HHsearch 1.5 NAME c9d3lB_ FAM FILE c9d3lB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9d3lB_.a3m DATE Sat Aug 16 18:35:15 2025 LENG 79 match states, 79 columns in multiple alignment FILT 102 out of 263 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.3820 -1.7545 SEQ >ss_pred CCHHHHCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCC >ss_conf 9235524589999999734831313999999999999999999999999998549960179999999998288788899 >Consensus xdxxxxIxKxxixriaxxxGxxrisxxxxxxlxxxxxxfixxixxxAxxxxxhxkRktixxxDIxxAlxxxgxxxyGfg >c9d3lB_ RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG >UniRef50_B0ENK5(4-78:433) Transcription initiation factor tfiid, putative n=2 Tax=Entamoeba RepID=B0ENK5_ENTDI E=4e-12 s/c=0.97 id=23% cov=95% ----QKIPLDFIKSMLTANGFEEMSDEMINLISEEAENSISELFNEATKFMRHSKRKMLTIQDINSALKlKKLEPYYGY- >UniRef50_B0E6J7(11-85:194) Putative uncharacterized protein n=2 Tax=Entamoeba RepID=B0E6J7_ENTDI E=0.0006 s/c=0.60 id=20% cov=96% ----RKILKIAAAQIAMSAGYTDAKESALETIADVMEMYIQEIGKKTHQISEHNGRTESSFIDLLFAMEQLGIDIFSFG >UniRef50_A2F070(9-78:407) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2F070_TRIVA E=2e-09 s/c=0.91 id=20% cov=87% ----------TVKSIADQLGIKIKNDALAESLAQDAEYRVSKFIQPLVNYFENSADKYLTTDHINHILRVQaIPPIFGF- >UniRef50_C5Z3S0(24-95:196) Putative uncharacterized protein Sb10g002710 n=1 Tax=Sorghum bicolor RepID=C5Z3S0_SORBI E=2e-05 s/c=0.70 id=24% cov=90% ------IPKATITRIMRQVLPQdsRVTSAAKETVDQCIVEFSTVLTQAAMQECRRDHRRTITADDLIAGIARLGFADY--- >UniRef50_D0N275(1-65:166) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N275_PHYIN E=4e-06 s/c=0.81 id=17% cov=73% -------------------GADKFEPRVVAQLQEFVHRYVTEILVDAQEYSMYADKQTIDADDIRLAISSRLNHHY--- >UniRef50_C6SZ53(9-83:161) Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ53_SOYBN E=0.0005 s/c=0.61 id=19% cov=86% RSIVRRVVKDKLSRCSEDGEIS-VSKDALLAFSESGRIFIHYLSATANDICKESKRQIINVEDVFKAL----------- >UniRef50_Q16W94(142-209:217) Histone H3 n=1 Tax=Aedes aegypti RepID=Q16W94_AEDAE E=0.0007 s/c=0.66 id=23% cov=59% ----------------------RITTECLNALQEASEMYLVQVFEDSYRCCLHRNRVTLDVPDMKLAL----------- >UniRef50_C1FDA8(32-101:166) Transcription initiation factor subunit A n=1 Tax=Micromonas sp. RCC299 RepID=C1FDA8_9CHLO E=0.0008 s/c=0.64 id=23% cov=89% -DAVQAIPRHSLRElLLKAAPGEDIEPAVEDFLLDLADDFIDSVTSFACKLAAHRRSDTVEMGDIMVHLKR--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 2015 * * * * * 410 * * * * * 1 0 * * * * * * 3529 0 0 D 2 3771 * 683 3507 * * * * * * * 2946 * * * 3538 * * * * 2 0 * * * * * * 4904 0 0 N 3 2960 * * 4102 * * * 4026 3870 * * 1224 * * 3732 3383 3572 * * * 3 0 * * * * * * 5095 0 0 I 4 * * 4575 2674 * * * 1181 * 3774 4250 * 3963 * * * * 2553 * * 4 0 * * * * * * 5183 0 0 Q 5 5665 * 5047 5542 * 4358 * * 4448 * 3802 3202 * 2403 