HHsearch 1.5 NAME c9d3kH_ FAM FILE c9d3kH_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9d3kH_.a3m DATE Sat Aug 16 15:41:00 2025 LENG 90 match states, 90 columns in multiple alignment FILT 56 out of 58 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.3762 -2.1572 SEQ >ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 916789999999967787636999999999999999999999999999707677678999999999757999999999999999975329 >Consensus esyxxYixkvLKqVhpdxxiSxkamximnSfvxDiferIAxEAsxlaxxxkrxTitxreIqtAvxllLPgeLakxAvxegtkAvxxxxss >c9d3kH_ ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS >UniRef50_A4I7E8(179-268:278) Histone H2B n=9 Tax=Trypanosomatidae RepID=A4I7E8_LEIIN E=1e-17 s/c=1.01 id=47% cov=101% QHWDLYIHRALRRFFKRGTLSKAAVRVLSSFIEDMFNRIQTEAVFVAKINKVKTLTAREIQTSARLLLPPELAKHAMSEGTKAVAKYNAS >UniRef50_B0DVY0(44-112:114) Predicted protein (Fragment) n=3 Tax=Laccaria bicolor S238N-H82 RepID=B0DVY0_LACBS E=8e-09 s/c=0.89 id=47% cov=78% ESYSSYIY---KGVHPDTGISKKAMAILKSFVNNIFKHIATEPSSTCHVGLRLSHSVFMLITSINFVLQDQI------------------ >UniRef50_Q54BC2(17-103:226) Histone H2B.v1 n=1 Tax=Dictyostelium discoideum RepID=H2BV1_DICDI E=4e-19 s/c=1.10 id=38% cov=98% ---GIYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVTNFNSA >UniRef50_Q28GH7(31-92:98) Novel protein n=3 Tax=Xenopus (Silurana) tropicalis RepID=Q28GH7_XENTR E=6e-10 s/c=1.05 id=48% cov=68% --YSSFIYRVLKQ---NQRKSSFASLSKESTGKETCLCIADEAARLSLYNKRKTITCQEIQSAVK------------------------- >UniRef50_UPI00004F1E5C(106-193:195) PREDICTED: similar to Histone H2B type F-M (H2B.s) (H2B/s) n=2 Tax=Bos taurus RepID=UPI00004F1E5C E=1e-23 s/c=1.25 id=49% cov=99% -SFATYFPRVLRQIHKGMSLSHDSVNILDSFVKDTFERIAEEAGRLAGDNKRRTITTEDIEAAVRLLLPGKLGKYAVLKATKSLITYRT- >UniRef50_Q7KWR7(2-80:474) Histone H2B.v2 n=1 Tax=Dictyostelium discoideum RepID=H2BV2_DICDI E=7e-11 s/c=0.86 id=26% cov=89% ESYSPSIQKLCVFLKPESDISNTGISYLNNFLADMSNAIIVESIHSSKSHKHKTILIEDIESALNVVFPSEIADSIINQ----------- >UniRef50_Q8SRE2(37-122:130) Histone H2B n=1 Tax=Encephalitozoon cuniculi RepID=H2B_ENCCU E=5e-14 s/c=0.92 id=29% cov=94% --FKSAVKRISREVSPDNNImlTSNSIQVLCGISYDFVDTVADLAGELARKVGKQTVGSDDIISAFEILLKGELRKLAIREVHNALSK---- >UniRef50_Q2HW83(21-101:109) Histone H2B; Histone-fold n=1 Tax=Medicago truncatula RepID=Q2HW83_MEDTR E=5e-13 s/c=0.93 id=30% cov=91% --WQLELTNIRKQVCPDLKLQLGGMKMMDSMVNYFMKKLIAEA---TKHVDSNCLDVREIMAAVYQVFPEQLAKNAHQRGLEAVNQ---- >UniRef50_B7XI58(40-128:133) tRNA and rRNA cytosine-C5-methylase n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XI58_ENTBH E=4e-12 s/c=0.81 id=27% cov=98% --FKSAIKKCLKESVPDgtVTITRNSLAVLCGIAQSILEDASVLSAELAQKVNKKTIGGEEVITAFELMLTGELKKLCVREIKNTLSKMNT- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * 2011 639 * * * * 5261 * * * * 3580 * * * * * * 1 0 * * * * * * 3377 0 0 S 2 * * 4302 5184 * 4206 3750 * * * * 3432 * * * 865 2723 * * * 2 0 * * * * * * 3700 0 0 Y 3 * * * * 1571 * * * * 5508 * * * * * * * * 2923 972 3 0 * * * * * * 4312 0 0 S 4 2611 * 4864 * 5182 3484 * * 2536 * * 3784 * 4401 3502 1787 6090 * * * 4 0 * * * * * * 4374 0 0 V 5 5823 * * * * * 6060 2569 * 2483 6633 4289 3998 * 4156 2178 3244 3141 * * 5 0 * * * * * * 4374 0 0 Y 6 3178 * * 4401 4194 * * * * 6060 * * * * * 4384 * * * 465 6 0 * * * * * * 4374 0 0 V 7 * * * * 3365 * * 904 * 3505 5599 * * * 5633 4866 5501 2449 * * 7 0 * * * * * * 4427 0 0 Y 8 * * * * 4688 * 3832 5742 2601 * * 3821 3150 4392 5215 4524 3991 * 5210 1661 8 55 * 4747 * * * * 4427 0 0 K 9 5537 * * * * * * * 979 * * 4480 * 5940 1356 * * * * 5696 9 18 * 6356 * * * 0 4363 0 1000 V 10 4894 4809 * * * 5305 * 2238 * 3015 * * * * * 3949 5704 1042 * * 10 0 * * * * * 0 4367 0 1428 L 11 4690 4430 * * * * * 3311 * 506 6102 * * 5986 4463 4876 * * * * 11 0 * * * * 980 1021 4367 0 1428 K 12 * * * * * * * * 323 * * * * * 3210 5745 5215 4407 * * 12 24 5914 * 2585 263 * 0 4428 1000 1000 Q 13 5483 * 4245 2660 4407 4727 * * 6014 4160 * 6002 * 969 4523 4636 * * * * 13 75 * 4301 * * 0 * 4428 0 1000 V 14 5891 * * * 4919 * * 1850 * 4424 6047 * * * * 4823 * 797 * * 14 0 * * * * * 0 4361 0 1302 H 15 * 4494 5306 4829 4248 * 1035 5399 4424 * * 3114 * * 5145 4878 6016 4036 * 5051 15 0 * * * * * 0 4361 0 1302 P 16 * * * 4648 * * 5051 * 4050 5589 * 5631 538 4986 * 5345 4265 4987 * * 16 0 * * * * 862 1152 4361 0 1302 D 17 5060 * 1051 2860 5031 2846 4571 * * * * 3663 6068 * 4934 6436 * * * * 17 51 4846 * 1000 1000 * 0 4413 1000 1000 T 18 * 5060 * * 6014 4934 * 3879 5203 2138 3880 4907 * 3439 5358 4397 1845 4161 * * 18 22 6068 * 3585 126 * 0 4413 1000 1000 G 19 * * 4397 * * 1233 * 5031 4524 * * 4907 * * 3425 2479 2765 * * * 19 55 4732 * 1000 1000 * 0 4413 1000 1000 I 20 6206 * * * 5596 * * 806 4954 1766 4571 * * * * * * 5287 * * 20 49 4907 * 1000 1000 0 * 4413 1000 1000 S 21 * * * * * * * * * * * * * 3804 * 457 2402 * 6562 * 21 0 * * * * * * 4424 0 0 S 22 5476 6562 * 5117 * 3570 6140 * 2918 3975 * 3978 5969 3891 3772 1483 6027 5108 * 5518 22 0 * * * * * * 4424 0 0 K 23 4941 * 4622 5078 5026 4553 6206 * 1237 * 5605 3888 5574 3145 3428 * 4410 * * 5375 23 0 * * * * * * 4424 0 0 A 24 1064 * * 5664 * 3237 * * * 5117 * * * * * 1970 3283 6795 * * 24 0 * * * * * * 4424 0 0 M 25 * * * * * * * 2565 * 3444 1119 * * 5664 * 4071 4798 2611 * * 25 0 * * * * * * 4424 0 0 G 26 3212 * 3920 4006 * 3429 5080 6681 3561 4099 5268 3704 * 3715 4015 2361 4849 5758 * * 26 0 * * * * * * 4420 0 0 I 27 * * * * 6041 * 5080 1031 * * 4544 6597 * * * 4070 * 1700 * 4468 27 0 * * * * * * 4420 0 0 M 28 * * * * * * 5736 6751 5003 1547 1159 * * * * * 5082 3620 * 4648 28 0 * * * * * * 4420 0 0 N 29 * 3268 2166 5003 * * * 4371 4769 * * 1048 * * * 4514 5072 * * * 29 0 * * * * * * 4420 0 0 S 30 4746 * * * * 3678 * 5361 * * 4617 3774 5062 * * 594 4215 * * * 30 27 * 5731 * * * * 4458 0 0 F 31 * * * * 