HHsearch 1.5 NAME c9cq5N_ FAM FILE c9cq5N_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9cq5N_.a3m DATE Sat Feb 8 09:21:56 2025 LENG 123 match states, 123 columns in multiple alignment FILT 40 out of 42 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.3780 -1.5351 SEQ >ss_pred CEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEE EEEECCCCCEEEEEEEEECCCCC >ss_conf 9223778881022111168889889999999998539833123246543001467788887788601121372557779899999999999859742299 99852766317999986368889 >Consensus mxvwxpxxxxkfETfSyLPpLtdxqIxkQvxYllxxgWxPclEFxxxxgxxxxexxxxpgyydxrYWtMWKLPmFGctDxxxVlxEixxCxkxxPxxyIR vxgFDnxxQvQxxsFivxrPxsx >c9cq5N_ MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIR IIGFDSNREVQCISFIAYKPAGY >UniRef50_P16881(1141-1268:1273) Ribulose bisphosphate carboxylase small chain P8, chloroplastic n=21 Tax=cellular organisms RepID=RBS_EUGGR E=1e-47 s/c=1.48 id=50% cov=100% MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAApENSFIANDNTvrfsgTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY PQCYVRLAAFDSVKQVQVISFVVQRPSS- >UniRef50_Q7XYK5(68-185:252) Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2 (Fragment) n=6 Tax=Chlorarachniophyceae RepID=Q7XYK5_BIGNA E=8e-44 s/c=1.50 id=50% cov=97% -EVVDPANNLKYETMSYTNVFTEQDIAAQINYMIQNGLIPCVEFD-KGGQIFREHSRMPGYYDGRYWTMWKLPMFGATDAGAVMREIAECKQNNPDSFIR VLGFDNIKQVQCMGFLASRP--- >UniRef50_Q56260(17-114:118) Ribulose bisphosphate carboxylase small chain n=36 Tax=Bacteria RepID=RBS_THIDA E=1e-31 s/c=1.39 id=40% cov=80% ---------RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVR LVGYDNFAQSQGAAMVIYR---- >UniRef50_Q9R2M4(8-98:98) Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=1 Tax=Planktothrix rubescens RepID=Q9R2M4_PLARU E=7e-26 s/c=1.30 id=42% cov=75% ---------RRFETLSYLPPLTDAQIVKQVQYILDQGYIPGVEFSESSEPTQH------------YWTLWKLPLFNATTSQEVLNEVQACRQENSKSYIR VMGFDNVKQCQV----------- >UniRef50_P22860(15-112:113) Ribulose bisphosphate carboxylase small chain 2 n=2 Tax=Allochromatium vinosum RepID=RBS2_CHRVI E=4e-24 s/c=1.14 id=42% cov=80% ----------RYETFSYLPPLNREEILEQILYILDNGWNASLE---------HEHPDRAFEY---YWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVR LVGYDTYAQSKGHSFLAHRP--- >UniRef50_P14960(7-105:139) Ribulose bisphosphate carboxylase small chain n=408 Tax=cellular organisms RepID=RBS_GUITH E=2e-19 s/c=0.98 id=36% cov=80% -------------AFSFLPDLTDEQIVKQIQYAISKNWALNVEWTDDP------------HPRNAYWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVK VNAFDNSRGVEscCLSFIVQRPTS- >UniRef50_A9RL69(1-50:60) Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RL69_PHYPA E=1e-05 s/c=1.01 id=41% cov=41% ----------------------------------------------------------------------KLSMLKCHDSTYVLKEIEKYKKTFFTYYVC ILGFDNVNHVQISRFLAAKP--- >UniRef50_A9THW4(1-41:51) Ribulose bisphosphate carboxylase small chain (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9THW4_PHYPA E=5e-05 s/c=1.19 id=34% cov=33% ----NSIGQTKFNTFYYLLLLSNDAIAEQVEYMIQQKLIPCVKF-------------------------------------------------------- ----------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2147 0 0 Q 2 * * * 3154 * * * * 2499 * 2021 * * 1106 * * * * * * 2 0 * * * * * * 2267 0 0 V 3 * * * * * * * * * * * * * * * * 2575 265 * * 3 0 * * * * * * 2267 0 0 W 4 * * * * * * * * * * * * * * * * * 3154 172 * 4 0 * * * * * * 2267 0 0 P 5 * * 3331 4662 * * * * * * * 1602 1495 2879 * * 4612 * * * 5 0 * * * * * * 2335 0 0 I 6 4983 * * * * * * 2722 * * * * 491 * * 3467 * 6088 * * 6 0 * * * * * * 2335 0 0 L 7 3255 * 6063 3651 2346 * 4108 1834 * 4718 * * * * * * 3930 3448 * 3832 7 0 * * * * * * 2310 0 0 N 8 * * * * * 1092 * * * * * 1141 * * * * 3692 * * * 8 0 * * * * * * 2335 0 0 L 9 * * * * * * * 4770 2982 4009 * 639 * 2916 * * * * * * 9 0 * * * * * * 2310 0 0 K 10 * * * * * * * * 1223 3698 * * 2843 * 1924 * 3448 * * * 10 0 * * * * * * 2488 0 0 K 11 * * * * 3903 * * * 710 * 3508 * * * 2289 * * * * 5093 11 0 * * * * * * 2501 0 0 Y 12 * * * * 528 * * * * * * * * * * * * * * 1705 12 0 * * * * * * 2633 0 0 E 13 * * * 115 * * * * * * * 3709 * * * * * * * * 13 0 * * * * * * 2682 0 0 T 14 2967 * * * * * * * * * * * * * * * 197 * * * 14 0 * * * * * * 2773 0 0 L 15 * * * * 858 * * * * 1530 3292 * * * * * * * * * 15 0 * * * * * * 2947 0 0 S 16 * * * * * 4485 * * * * * * * * * 161 * * * 4040 16 2 * 9463 * * * * 2914 0 0 Y 17 * * * * 1751 * * * * * * * * * * * * * * 508 17 0 * * * * * 0 2947 0 1000 L 18 * * * * * * * * * 93 * * * * * * 4001 * * * 18 0 * * * * * 0 3019 0 1000 P 19 * * * * * * * * * 4043 * 4001 190 * * * * * * * 19 0 * * * * * 0 3019 0 1000 P 20 3727 * 2385 * * * * * * 4043 * * 883 * 5659 * 4380 4001 * * 20 0 * * * * * 0 3019 0 1000 L 21 * * * * 4001 * * * * 349 3067 * * * * * * 4923 * * 21 0 * * * * * 0 3019 0 1000 T 22 * * * * * 4537 * * 5165 * * 3322 * * * 1777 897 * * * 22 0 * * * * * 0 3019 0 1000 T 23 3866 * 958 3278 * 4923 * * * * * 4043 4537 3974 4975 * 3618 * * * 23 0 * * * * * 0 3019 0 1000 D 24 2657 * 2194 1465 * * * * 3718 * * * * 2829 * 5544 * 5473 * * 24 0 * * * * * 0 2986 0 1000 Q 25 3184 * 3114 2344 * * * * 4490 * * * * 1128 * 3727 * * * * 25 0 * * * * * 0 2986 0 1000 L 26 * * * * * * * 511 * 2153 4537 * * * * * * 5032 * * 26 0 * * * * * 0 3019 0 1000 A 27 1429 * * 4938 * * * * 4805 2579 * * * * 3727 3084 4125 3347 * 4511 27 0 * * * * * 0 3019 0 1000 R 28 3060 * 4511 3435 * * * * 728 * * * * * 3320 4647 * * * * 28 0 * * * * * 0 3019 0 1000 Q 29 * * * 2587 * * * * * * * * * 263 * * * * * * 29 33 5476 * 1585 585 * 0 3019 1000 1000 V 30 * * * * * * * 1503 * 3651 5389 * * * * * * 879 * * 30 0 * * * * * 0 2986 0 1000 D 31 3027 * 1964 1539 * * * * 4690 4975 * 3395 * 3168 * * * * * * 31 