1836 3180 * * * 3757 5 0 * * * * * * 5938 0 0 G 6 3160 * * * 4851 1539 * * 2331 * * 4617 * * 2806 4688 * 3507 * * 6 0 * * * * * * 6059 0 0 I 7 5244 * * * * * * 519 * 3637 3633 * * * * * * 3121 * * 7 0 * * * * * * 6435 0 0 T 8 5487 * * * * 5180 * 4659 5243 3978 3166 5379 2307 * * 1995 2571 3963 * * 8 68 5431 5470 2807 222 * * 6477 1000 0 K 9 5596 * 6080 * * * * 5506 473 4601 * 4585 * 4124 4095 5430 * * * * 9 0 * * * * * 0 6599 0 1000 P 10 2394 * 2605 3772 * 4865 5483 4206 3452 4083 * 5465 3382 5804 3420 3870 6296 * * * 10 49 4906 * 0 * 0 * 6603 1000 1000 A 11 2188 4838 5061 * 4740 * * 5196 4386 4088 * * 3542 * * 2089 2284 * * 5795 11 0 * * * * * * 6845 0 0 I 12 3708 * * * 5049 * * 1126 * 3115 5362 * * * * * * 1759 * * 12 25 5873 * 1000 1000 * * 6873 1000 0 R 13 3873 * 5775 3872 * 5292 5862 * 2155 * * * 3236 3769 1624 5605 4225 * * * 13 34 * 5414 * * * * 6873 0 0 R 14 6293 * 4551 3382 * 5719 * 6195 3159 6112 6475 6121 6713 3735 1234 3617 5307 4396 * * 14 24 5904 * 0 * * 0 6835 1000 1456 L 15 * 5590 * 5688 3125 * * 1487 * 2059 3815 6700 * * * * 5365 3553 5012 5185 15 65 5031 6242 1244 791 * 0 6850 1709 1456 A 16 749 5586 * * 4974 * * 6165 * 2790 4207 6470 * * * 5532 5720 3512 * * 16 74 * 4327 * * * 0 6831 0 1771 R 17 6241 * 4278 2297 * * 4834 * 2149 4636 5320 4862 * 3797 1982 5050 5940 * * * 17 38 5248 * 2478 285 * 0 6799 1606 2254 R 18 4274 * 5395 3827 * 6163 5269 4354 4036 * * 3935 * 3633 2252 1836 4239 6013 * * 18 41 6218 6093 1000 1000 * 0 6799 1000 2254 G 19 2100 4304 5800 6165 4686 2799 5002 3625 6324 3214 4667 5932 * 6180 * 3996 * 3022 * 6176 19 0 * * * * 1964 427 6790 0 2255 G 20 * * 6142 5421 * 385 * * * 3924 * 5720 4892 * * 5015 5905 5025 * * 20 23 6008 * 1000 1000 * 0 6858 1000 2108 V 21 2887 5115 * * 3803 5259 6368 2131 5406 6025 6074 4568 3976 6283 5949 4067 * 2144 * 5429 21 22 * 6074 * * 2448 292 6908 0 2108 K 22 3622 * 3353 2971 * 4797 6042 6311 2249 * 5932 4696 6301 3981 3839 3663 3162 5171 * * 22 120 4064 5623 1314 742 0 * 6992 2731 2519 R 23 * * 3846 4118 5945 6131 * 4870 2147 * * 3848 4863 6400 1304 4014 * * * * 23 27 5747 * 2585 263 0 * 7292 1073 1000 I 24 4961 * * * 4248 * * 1323 5428 2842 4177 * * * * 5530 * 1858 * * 24 25 5844 * 1000 1000 * * 7225 1503 0 S 25 3237 * 3669 4124 * 5208 * * 5691 * * 3956 6571 4351 5665 963 4189 * * * 25 0 * * * * * * 7224 0 0 G 26 2994 5120 2178 3993 * 3766 6605 * 2251 * * 4248 3624 5910 5605 3593 6134 * * * 26 0 * * * * * * 7224 0 0 L 27 3550 * 1545 1986 * 5215 * * 6371 6438 * 4739 * * 3547 3551 4420 6178 * * 27 0 * * * * * * 7226 0 0 I 28 1408 3598 * * 6463 6688 * 3337 * 4492 6552 * * * * 3778 4986 1938 * * 28 0 * * * * * * 7226 0 0 Y 29 3130 5111 * 4265 6120 * * 4057 2602 2936 4943 * 5825 * 3704 5595 6850 3139 * 2598 29 0 * * * * * * 7226 0 0 E 30 3346 6263 2774 1539 * 6659 * * 4657 5274 6354 4058 4746 4473 4292 4000 4700 5942 * * 30 0 * * * * * * 7254 0 0 E 31 2537 5910 5271 2508 5584 * 6126 4497 5117 2646 4619 6873 * 4386 6241 4407 3200 3945 * 6617 31 0 * * * * * * 7254 0 0 T 32 5117 * * * 3782 * * 2355 * 1171 4099 * * * * 6138 5034 2805 * 6303 32 0 * * * * * * 7254 0 0 R 33 2415 5572 6016 5351 * 6582 5729 6713 5240 3449 5222 3951 * 2929 2671 3166 4905 3836 * * 33 0 * * * * * * 7254 0 0 G 34 6094 * 2341 1812 * 6420 * * 2879 6138 6707 4017 5724 3461 3907 4901 4374 6387 * * 34 0 * * * * * * 7254 0 0 V 35 2748 2748 3061 4135 4879 * 4918 3557 6350 3657 5117 * * 4898 * 3933 6496 3280 * 4642 35 0 * * * * * * 7254 0 0 L 36 2447 3944 * * 5121 4676 * 3299 * 2857 4913 * * * * 3694 3726 2096 6410 6328 36 0 * * * * * * 7258 0 0 K 37 * 5642 3238 1691 6720 5858 6282 5457 3760 5769 * 4535 * 6446 5429 3011 3439 3646 * 4806 37 0 * * * * * * 7259 0 0 V 38 4355 * 3392 2165 4868 * * 4718 4004 4557 4256 5552 * 4269 4035 5555 6623 4391 4631 2739 38 0 * * * * * * 7259 0 0 F 39 5428 * 6629 6499 1214 * 6313 4672 5989 4156 6686 * * * 2248 5768 * * * 2624 39 0 * * * * * * 7263 0 0 L 40 4015 * * * 3611 6905 * 1702 * 2067 5227 * * * * 6089 5045 2196 * 6371 40 0 * * * * * * 7263 0 0 E 41 4413 5317 5029 3006 * 4123 4606 6686 3138 3437 6991 5858 * 4717 2680 3501 3241 4457 * * 41 0 * * * * * * 7263 0 0 N 42 5717 5445 3952 2119 3922 * 5072 4658 3659 5463 4592 3994 * 2793 4499 4402 6199 6089 * 4114 42 0 * * * * * * 7263 0 0 V 43 4376 * * * 5018 * * 1427 * 2275 6218 * * * * * 6141 1667 * * 43 0 * * * * * * 7263 0 0 I 44 2506 5926 * * 4665 4027 * 2965 6236 2643 5140 * * * * 3701 2222 3546 * * 44 0 * * * * * * 7263 0 0 R 45 4038 5599 4928 2606 * 3505 5553 * 3733 4603 * 4734 * 2678 3213 2973 5532 4922 * 6369 45 0 * * * * * * 7263 0 0 D 46 4452 4412 1781 2258 4562 6644 * 6141 3550 6021 * 5801 5507 3681 3585 6854 5491 6975 * * 46 8 7464 * 1585 585 * * 7263 1000 0 A 47 705 4895 * * * 5940 * 5536 * 3378 5569 * * * * 2913 5719 4443 * * 47 0 * * * * * * 7263 0 0 V 48 3738 3423 * 4993 * 6538 5719 3762 3913 4238 4487 3654 * 3872 5352 2721 3793 3394 5842 5361 48 0 * * * * * * 7263 0 0 T 49 3956 * 3661 2871 * * * 3441 2280 3805 4535 5100 * 3821 3919 5883 3748 4334 * * 49 0 * * * * * * 7263 0 0 Y 50 4967 4251 * 6089 2211 * 5323 2845 4890 2798 5569 6489 * * 4744 * * 4086 * 2219 50 20 6199 * 2322 322 * * 7263 1000 0 T 51 1503 2465 * * 5507 * * 6513 6787 6682 2488 * * 6318 * 3376 3326 5181 * * 51 0 * * * * * * 7263 0 0 E 52 5070 * 3996 2551 * * 6313 4855 2587 4694 6320 4303 6199 2931 3125 5642 3444 4314 * * 52 0 * * * * * * 7263 0 0 H 53 4429 6236 6584 4985 * 6100 1032 * 4045 4921 6102 4043 * 5717 4552 3565 * * * 3650 53 0 * * * * * * 7263 0 