * * 2525 0 0 K 2 * * * 3297 * 4343 2614 * 998 * * * * * 4663 2780 * * * * 2 0 * * * * * * 3588 0 0 E 3 * * 2862 1225 * 2678 * 4891 5946 * * 4361 * 4316 3316 * 5100 * * * 3 0 * * * * * * 3854 0 0 S 4 * * 4473 5294 * 4380 3845 * * * * 3584 * * 4182 914 2809 * * * 4 0 * * * * * * 3853 0 0 Y 5 * * * * 1528 * * * * 5522 * * * * * * * * 2965 990 5 26 * 5807 * * * * 4314 0 0 S 6 2611 * 4864 * 5182 3484 * * 2536 * * 3784 * 4401 3502 1787 6090 * * * 6 0 * * * * * 0 4374 0 1000 V 7 5823 * * * * * 6060 2569 * 2483 6633 4289 3998 * 4156 2178 3244 3141 * * 7 0 * * * * * 0 4374 0 1000 Y 8 3178 * * 4401 4194 * * * * 6060 * * * * * 4384 * * * 465 8 0 * * * * * 0 4374 0 1000 V 9 * * * * 3365 * * 904 * 3505 5599 * * * 5633 4866 5501 2449 * * 9 0 * * * * 0 * 4427 0 1000 Y 10 * * * * 4705 * 3857 5764 2621 5910 * 3844 3205 4413 5227 4541 4046 * 5231 1675 10 55 * 4752 * * * * 4427 0 0 K 11 5537 * * * * * * * 976 * * 4481 * 5943 1359 * * * * 5699 11 18 * 6359 * * * 0 4366 0 1000 V 12 4895 4811 * * * 5307 * 2239 * 3017 * * * * * 3953 5713 1039 * * 12 0 * * * * * 0 4370 0 1428 L 13 4692 4433 * * * * * 3314 * 505 6102 * * 5987 4465 4878 * * * * 13 0 * * * * 980 1021 4370 0 1428 K 14 * * * * * * * * 323 * * * * * 3212 5754 5220 4410 * * 14 24 5915 * 2585 263 * 0 4431 1000 1000 Q 15 5486 * 4207 2661 4410 4727 * * 6016 4161 * 6005 * 971 4524 4639 * * * * 15 75 * 4302 * * 0 * 4431 0 1000 V 16 5891 * * * 4921 * * 1844 * 4427 6047 * * * * 4824 * 799 * * 16 0 * * * * * 0 4365 0 1302 H 17 * 4495 5308 4830 4250 * 1033 5401 4427 * * 3116 * * 5150 4879 6021 4038 * 5052 17 0 * * * * * 0 4365 0 1302 P 18 * * * 4651 * * 5052 * 4052 5589 * 5634 540 4989 * 5348 4265 4921 * * 18 0 * * * * 862 1152 4365 0 1302 D 19 5060 * 1053 2863 5032 2833 4574 * * * * 3664 6072 * 4936 6439 * * * * 19 51 4847 * 1000 1000 * 0 4416 1000 1000 T 20 * 5060 * * 5884 4936 * 3884 5205 2141 3883 4909 * 3441 5360 4400 1847 4162 * * 20 22 6072 * 3585 126 * 0 4416 1000 1000 G 21 * * 4400 * * 1235 * 5032 4526 * * 4909 * * 3426 2469 2766 * * * 21 55 4733 * 1000 1000 * 0 4416 1000 1000 I 22 6211 * * * 5597 * * 808 4954 1761 4574 * * * * * * 5290 * * 22 49 4909 * 1000 1000 0 * 4416 1000 1000 S 23 * * * * * * * * * * * * * 3806 * 456 2404 * 6563 * 23 0 * * * * * * 4427 0 0 S 24 5480 6563 * 5118 * 3573 6143 * 2904 3977 * 3980 5971 3894 3773 1486 6029 5110 * 5520 24 0 * * * * * * 4427 0 0 K 25 4943 * 4625 5081 5027 4555 6212 * 1239 * 5606 3890 5578 3127 3431 * 4413 * * 5377 25 0 * * * * * * 4427 0 0 A 26 1066 * * 5664 * 3239 * * * 5118 * * * * * 1964 3286 6799 * * 26 0 * * * * * * 4427 0 0 M 27 * * * * * * * 2555 * 3446 1122 * * 5664 * 4071 4799 2613 * * 27 0 * * * * * * 4427 0 0 G 28 3213 * 3922 4008 * 3430 5081 6682 3564 4101 5271 3706 * 3717 4017 2353 4850 5762 * * 28 0 * * * * * * 4423 0 0 I 29 * * * * 6044 * 5081 1028 * * 4546 6600 * * * 4071 * 1702 * 4471 29 0 * * * * * * 4423 0 0 M 30 * * * * * * 5737 6755 5004 1542 1162 * * * * * 5085 3622 * 4650 30 0 * * * * * * 