HHsearch 1.5 NAME c9bwdM_ FAM FILE c9bwdM_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9bwdM_.a3m DATE Sat Aug 9 10:09:58 2025 LENG 112 match states, 112 columns in multiple alignment FILT 76 out of 78 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4033 -1.5583 SEQ >ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC HHHHHHHCCCCC >ss_conf 9863038999999999999999999965443642577869999999999999823899489999999999999999999971226899998763167853 589987303798 >Consensus xxpxxSxxxxearxrvLxLYRxxlRxxpxxxxxxxlxxxrxxxRxxiRxeFxxnrxvtDxxxIdxLixkGxxelxexxxxxkQrxHvxxyfxxxxxxxxx xFlxxFlxgxxx >c9bwdM_ VKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFMKNAHVTDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRPT DFLSKFYVGHDP >UniRef50_UPI00006CBBFB(46-169:172) hypothetical protein TTHERM_00933070 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBBFB E=4e-07 s/c=0.45 id=23% cov=96% -----SQNMVQASMKTLRFYRKFCRLIPFILRIHNIgtKFTAQQAMINFGNYIRERNHYRDPGLIDHRIQLGYELLYEAEMHFSQHTILMQYLSPYNTPl sdrgysylekvkygNKSKFLQGFYKGNKP >UniRef50_D2VT73(42-144:180) NADH-ubiquinone oxidoreductase n=1 Tax=Naegleria gruberi RepID=D2VT73_NAEGR E=3e-24 s/c=1.09 id=27% cov=93% ---IRSKSLEEANANVLFLYRRMLKILPWMKETYHVPTNLDVMRKTIHKEFKSFQGLSDTELIDALVIRGYIEYNEATMHHKQRGHIIKFFIESDVTNVA PHLQEY------ >UniRef50_C1EGJ0(22-141:144) Predicted protein n=2 Tax=Micromonas RepID=C1EGJ0_9CHLO E=3e-21 s/c=0.85 id=28% cov=97% -APVFSADLTEAKARSRQFFRDVCRQVPWAMREFFLEevTTTAKFRSQLANEWRRHR-TDDHRVIDVMLFKANQELVTVLAHHFQRHHLITKYvapesna inrRSKSGKPQSKFLSAFLDGK-- >UniRef50_A9SE50(34-114:138) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SE50_PHYPA E=4e-05 s/c=0.61 id=24% cov=63% -KNVSSAGLTTSRREALALYREILRTTRLFTWTNEHGVPwRDLLRDSTRLEFEQARYETDPEVIARLLVVGR---------------------------- ------------- >UniRef50_C5PEA9(6-72:84) Complex 1 protein (LYR family) protein n=2 Tax=Coccidioides RepID=C5PEA9_COCP7 E=0.0008 s/c=0.67 id=29% cov=58% -----------LQRQVLALYRQCLREIRKKPVLITKPQgSQANFKRYARQEFQKNRDVnrKDFATIEYLLRRGQKQLE---------------------- --------------- >UniRef50_Q54F42(11-111:124) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 n=1 Tax=Dictyostelium discoideum RepID=NDUA6_DICDI E=5e-15 s/c=0.81 id=27% cov=83% MRPaLVSLTQQQARRRCFKLYRNCIRSIPHLIQHYNLSYNMSEMRNRFRSNFVEFEEVTEKNQLDRLAFIGETELFDAMSLLKTRSHVVNYFD------- ------------- >UniRef50_B5XFA7(11-79:90) LYR motif-containing protein 2 n=4 Tax=Euteleostomi RepID=LYRM2_SALSA E=9e-09 s/c=0.89 id=23% cov=55% ------------RQKVLSLYRNMMRTIRQVPDEGD----RKYLRDWARDEFKRNKNSTNQDAIRMMITQANMHHDEL----------------------- ------------ >UniRef50_C5FZI3(3-94:812) LYR family protein n=1 Tax=Microsporum canis CBS 113480 RepID=C5FZI3_NANOT E=5e-06 s/c=0.57 id=22% cov=70% --------------QARSLFRSLLRQSNQFSAYNF----REYARRRTIDAFREHQHETEERKIQEFMQKGLTNLRmmKTLAnrVFQQRQTVISQFYQLD- ---------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 2843 * 2641 