0 * * * * * 0 3019 0 1000 Y 32 * * * * 4056 * * * * * 5059 * * * * * * * * 136 32 0 * * * * * 0 3019 0 1000 L 33 3057 4846 * * * * * 1915 * 1493 2154 * * * * * * * * * 33 0 * * * * * 0 3243 0 1000 L 34 * * * * * * * 1424 * 1048 3447 * * * * * * 4262 * * 34 0 * * * * * 0 3243 0 1000 N 35 2994 * 3146 * * * * * 3693 * * 2465 * 2930 2177 3059 5020 * * * 35 0 * * * * * 0 3260 0 1000 N 36 * * * * * * * * 2164 * * 1373 * 1956 * 2909 * * * * 36 0 * * * * * 0 3338 0 1000 K 37 * * * * * 595 * * 2385 * * 3059 * * * 5244 * * * * 37 38 5274 * 0 * * 0 3338 1000 1000 W 38 * * * * 4653 5086 * * * 2613 * * * * * * * * 459 4642 38 0 * * * * * 0 3338 0 1000 V 39 2699 * * * * * * 1432 * * * 3423 * * * 3782 2801 2593 * * 39 0 * * * * * 0 3323 0 1000 P 40 5156 * * * * * * 4919 * 5251 5159 * 287 * * * * 3948 * * 40 0 * * * * * 0 3338 0 1000 C 41 4131 716 * * * 2443 * * * 4750 * 4204 * * * 4091 * * * * 41 38 5274 * 0 * * 0 3338 1000 1000 L 42 * * * * * * * 2257 * 1189 * * * * * * * 1505 * * 42 0 * * * * * 0 3338 0 1000 E 43 * * * 76 * * * * 4282 * * * * * * * * * * * 43 197 * 2972 * * * 0 3344 0 1000 F 44 * * * * 291 * * * * * * * * * * * * * 3227 3721 44 339 3497 3048 0 * * 0 3164 1350 1949 E 45 3225 * 1885 1952 * * * * * * * 4756 * * * 3432 2213 5766 * * 45 324 4868 2584 0 * 1166 851 2743 1000 2224 T 46 2987 4895 2085 3691 * * * * 4127 3664 * 4337 5849 * * 2101 3458 * * * 46 211 3390 4622 2073 392 1317 741 3131 1380 2369 D 47 4453 * 1513 2271 * * * * 2027 * * 4856 * * * 3777 4512 * * * 47 174 4837 3669 2807 222 2167 363 3220 1000 2166 H 48 * * * 4456 * 4206 2777 * 4874 4530 4847 4774 1769 3905 4647 4377 * 2667 * * 48 501 * 1769 * * 1668 545 2875 0 2266 G 49 2542 * * 3867 * 607 * * * * * * * * * 3279 * * * * 49 0 * * * * * 0 2433 0 2607 F 50 4127 4459 * 4218 1698 * * * * * * * 3867 3831 * 3086 * * 3223 2542 50 0 * * * * * 0 2433 0 2607 V 51 3408 * * * * * * 2082 * 4660 * * * * * 4195 3867 1153 * 4127 51 0 * * * * 3227 163 2433 0 2607 Y 52 3550 * 4680 * 3490 3436 4337 * * * * 4350 * 3148 3690 3047 4640 4167 5309 2613 52 0 * * * * 3063 184 2476 0 2552 R 53 * * * * * * 2603 * 4295 4360 4482 3098 4305 * 1046 4669 * * * * 53 78 * 4244 * * 2878 211 2584 0 2452 E 54 * * 1870 737 * * * * 4621 * * * * * * 4470 4619 * * * 54 84 4140 * 3000 193 * 0 2572 1000 2417 H 55 * * * 4540 * 4168 1671 * * * * 1417 * * * 3591 3464 * * 4667 55 63 4541 * 2322 322 1577 589 2578 1000 2417 H 56 4929 4957 * * 4810 4959 1932 * * * * 2716 4020 * * 1625 3898 * * * 56 141 4219 4672 1501 629 * 0 2875 1545 2010 N 57 3735 * 3987 * * * 4568 3220 * * * 4037 4546 * 2325 4078 3002 2152 * * 57 53 4796 * 1585 585 2888 209 2869 1000 2054 S 58 3825 * * 2695 * * 4131 * * * 2623 4608 * * 2652 1810 3828 * * * 58 0 * * * * * 0 2860 0 1962 P 59 2494 4350 * * 4947 * * * * * 3973 * 723 * * 3807 * * * * 59 0 * * * * * 0 2860 0 