4423 0 0 N 31 * 3269 2159 5004 * * * 4372 4769 * * 1050 * * * 4515 5073 * * * 31 0 * * * * * * 4423 0 0 S 32 4762 * * * * 3691 * 5378 * * 4628 3796 5087 * * 585 4229 * * * 32 27 * 5743 * * * * 4423 0 0 F 33 * * * * 866 * * 3263 * 2565 3028 * * * * * 4943 * * 5426 33 0 * * * * * 0 4417 0 1000 V 34 3835 * * * * 4940 * 2285 4982 3463 3172 * * * * 4937 * 1230 * * 34 0 * * * * 0 * 4491 0 1000 N 35 3800 * * 5010 * 6206 4510 * 2968 * * 1203 * 4256 3871 4492 * 5204 * 3551 35 0 * * * * * * 4498 0 0 D 36 * * 506 4036 * 5131 5204 * * * * 4152 * * * 4225 * * * 3851 36 0 * * * * * * 4498 0 0 I 37 * * * * 3757 * * 1132 * 3688 2345 5204 * 5689 * * 3325 4351 * * 37 0 * * * * * * 4498 0 0 F 38 * 5012 * * 674 * * * * 3144 3590 * * * * 4400 5109 3843 * * 38 0 * * * * * * 4493 0 0 E 39 * * 3380 1010 * 5082 5212 5109 3362 5012 * 3417 * 4406 * 4761 * * * 5955 39 0 * * * * * * 4493 0 0 R 40 4400 4280 4904 * * * 4807 5212 3477 * * 5228 * 5119 886 4346 3843 * * * 40 0 * * * * * * 4493 0 0 I 41 4904 4761 * * * * * 499 * 2530 * * 5955 * * * * 4930 * * 41 0 * * * * * * 4493 0 0 A 42 496 * * * * 4761 * 3262 * * 5109 * * 4996 * 4904 5955 4643 * * 42 21 * 6130 * * * * 4493 0 0 G 43 3347 5192 2877 2819 * 3687 * * 4539 * 4572 5090 * 4965 4835 3181 2864 3476 * * 43 0 * * * * * 0 4501 0 1000 E 44 * * 5016 288 * * * * 4416 3912 * * * * * * * 4759 * * 44 0 * * * * * 0 4501 0 1000 A 45 292 * * 6151 * * * * * * * * 4691 * * 3172 5682 * * * 45 66 * 4479 * * * 0 4369 0 1000 S 46 1982 5254 * * 4720 2942 * 4271 * * * 5825 * * * 1145 * 5007 * * 46 0 * * * * * 0 4228 0 1578 R 47 * * * 3233 3983 5900 3239 5162 4606 4835 * 3980 * 4074 1533 3099 5747 * * * 47 0 * * * * * 0 4228 0 1578 L 48 * * * * 4740 * * 4266 * 511 4642 * * 5254 * 4271 4605 4330 * * 48 0 * * * * 816 1212 4228 0 1578 A 49 1170 3935 * * * 5397 * * * 4562 4229 * * * * 2529 3354 3327 * * 49 0 * * * * * 0 4369 0 1000 H 50 * 4686 6225 * 5285 6244 2568 * 1719 4248 * * 8258 2615 2484 5715 * * * 5666 50 21 * 6080 * * * 0 4369 0 1000 Y 51 4003 * 6220 * * * 3609 4315 2791 3406 * 4907 * 5033 * 3738 * 4128 * 1485 51 0 * * * * * 0 4373 0 1446 N 52 4109 * * * * 4682 3477 * 3943 * * 1848 * * 5272 2718 3042 2750 * 5469 52 0 * * * * * 0 4373 0 1446 K 53 * * 4451 * * 3329 6717 * 1077 4682 * 3005 * 5469 3115 3842 * * * * 53 0 * * * * * 0 4373 0 1446 R 54 * * * * * * 3138 * 1633 * * 6076 * 5657 1185 4072 * 5053 * * 54 0 * * * * 0 * 4341 0 1446 S 55 * 5360 * * * 5301 * * 2338 3056 6310 4061 6942 3566 2904 2140 3605 5360 * * 55 0 * * * * * * 4334 0 0 T 56 * 4523 * * * 5676 * 6089 * * * * * * * 4739 177 * * * 56 0 * * * * * * 4373 0 0 I 57 * * * * * * 4688 1229 * 1254 5191 * * * 5697 * * 3869 * * 57 0 * * * * * * 4335 0 0 T 58 5191 * 4144 * * 2446 5958 5945 * 4427 * 6124 * 5397 * 2397 1232 * * * 58 0 * * * * * * 4335 0 0 S 59 2347 5129 * * 5827 4897 4881 3832 4549 6006 * * 4489 * * 1419 4806 3224 * * 59 0 * * * * * * 4335 0 0 R 60 * * 3869 3268 4688 3989 5945 * 3829 * * 5191 * 4262 899 * * * 5397 * 60 0 * * * * * * 4335 0 0 E 61 5406 * 1863 721 * * * * * * 4668 * 4779 * * * * 5710 * * 61 0 * * * * * * 4315 0 0 I 62 * * * * * * * 549 * 3134 * * * * * * * 2303 * * 62 0 * * * * * * 4315 0 0 Q 63 * * * 2723 * * * 3232 5177 * 4571 6206 * 683 * * * 4799 * * 63 0 * * * * * * 4268 0 0 T 64 2620 * 6702 5411 * 5213 7379 * * * 4707 * * 4477 * 2164 1211 4918 * * 64 0 * * * * * * 4268 0 0 A 65 298 * * 5638 * 5750 * * * * * * 7379 * * 3021 5718 * * * 65 0 * * * * * * 4268 0 0 V 66 4262 * * * 3268 * * 3685 * 4318 4691 * * * * * 5471 611 * * 66 0 * * * * * * 4214 0 0 R 67 * 5636 5292 3268 * * 3130 * 2764 * * 3520 * * 1203 * * * * 3884 67 0 * * * * * * 4214 0 0 L 68 * * * * 4198 * 5667 3543 5185 531 * * * 4491 5313 * * 4297 * * 68 0 * * * * * * 4179 0 0 L 69 * 4806 * * 5454 * 5667 4149 * 1183 4279 * * * * * 6638 1461 * * 69 0 * * * * * * 4179 0 0 L 70 * * * * 3233 * * 5382 * 296 * * * * * * 4806 5667 * * 70 0 * * * * * * 4179 0 0 P 71 5454 * * * * * * * 3440 * * * 399 4739 * * 4229 4806 * * 71 0 * * * * * * 4179 0 0 G 72 4903 * 3998 4491 * 652 4910 * 5161 * * * 4318 * 5099 3601 * * * * 72 0 * * * * * * 4179 0 0 E 73 * * 2923 620 * 5549 * * 3675 * * * * 3087 * * * * * * 73 0 * * * * * * 4159 0 0 L 74 * * * * * * * 2424 * 363 4798 * * * * * * * * * 74 0 * * * * * * 4110 0 0 A 75 937 4131 * * * 2810 * * 3621 4859 * 5211 * 4600 4757 4132 * * * * 75 0 * * * * * * 4044 0 0 K 76 * * 4306 4859 * * * * 482 * * 5961 * 5539 3143 * 5072 * 5735 * 76 0 * * * * * * 4044 0 0 H 77 * * * * * * 991 * * 2247 * 3549 * * 4649 4306 * * * 3180 77 0 * * * * * * 4044 0 0 A 78 229 4447 * * * * * 3705 * * * * * * * * * 5354 * * 78 0 * * * * * * 4044 0 0 V 79 5735 * 4859 4773 * * 4360 2367 * 4820 3517 * * * 5257 * 5109 1030 * * 79 0 * * * * * * 4044 0 0 S 80 2124 * 5257 * * * * * * 4335 * 3544 * 4360 2711 1403 5072 * * * 80 0 * * * * * * 4044 0 0 E 81 * * 4859 681 4096 * 5109 * 4086 * * * * 3220 3814 * * 5862 * * 81 0 * * * * * * 4044 0 0 G 82 3212 * * * * 339 * 4216 * * * * * * * * * 4385 * * 82 0 * * * * * * 3824 0 0 T 83 * * 3866 * * * 4385 * 4216 3745 5466 4971 * 5080 * 2998 1000 4448 * * 83 0 * * * * * * 3824 0 0 K 84 * * * 3651 * * * * 759 * 4502 2835 * 5382 3859 5080 5466 * * * 84 0 * * * * * * 3824 0 0 A 85 227 * * * * * * * * * * * * * 4448 4441 4216 * * * 85 0 * * * * * * 3824 0 0 V 86 4698 * * * 4411 * * 3922 * 2269 4502 * * * * * * 744 * * 86 30 * 5597 * * * * 3824 0 0 T 87 3950 * * 4910 * * 3820 3548 5061 4671 6215 3690 * * * 1822 1955 4475 * * 87 0 * * * * 0 * 3812 0 1000 K 88 * * * * * 5748 5538 * 1223 * 5382 2578 5373 4221 2428 * 4312 * 5265 * 88 0 * * * * * * 3824 0 0 Y 89 5307 * * * 1455 * * * * * 3540 * * * * * * * * 932 89 0 * * * * * * 3390 0 0 T 90 * * * 4258 * * * 3310 3104 5472 4044 1992 * * 4955 4598 1632 * * * 90 0 * * * * * * 3388 0 0 S 91 3549 * 3963 * 5396 * 4570 * 4739 * * * * * 5040 878 2533 * * * 91 0 * * * * * * 3471 0 0 S 92 2299 * * * * * * * * * * 4452 * * * 413 * * * * 92 0 * * 0 * * * 2952 0 0 //