874 * * 3249 * 2549 3025 * * * * * 4926 * * 5464 31 0 * * * * * 0 4451 0 1000 V 32 3819 * * * * 4947 * 2319 4907 3467 3166 * * * * 4925 * 1223 * * 32 0 * * * * 0 * 4444 0 1000 N 33 3825 * * 5030 * 6227 4596 * 2957 * * 1215 * 4219 3817 4440 * 5164 * 3540 33 0 * * * * * * 4455 0 0 D 34 * * 511 4003 * 5158 5164 * * * * 4099 * * * 4187 * * * 3905 34 0 * * * * * * 4455 0 0 I 35 * * * * 3804 * * 1126 * 3678 2355 5164 * 5614 * * 3311 4398 * * 35 0 * * * * * * 4455 0 0 F 36 * 5020 * * 670 * * * * 3147 3618 * * * * 4437 5067 3826 * * 36 0 * * * * * * 4451 0 0 E 37 * * 3403 1012 * 5009 5206 5067 3365 5020 * 3441 * 4367 * 4741 * * * 5971 37 0 * * * * * * 4451 0 0 R 38 4437 4269 4889 * * * 4751 5206 3504 * * 5190 * 5079 895 4304 3826 * * * 38 0 * * * * * * 4451 0 0 I 39 4889 4741 * * * * * 493 * 2564 * * 5971 * * * * 4916 * * 39 0 * * * * * * 4451 0 0 A 40 482 * * * * 4741 * 3374 * * 5067 * * 5014 * 4889 5971 4645 * * 40 21 * 6096 * * * * 4451 0 0 G 41 3373 5249 2910 2793 * 3679 * * 4522 * 4539 5049 * 4969 4792 3166 2870 3493 * * 41 0 * * * * * 0 4459 0 1000 E 42 * * 4984 291 * * * * 4418 3898 * * * * * * * 4738 * * 42 0 * * * * * 0 4459 0 1000 A 43 295 * * 6127 * * * * * * * * 4638 * * 3181 5646 * * * 43 63 * 4553 * * * 0 4328 0 1000 S 44 1984 5213 * * 4679 2961 * 4312 * * * 5856 * * * 1137 * 5036 * * 44 0 * * * * * 0 4200 0 1578 R 45 * * * 3226 4000 5867 3240 5129 4602 4871 * 3956 * 4079 1548 3067 5736 * * * 45 0 * * * * * 0 4200 0 1578 L 46 * * * * 4729 * * 4252 * 517 4576 * * 5213 * 4312 4553 4344 * * 46 0 * * * * 816 1212 4200 0 1578 A 47 1180 3905 * * * 5354 * * * 4509 4203 * * * * 2535 3381 3313 * * 47 0 * * * * * 0 4328 0 1000 H 48 * 4649 6245 * 5240 6224 2591 * 1731 4235 * * 8192 2608 2483 5649 * * * 5599 48 16 * 6496 * * * 0 4328 0 1000 Y 49 3998 * 6203 * * * 3647 4315 2790 3365 * 4880 * 5043 * 3763 * 4089 * 1492 49 0 * * * * * 0 4335 0 1446 N 50 4131 * * * * 4631 3483 * 3936 * * 1838 * * 5229 2721 3056 2773 * 5432 50 0 * * * * * 0 4335 0 1446 K 51 * * 4540 * * 3363 6651 * 1077 4631 * 2993 * 5432 3110 3819 * * * * 51 0 * * * * * 0 4335 0 1446 R 52 * * * * * * 3135 * 1631 * * 6075 * 5657 1184 4100 * 5051 * * 52 0 * * * * 0 * 4338 0 1446 S 53 * 5358 * * * 5298 * * 2336 3054 6304 4060 6933 3564 2903 2146 3603 5359 * * 53 0 * * * * * * 4331 0 0 T 54 * 4602 * * * 5637 * 6086 * * * * * * * 4687 176 * * * 54 0 * * * * * * 4332 0 0 I 55 * * * * * * 4688 1231 * 1251 5191 * * * 5697 * * 3868 * * 55 0 * * * * * * 4332 0 0 T 56 5191 * 4173 * * 2445 5955 5941 * 4424 * 6122 * 5395 * 2396 1230 * * * 56 0 * * * * * * 4332 0 0 S 57 2346 5128 * * 5929 4896 4879 3829 4548 6005 * * 4488 * * 1417 4804 3222 * * 57 0 * * * * * * 4332 0 0 R 58 * * 3868 3266 4688 3985 5941 * 3825 * * 5191 * 4261 901 * * * 5395 * 58 0 * * * * * * 4332 0 0 E 59 5404 * 1862 722 * * * * * * 4667 * 4776 * * * * 5710 * * 59 0 * * * * * * 