1962 G 60 * 4991 * 2721 3990 784 * * * * * 4350 * 4563 * 4131 * 5347 * * 60 146 3379 * 2322 322 672 1425 2860 1235 1962 Y 61 * * * 4453 5943 * 2092 * * * * 4281 * * 4401 * 4860 * * 810 61 0 * * * * * 0 3120 0 1238 Y 62 4401 * * * * * * * * 4527 * 5943 2387 3612 * 4281 * * * 814 62 120 * 3642 * * * 0 3120 0 1238 D 63 * * 704 * * * * * * * 3272 5617 * * 2260 4222 * * * * 63 0 * * * * * 0 3085 0 1645 G 64 4060 * 4365 * * 1478 * * * * * 1063 * * * * 4212 * * * 64 0 * * * * * 0 3047 0 1645 R 65 4798 * * * * * * * * * * 4571 * * 672 3450 2746 * * 4212 65 0 * * * * 0 * 3047 0 1645 Y 66 * * * * 4186 * * * * * * * * * * * * * * 82 66 0 * * * * * * 3160 0 0 W 67 * * * * * * * * * * * * * * * * * * 0 * 67 0 * * * * * * 3160 0 0 T 68 4691 * 4967 2718 * * * * * * * * 4500 * * 4309 993 3460 * 3482 68 0 * * * * * * 3160 0 0 M 69 * * * * * * * 5815 * 2125 510 * * * * * * * * 4300 69 0 * * * * * * 3139 0 0 W 70 * * * * 3249 * * * * * * * * * * * * * 224 4691 70 0 * * * * * * 3160 0 0 K 71 * * * * * 2497 * * 281 * * * * * * * * * * * 71 0 * * * * * * 3206 0 0 L 72 * * * * * * * * * 127 4532 4600 * * * * * * * * 72 0 * * * * * * 3206 0 0 P 73 * * * * * * * * * * * * 52 * * 4825 * * * * 73 0 * * * * * * 3206 0 0 M 74 * * * * 3045 * * * * 2420 531 * * * * * * * * * 74 0 * * * * * * 3184 0 0 F 75 * * * * 143 * * * * 4825 * * * * * * * * * 4076 75 0 * * * * * * 3206 0 0 G 76 5154 * 2773 * * 401 * * 4825 * * 4915 * * * * * * * * 76 0 * * * * * * 3206 0 0 C 77 3320 955 * 2478 * 5189 * 3292 * 3736 * * * * * * * * * * 77 0 * * * * * * 3206 0 0 T 78 5189 * * * * * 4825 5363 2680 * * 5201 * 2700 4095 3345 1255 * * * 78 0 * * * * * * 3206 0 0 D 79 * * 357 5182 * * * * * * * 4076 * * * 3803 4045 * * * 79 0 * * * * * * 3206 0 0 P 80 1912 * * * * 4337 * 4587 * 4348 * 5987 1578 * * 2338 * 4457 * * 80 0 * * * * * * 3206 0 0 A 81 1990 * 3088 5023 * 3851 * * * * 5320 3045 * 4050 * 2042 3622 * * * 81 0 * * * * * * 3184 0 0 Q 82 2847 * * 3042 * 3728 * * * * * * * 1279 4566 4834 4430 3426 * 4821 82 0 * * * * * * 3184 0 0 V 83 * * * * * * * 2632 * 4772 * * * * * * * 318 * * 83 0 * * * * * * 3184 0 0 L 84 * * * * * * * 3061 * 605 2787 * * * * * * 4338 * 5140 84 0 * * * * * * 3184 0 0 N 85 2833 * * 5286 3918 4566 * * 2923 3728 4430 3593 * 5023 2727 3737 3388 * * 4772 85 0 * * * * * * 3184 0 0 E 86 * * * 0 * * * * * * * * * * * * * * * * 86 0 * * * * * * 3188 0 0 L 87 4583 * * * * * * 853 * 2142 * * * * * * * 2489 * * 87 0 * * * * * * 3188 0 0 E 88 3259 * * 1566 * 4782 4238 * * * * 2895 * 2764 3166 4303 * 5341 * * 88 0 * * * * * * 3188 0 0 E 89 1715 * * 1148 * * * * 4863 * * 3363 * * * 3572 5128 * * * 89 0 * * * * * * 3188 0 0 C 90 2392 409 * * * * * * * * * * * * * * * 5498 * 4863 90 0 * * * * * * 3188 0 0 K 91 5188 * * 5233 * * 2879 4181 2157 * * * * * 1361 * 3258 4764 * * 91 0 * * * * * * 3188 