0 A 54 1826 5259 3671 3336 6499 3603 7146 * 5706 * * 4105 * 5774 3446 2243 6014 * * * 54 16 6534 * 2322 322 * * 7263 1000 0 K 55 4563 * 6320 6534 * 2210 4631 * 1363 6102 * 3226 * 6193 3336 4734 5842 * * * 55 0 * * * * * * 7263 0 0 R 56 6129 * 5507 * * * 6102 * 3147 * * * * * 347 4315 * * * * 56 0 * * * * * * 7263 0 0 K 57 4748 * 4016 5842 * * * * 1044 * * 5916 6318 4233 3485 4049 2953 4740 * * 57 0 * * * * * * 7263 0 0 T 58 5749 * 6612 4640 7234 * 7452 5595 3632 5075 5475 4829 * 4612 4233 * 770 5175 * 5507 58 0 * * * * * * 7263 0 0 V 59 * * * * 5569 6009 * 1449 * 1986 3989 * * * * 5719 * 1927 * * 59 0 * * * * * * 7263 0 0 T 60 4656 * 3233 3517 * * * * 3697 4307 5055 3173 * 5581 4083 3242 1782 * * 5527 60 0 * * * * * * 7263 0 0 A 61 2546 4871 6869 4009 3884 3241 6193 4636 5429 4720 6399 * 3764 * 5272 5145 2410 3215 * * 61 0 * * * * * * 7263 0 0 M 62 5988 5842 2326 2045 6009 6399 * 4642 3819 * 6445 4651 5173 3150 4730 3179 4408 * * * 62 0 * * * * * * 7263 0 0 D 63 * * 208 * * * 3241 * * * * * * * * * 5140 * * * 63 0 * * * * * * 7263 0 0 V 64 * * * * 5774 * * 1209 * 3447 6095 * * * * * * 1176 * * 64 0 * * * * * * 7268 0 0 V 65 5112 6070 3900 4905 4777 * * 2860 3072 2287 5440 2933 * 3793 4780 5629 4508 5005 * * 65 0 * * * * * * 7257 0 0 Y 66 4744 5730 * 4339 3474 6503 4328 * 4356 2116 5827 4187 * 3348 3440 3923 4571 5367 5335 4503 66 0 * * * * * * 7257 0 0 A 67 726 5086 * * * 4724 4273 4830 * 3699 * * * * * 3218 5241 5040 * * 67 0 * * * * * * 7257 0 0 L 68 3929 5723 * * 5184 * * 3160 * 916 2759 * * * * 5085 6284 4158 * * 68 25 5888 * 0 * * * 7260 1449 0 K 69 3998 * 4883 2503 * 5686 6710 * 1940 * 7045 6059 * 2841 2285 4184 7020 * * 7064 69 122 3623 * 0 * * * 7206 2653 0 R 70 4658 * 3940 3970 * 6178 5378 * 3452 3728 6780 4809 * 4617 1425 3641 5594 4131 6517 * 70 52 5490 6258 0 * * * 7205 1490 0 Q 71 5119 * * * 4497 5904 * 5893 5280 1500 4088 3326 * 2899 3417 4059 * 5221 * 4604 71 115 3709 * 0 * * 0 7107 2478 1000 G 72 * 5515 4247 * * 888 * 4180 * 3665 * 2800 * 5606 * * * 3526 * * 72 142 3419 * 894 1115 * 0 6987 2628 1000 R 73 * * 5008 1902 2774 * 5656 3070 4403 3161 4618 3978 5154 4437 4547 * * * * 4798 73 31 5549 * 0 * * 0 6830 1000 1000 T 74 4510 5949 5143 3975 * 4942 4491 * 4432 * 5429 4223 1417 * 3504 3601 3280 * * * 74 0 * * * * * 0 6642 0 1000 L 75 5199 * 3608 4810 * * 4629 2668 * 1749 4956 4800 * 4146 * 4206 5883 3897 * 3366 75 40 * 5192 * * 0 * 6607 0 1000 Y 76 * * * * 2595 * 5460 4111 * * * * 4370 * * * * * * 503 76 0 * * * * 0 * 6418 0 1000 G 77 * * * 4910 * 121 * * * * * * * * * 4398 * * * * 77 0 * * * * * * 5766 0 0 F 78 * * * * 693 * * * * * * * * * * * * * * 1391 78 0 * * * * * * 5339 0 0 G 79 3017 * * * * 190 * * * * * * * * * * * * * * 79 0 * * 0 * * * 3688 0 0 //