2490 * * * * * * 937 * * 1 0 * * * * * * 2905 0 0 K 2 2278 * * * * * * * 1225 * * * * * 1450 * * * * * 2 0 * * * * * * 3787 0 0 P 3 * * * * * 3906 * * 4319 * * 3480 334 * * * * * * * 3 135 3489 * 0 * * * 4070 1000 0 I 4 4564 * * * * * * 1457 * 3033 * * 3841 * * 5727 3079 1919 * * 4 0 * * * * * * 4501 0 0 F 5 * * * * 2489 * * 3393 4167 2320 * 4109 * * 3796 4026 * 2194 * 4040 5 0 * * * * * * 4680 0 0 S 6 * * * * * * * * * * * * * * * 62 * 4576 * * 6 0 * * * * * * 5159 0 0 R 7 2015 * * * * 3973 * * 2940 2735 * 3868 * 4475 2254 5074 * 4169 * * 7 0 * * * * * * 5204 0 0 D 8 * * 2263 3444 * 4945 * * * 4793 * 1709 * * 3731 2528 3708 * * * 8 0 * * * * * * 5315 0 0 M 9 3485 * * * * * 2760 4648 3976 1986 3892 * 4246 4481 5401 3505 * * 4231 3693 9 0 * * * * * * 5315 0 0 N 10 2414 * 3166 3755 3054 4280 * 4825 * * * 4482 5117 3467 * 4150 2637 4696 * * 10 0 * * * * * * 5441 0 0 E 11 * * 3838 951 * 5169 * 4978 * 4558 * * * 2485 * 3540 5299 5595 * * 11 0 * * * * * * 5516 0 0 A 12 830 * * * * * 5388 4851 * 2641 5252 * * 3715 * 3377 5658 * * * 12 0 * * * * * * 5647 0 0 K 13 * * * * * * 5251 * 2392 5046 * 5044 * 3272 807 4391 * * * * 13 22 * 6047 * * * * 5828 0 0 R 14 2521 * * * 5301 6305 * * 2547 * 4130 * * 2583 1568 5568 6009 5735 * * 14 0 * * * * * 0 5831 0 1000 R 15 4552 * 6046 2845 * * 5898 * 3182 6015 * 5284 * 2591 1231 4532 * * * * 15 11 6994 * 2807 222 * 0 5935 1000 1000 V 16 1978 5301 * * * 4448 * 5513 * * 5375 * 5497 * * 4537 4615 935 * * 16 0 * * * * * 0 5980 0 1000 R 17 5563 * * * 4078 * * 3610 * 658 5416 * * 5986 2773 * * 5750 * * 17 0 * * * * 0 * 6010 0 1000 E 18 2911 * 5614 4752 5358 3369 4775 * 3206 5422 * 4305 * 4751 3212 1787 4852 * * * 18 0 * * * * * * 6016 0 0 L 19 4632 * * * 2874 * * 6141 * 336 * * * * * 5881 * * * * 19 0 * * * * * * 6016 0 0 Y 20 * * * * 3366 * * * * * * * * * * * * * 4332 229 20 0 * * * * * * 6016 0 0 R 21 * * * * 5385 * * * 3744 * * * * * 150 * * * * * 21 0 * * * * * * 6016 0 0 A 22 2547 4973 3064 2659 * * 6923 * 3359 * 6295 3771 * 3159 3230 4027 5105 * * 5760 22 0 * * * * * * 6016 0 0 W 23 4721 3344 * * 3651 * * 1712 * 3486 3846 * * * * * * 3040 2688 4529 23 0 * * * * * * 6016 0 0 Y 24 * 2635 * * 5096 * * 4693 * 1161 3246 * * 5438 * 5841 5760 4778 5000 3447 24 0 * * * * * * 6016 0 0 R 25 * * * * * * * * 2827 * * * * 6048 245 * * * * * 25 0 * * * * * * 6016 0 0 E 26 2471 5385 6513 2316 6034 3783 6057 5358 * 3811 * * * 2973 * 3237 3194 5838 * 5311 26 0 * * * * * * 6016 0 0 V 27 2896 5413 * * 6726 5413 * 2029 * 3321 * * * * 6195 2473 3128 2680 * * 27 23 * 5991 * * * * 6016 0 0 P 28 4812 * * 6227 5721 5832 * 5943 3985 6173 * 4154 1090 6340 2031 5396 * 6120 * * 28 16 6459 * 3700 115 * 0 6009 1000 1000 N 29 6062 * 5840 3791 2905 5076 4061 * 2950 3289 5398 4687 * 3326 3125 6507 4917 * 3250 6117 29 0 * * * * 0 * 6009 0 1000 T 30 4570 * * * 1888 * * 1838 4292 3600 3657 * * * * * 5176 2578 * * 30 0 * * * * * * 6016 0 0 V 31 4125 6371 5005 * * * * 4181 4422 3090 3427 6469 1628 4231 * 4665 5692 3083 5482 * 31 84 * 4141 * * * * 6006 0 0 H 32 4497 * 2176 3670 * * 3941 * 4966 * 4756 5085 * 3784 3156 3581 3917 5848 2832 * 32 153 * 3309 * * * 0 5964 0 2346 L 33 4316 * 4641 3457 * * 3893 2887 3551 2801 4981 3558 4380 * 5941 * 3866 5978 * 3034 33 76 * 4280 * * * 0 5910 0 3134 F 34 5049 * 4006 * 3189 6182 3715 5425 * * * 2063 * * * * 6633 6033 * 1251 34 100 4367 5731 1182 839 * 0 5871 1849 3258 Q 35 4651 * 2647 3026 3796 4237 4583 * 5466 * * 2785 * 4414 4009 3319 5339 * 5264 3584 35 303 * 2402 * * 2330 320 5847 0 3245 L 36 * * * * * 5299 5830 2994 4036 1263 3154 * * 4370 3468 * 4837 3881 * * 36 300 2415 * 686 1401 1398 688 5692 3390 3697 D 37 * * 2436 2548 * 4019 5588 * 4972 5144 * 3159 2508 4641 3823 3696 * * * 5266 37 150 3339 * 1000 1000 3712 114 5868 2205 3278 I 38 5949 * 5879 3512 4459 6311 * 3240 4980 3868 3653 * * 4818 * 2995 3202 2290 * 4021 38 189 3207 6120 1958 429 1904 449 5866 2932 3364 S 39 3709 * 4517 5574 6114 6009 * * * * * 4139 2692 * 5733 2661 1943 4554 3141 5356 39 63 4538 * 602 1552 200 2951 5951 1969 2716 V 40 4145 * * 4826 * * * 5308 3933 3434 5314 * 4140 4264 1307 5046 4678 3088 * * 40 0 * * * * * 0 6006 0 1000 K 41 2838 * 2484 3083 * 4903 * * 2961 6242 * 5936 3809 3783 6543 2778 3805 * * * 41 0 * * * * * 0 6006 0 1000 Q 42 5875 * 4652 2219 6246 * 3981 4840 5374 4666 * 4781 * 2742 * * 5165 2679 * 2445 42 0 * * * * 0 * 6006 0 1000 G 43 2404 4489 * * 3179 6253 * 2906 * 2130 2704 * * * * 6668 5156 3476 * * 43 23 * 5981 * * * * 6006 0 0 R 44 * * * * * * 5613 6342 2775 4321 4451 * * 4908 630 6108 * 4999 * * 44 0 * * * * 0 * 5997 0 1000 D 45 2571 * 3507 3394 * 5518 * 4612 3768 4253 5843 5342 * 4611 2592 3173 3644 * * 5624 45 0 * * * * * * 6006 0 0 K 46 4047 6318 * * 3292 * * 4795 2088 * * 3887 * 5377 2772 3323 4603 4582 3212 5325 46 0 * * * * * * 6006 0 0 V 47 1790 * * * 4271 * * 1698 * 3423 * * * * * * 3413 2612 * * 47 0 * * * * * * 6006 0 0 R 48 4196 * * 5327 * 5202 5410 5496 3048 * * * * 4766 578 5624 * * * * 48 0 * * * * * * 6006 0 0 E 49 3484 * 2602 2146 * 5588 4647 * 3144 6419 * 3857 * 2855 5181 3754 5290 * * * 49 0 * * * * * * 6006 0 0 M 50 3921 * 4310 910 * 6342 5545 * 4282 3986 5171 4662 * 4124 5435 6565 * 5814 * 5202 50 0 * * * * * * 6006 0 0 F 51 * * * 5327 264 * * 3939 * 5938 4756 * * * * * * * 5377 * 51 0 * * * * * * 6006 0 0 M 52 * * 6093 1504 * * 6090 * 3164 4691 5160 * * 4808 1753 * 4403 4684 * 5545 52 0 * * * * * * 6006 0 0 K 53 3350 * * 2453 * * 5545 5017 2249 * * 4722 * 3567 1863 4774 5447 * * * 53 0 * * * * * * 6006 0 0 N 54 3560 * * * 4376 5361 2324 * * * * 1043 * 4482 4476 6663 5327 * * 4916 54 18 6317 * 1000 1000 * * 6006 1000 0 A 55 3484 * * 5344 * 5482 * * 1783 5551 * 5202 * 3861 1266 5180 * 6317 * * 55 35 * 5366 * * * * 6006 0 0 H 56 * * 2419 4462 3595 3728 