0 0 K 92 * * * * * * * * 835 * * * * 3749 2186 2782 * * * * 92 0 * * * * * * 3188 0 0 E 93 1262 4179 * 2479 * * * * * * * 4606 * 5181 * 3849 2774 3958 * * 93 0 * * * * * * 3188 0 0 Y 94 * 4848 * * 1585 * 4458 * 5020 * * 2474 * * * * * * * 1413 94 0 * * * * * * 3188 0 0 P 95 4848 * * * 4863 * * * * * * * 156 * * 4909 * * * * 95 0 * * * * * * 3188 0 0 N 96 3931 * 1163 4782 * 3877 * * 4041 * * 2199 * 4537 * 5181 4863 * * * 96 0 * * * * * * 3188 0 0 A 97 1589 2547 * * * 3815 2237 * * * * 4583 * * * 2864 * * * 4863 97 0 * * * * * * 3188 0 0 F 98 * * * * 2245 * 2483 * * * * * * * * * * * 4496 822 98 0 * * * * * * 3188 0 0 I 99 * * * * * * 5237 871 * * * * * * * * * 1228 * * 99 0 * * * * * * 3188 0 0 R 100 * 4863 * * * * 6023 * 3896 * * * * * 179 * * * * * 100 0 * * * * * * 3188 0 0 I 101 * 4238 * * * * * 2213 * 1808 3806 * * * * * * 1418 * * 101 0 * * * * * * 3188 0 0 I 102 3035 * * * * * * 2205 * 2680 4909 3295 * * * * 3737 1761 * * 102 0 * * * * * * 3188 0 0 G 103 1424 4336 * * * 791 * * * * * * * * * * * * * * 103 0 * * * * * * 3188 0 0 F 104 * * * * 284 * * * * * * * * * * * * * * 2483 104 0 * * * * * * 3188 0 0 D 105 * * 61 * * * * * * * * 4602 * * * * * * * * 105 0 * * * * * * 3188 0 0 S 106 2279 * * * * * * * * * * 800 * * * 2502 4544 * * * 106 0 * * * * * * 3188 0 0 N 107 * * * * 4583 * * 2472 4251 * 5498 3860 * 4246 * 2940 3358 2205 * 2867 107 106 3815 * 1000 1000 * * 3188 1183 0 R 108 3563 * * * * * 4089 * 1776 * * 4863 * * 1563 4458 2772 * * * 108 0 * * * * * * 3188 0 0 E 109 * * * 3467 * 3796 3685 * * * * * * 462 * * 4887 * * * 109 0 * * * * * * 3188 0 0 V 110 * 3116 * * * 5324 * * * * 5157 * * * * 2001 4235 920 * * 110 0 * * * * * * 3188 0 0 Q 111 * 3815 * 3240 * * * * 4544 * * * * 358 * * * * * * 111 161 3240 * 1000 1000 * * 3188 1446 0 C 112 * 1581 * * * 2483 * 2877 * * * * * * * 5157 2925 2388 * * 112 0 * * * * * * 3188 0 0 I 113 3075 5134 * * * * 4524 2916 * 3863 1766 * * * * 2362 * 3065 * * 113 0 * * * * * * 3154 0 0 S 114 2238 4348 * * * 2505 * * * * * * * * 4804 924 * * * * 114 0 * * * * * * 3154 0 0 F 115 * * * * 189 * * 4684 * * 4567 * * * * * * * * 4583 115 0 * * * * * * 3154 0 0 I 116 * * * * * * * 1237 * 1490 * * * * * * * 2187 * * 116 0 * * * * * * 3154 0 0 A 117 1688 * * * * * * 3883 * * * * * * * * * 685 * * 117 0 * * * * * * 3154 0 0 Y 118 4750 * * * 3071 * 1415 * * * * 3142 * 2736 * 3461 * * * 3124 118 0 * * * * * * 3121 0 0 K 119 * * * * * * * * 1558 * * * * * 599 * * * * * 119 0 * * * * * * 3058 0 0 P 120 * * * * * * * * * * * * 0 * * * * * * * 120 128 3561 * 1585 585 * * 3042 1000 0 A 121 1392 * * 4184 * * * * * * * * 1432 * * 2911 4053 * * * 121 0 * * * * * * 2593 0 0 G 122 * * * * * 1643 * * * * * * * * * 557 * * * * 122 0 * * * * * * 2439 0 0 Y 123 * * * * 547 * * * * * * * * * * * * * * 1663 123 0 * * 0 * * * 1573 0 0 //