4313 0 0 I 60 * * * * * * * 550 * 3133 * * * * * * * 2301 * * 60 0 * * * * * * 4313 0 0 Q 61 * * * 2721 * * * 3231 5172 * 4570 6205 * 684 * * * 4798 * * 61 0 * * * * * * 4266 0 0 T 62 2618 * 6702 5409 * 5210 7379 * * * 4705 * * 4476 * 2163 1214 4916 * * 62 0 * * * * * * 4266 0 0 A 63 299 * * 5637 * 5749 * * * * * * 7379 * * 3020 5718 * * * 63 0 * * * * * * 4266 0 0 V 64 4261 * * * 3267 * * 3684 * 4316 4691 * * * * * 5468 611 * * 64 0 * * * * * * 4211 0 0 R 65 * 5635 5290 3267 * * 3142 * 2763 * * 3519 * * 1202 * * * * 3882 65 0 * * * * * * 4211 0 0 L 66 * * * * 4210 * 5646 3523 5179 530 * * * 4505 5396 * * 4290 * * 66 0 * * * * * * 4142 0 0 L 67 * 4778 * * 5424 * 5646 4140 * 1190 4275 * * * * * 6598 1461 * * 67 0 * * * * * * 4142 0 0 L 68 * * * * 3233 * * 5351 * 299 * * * * * * 4778 5646 * * 68 0 * * * * * * 4142 0 0 P 69 5424 * * * * * * * 3420 * * * 407 4705 * * 4209 4778 * * 69 0 * * * * * * 4142 0 0 G 70 4913 * 4010 4505 * 645 4920 * 5144 * * * 4311 * 5165 3616 * * * * 70 0 * * * * * * 4142 0 0 E 71 * * 2920 623 * 5536 * * 3665 * * * * 3084 * * * * * * 71 0 * * * * * * 4120 0 0 L 72 * * * * * * * 2406 * 367 4790 * * * * * * * * * 72 0 * * * * * * 4073 0 0 A 73 947 4138 * * * 2801 * * 3595 4867 * 5205 * 4595 4735 4110 * * * * 73 0 * * * * * * 4002 0 0 K 74 * * 4300 4867 * * * * 485 * * 5987 * 5568 3121 * 5056 * 5745 * 74 0 * * * * * * 4002 0 0 H 75 * * * * * * 996 * * 2226 * 3576 * * 4661 4300 * * * 3177 75 0 * * * * * * 4002 0 0 A 76 233 4419 * * * * * 3691 * * * * * * * * * 5339 * * 76 0 * * * * * * 4002 0 0 V 77 5745 * 4867 4765 * * 4368 2376 * 4794 3509 * * * 5230 * 5093 1031 * * 77 0 * * * * * * 4002 0 0 S 78 2130 * 5230 * * * * * * 4338 * 3560 * 4368 2694 1405 5056 * * * 78 0 * * * * * * 4002 0 0 E 79 * * 4867 679 4117 * 5093 * 4115 * * * * 3213 3811 * * 5856 * * 79 0 * * * * * * 4002 0 0 G 80 3198 * * * * 344 * 4189 * * * * * * * * * 4362 * * 80 0 * * * * * * 3780 0 0 T 81 * * 3857 * * * 4362 * 4189 3751 5459 4955 * 5074 * 2979 1014 4423 * * 81 0 * * * * * * 3780 0 0 K 82 * * * 3650 * * * * 761 * 4513 2814 * 5357 3888 5074 5459 * * * 82 0 * * * * * * 3780 0 0 A 83 231 * * * * * * * * * * * * * 4423 4428 4189 * * * 83 0 * * * * * * 3780 0 0 V 84 4690 * * * 4405 * * 3977 * 2248 4513 * * * * * * 746 * * 84 31 * 5560 * * * * 3780 0 0 T 85 3949 * * 4908 * * 3818 3547 5059 4670 6213 3688 * * * 1821 1953 4509 * * 85 0 * * * * 0 * 3809 0 1000 K 86 * * * * * 5741 5532 * 1228 * 5357 2572 5400 4228 2415 * 4342 * 5249 * 86 0 * * * * * * 3780 0 0 Y 87 5307 * * * 1455 * * * * * 3540 * * * * * * * * 932 87 0 * * * * * * 3390 0 0 T 88 * * * 4258 * * * 3310 3104 5472 4044 1992 * * 4955 4598 1632 * * * 88 0 * * * * * * 3388 0 0 S 89 3535 * 3985 * 5417 * 4553 * 4712 * * * * * 5083 882 2519 * * * 89 0 * * * * * * 3437 0 0 S 90 2275 * * * * * * * * * * 4465 * * * 419 * * * * 90 0 * * 0 * * * 2917 0 0 //