1852 * * * * 2804 5247 * 6121 3949 5500 * * 4016 56 27 5738 * 0 * 0 * 5951 1000 1000 V 57 4343 5819 * 2452 * * * 3838 4959 3511 * * * 6204 * 6517 4403 1116 * 5198 57 58 4672 * 1000 1000 * * 6012 1429 0 T 58 4509 * 3761 6407 * * * 5678 2516 * * 4065 6284 5247 3142 4749 1228 * * * 58 0 * * * * * * 6012 0 0 D 59 * * 293 3857 * 6390 * * 6275 * * 4378 * 5875 5320 * * * * * 59 30 5610 * 3170 170 * * 6012 1000 0 P 60 4447 * * 3445 4257 5530 5529 6264 4399 2543 * * 1447 4469 * 6326 4819 3741 * * 60 14 * 6663 * * * * 5933 0 0 R 61 4093 * 3041 2958 5679 3637 * 6207 4104 * * 3867 5767 5600 1782 3685 6038 5135 * * 61 0 * * * * 0 * 5958 0 1000 V 62 2403 * * 5251 * * 4873 4154 4040 3399 3878 * * 4133 5586 * 3645 1676 * * 62 0 * * * * * * 5944 0 0 V 63 * * * * * * * 842 5673 3308 5412 * * 4660 * 6068 * 2036 * * 63 0 * * * * * * 5939 0 0 D 64 4989 * 1094 3624 * * * * 5101 * 5603 2936 * 3844 2905 * 5649 6012 * * 64 0 * * * * * * 5939 0 0 L 65 5326 * * 4060 4414 * 3910 4569 5256 3246 2561 * * 4631 2436 * 6353 2811 * 3667 65 0 * * * * * * 5939 0 0 L 66 4382 * * * 6008 * * * * 443 2757 * * * 5010 * * * 5496 * 66 0 * * * * * * 5943 0 0 V 67 5077 * * * * * * 1764 * 1329 4564 * * * * * * 2326 * 4785 67 0 * * * * * * 5943 0 0 I 68 5910 * * 5437 2955 4710 4281 2833 * 3966 3449 4319 * 3401 4119 3759 3378 5375 5200 5496 68 0 * * * * * * 5943 0 0 K 69 * * * 4439 * 5171 5033 5077 1291 5010 5971 5305 * 3593 2610 * 3190 5116 * * 69 0 * * * * * * 5943 0 0 G 70 2685 * * * * 454 * * * * * 5402 * * * 4658 5314 * 5257 * 70 0 * * * * * * 5943 0 0 K 71 * * * 4435 * * 3174 * 3006 4394 4749 3346 * 3080 1877 5972 * * 5292 3273 71 0 * * * * * * 5919 0 0 M 72 4257 * 5028 2167 * * 5773 4236 4247 * 2141 4421 * 2980 3805 * 3342 * * * 72 0 * * * * * * 5870 0 0 E 73 4466 5028 3546 919 * * 4372 * * 4085 * 3886 * 3155 * 5480 * * * * 73 0 * * * * * * 5870 0 0 L 74 * * * * 3509 * 5756 5332 * 708 4050 * * * * * * 5028 6111 2724 74 0 * * * * * * 5870 0 0 E 75 * * 5671 2078 4757 * * 4366 3667 6000 * 5106 * 1695 4054 * 4299 4215 * 4038 75 70 4401 * 4491 66 * * 5842 1726 0 E 76 3985 * 3423 896 * * * * 3750 * * 5507 * 5027 4769 3587 4073 * * * 76 0 * * * * * * 5727 0 0 T 77 2815 5325 * * * * * 3479 * 2136 * * * * * 5707 1550 3013 * 5001 77 0 * * * * * * 5663 0 0 I 78 4341 * * 2681 * * * 2548 * 1871 2761 * * * 4415 * 4636 3111 * * 78 0 * * * * * * 5303 0 0 N 79 2615 * 4962 3323 * * 4341 * 5298 2852 3104 2189 * 5375 * 4459 * * 4667 4415 79 84 4144 * 1000 1000 * * 5303 1000 0 V 80 3466 * * * 2695 * 1769 4286 * 3404 4886 5216 * 3931 * * * 2652 * 5032 80 0 * * * * * * 5303 0 0 W 81 4962 * * * 2385 * 2220 * * 4459 4667 * * * 4507 5031 * * 1313 * 81 0 * * * * * * 5303 0 0 K 82 * * * * 3814 * * * 682 4624 * * * 4058 3857 4455 * * * 3468 82 0 * * * * * * 5288 0 0 Q 83 * * * * * * * * * * * 3450 * 384 * 4226 3493 * * * 83 0 * * * * * * 5288 0 0 R 84 * * 3606 * * * 4455 * 3413 4975 * * 4296 3446 1026 * 3677 4852 * * 84 0 * * * * * * 5288 0 0 T 85 3719 3513 3092 * * 3872 2212 * * * * * 4852 4058 * 3689 2124 4901 * * 85 0 * * * * * * 5288 0 0 H 86 * * * * * * 289 4455 * * * * * 4929 * 4536 4058 * * * 86 0 * * * * * * 5288 0 0 I 87 5353 * * * 4929 * * 2678 * 2127 4031 * * * * * * 1010 * * 87 0 * * * * * * 5288 0 0 M 88 4536 * * * 4624 * * 1832 * 4009 1404 * * * 3652 * * 3107 * * 88 0 * * * * * * 5288 0 0 R 89 * * 3606 * * 3409 4852 * 2741 * * 3371 * 3110 2985 3541 2466 4881 * * 89 54 4761 * 2322 322 * * 5288 1000 0 F 90 * * * * 2663 * * 5275 4801 3891 * * * 2612 4663 * * * 4852 1073 90 75 4296 * 0 * * * 5288 1000 0 F 91 * * * * 528 * * * * 2849 * * * * * * * * 5241 2826 91 339 2520 4830 2516 277 * * 5288 2783 0 H 92 2693 * 3529 3254 * * 3284 4456 3964 5137 * 5137 4866 5269 2949 4357 * 3602 * 3970 92 47 4961 * 1000 1000 * 0 5196 1000 1000 E 93 * * * 1475 * 5497 4424 * 3661 5536 * 3373 3515 3383 * 3106 * 3738 * * 93 0 * * * * * 0 4886 0 1000 T 94 3073 * 5103 3194 * 4733 * 4848 4505 4021 * 4218 * 3528 * 3425 2708 4294 * 2973 94 57 4688 * 0 * 0 * 4886 1000 1000 E 95 * * 2426 2621 * * * * 4160 * * 2130 * 3017 4688 3014 * 4248 * 5146 95 56 4717 * 3170 170 * * 4951 1000 0 A 96 2884 * 2379 4174 4826 3456 4756 4789 4264 5076 4830 * 4649 * 3688 4976 4191 3373 * * 96 131 3529 * 3158 171 * * 4762 1828 0 P 97 2946 * * * * * 4688 * 3411 4521 * 4830 1643 2895 3899 * 4075 3687 * * 97 175 3131 * 3071 183 * * 4762 1768 0 R 98 * * 4750 4789 * 2586 * 4477 2253 * * 2726 3143 3668 3005 * 4723 * * * 98 179 3099 * 1333 729 * * 4762 1968 0 P 99 5487 * * * * 4477 * * 1968 * 5449 * 1009 4435 4264 * * 4075 * * 99 116 3689 * 1801 488 * * 4762 1738 0 T 100 3516 * 4756 * * * * * 2000 * * 4750 * * 4976 1564 2195 * * * 100 0 * * * * * * 4762 0 0 D 101 4264 * 1407 3822 * * * * 3308 * * 3705 2249 * * 3790 4649 * * * 101 33 5487 * 2322 322 * * 4762 1000 0 F 102 * * * * 157 * 4075 * * 4521 * * * * * * * * * * 102 64 4521 * 2807 222 * * 4762 1000 0 L 103 * * * * * * * 4826 * 553 3775 4477 * * * * * 2599 * * 103 0 * * * * * * 4762 0 0 S 104 * * 1708 3583 * 4789 * * 2569 * * * * 2179 * 2434 * * * * 104 0 * * * * * * 4762 0 0 K 105 4435 * 3324 4075 * 2967 * * 984 * * 3051 * * * 4626 * * * * 105 0 * * * * * * 4762 0 0 F 106 * * * * 159 * * * * * * * * * 4477 * * * * 4075 106 0 * * * * * * 4762 0 0 Y 107 * * * * * * * 4873 * 758 * * * * * * * * * 1417 107 0 * * * * * * 4576 0 0 V 108 3465 * 3544 3787 * 4275 5069 4327 2838 * * 4112 * 3817 4686 2251 3678 5361 * * 108 0 * * * * * * 4576 0 0 G 109 4183 * * * * 493 * * * * * 4370 * * * 2425 * * * * 109 0 * * * * * * 4520 0 0 H 110 * * * * * * 3842 * 2237 * * 1449 * * 2005 * * 3282 * * 110 0 * * * * * * 4309 0 0 D 111 * * 1324 2809 * * * * 2566 * * 1791 * * * * * * * * 111 0 * * * * * * 3310 0 0 P 112 * * * * * * * * * * * * 0 * * * * * * * 112 0 * * 0 * * * 1809 0 0 //