HHsearch 1.5 NAME c9bwdG_ FAM FILE c9bwdG_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9bwdG_.a3m DATE Sat Aug 9 10:53:27 2025 LENG 118 match states, 118 columns in multiple alignment FILT 71 out of 73 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.3818 -1.5764 SEQ >ss_pred CCCCCEECCCCHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCC CCHHHHCCCCCCCCCCCC >ss_conf 9422010378733404877999856898553676787514999316686757551211278721003999399899999999869938997687676764 322321065742000359 >Consensus xxxxxxxsGxPxexxxxRxarIyxpakxamQSGxxxtxxWxlefexxxxwxnpLMGWtssxDxxxqvxLxFxtkExAIxyaekxGxxyxVxepxxrxxxx ksYadNFxxxrxxxxxtk >c9bwdG_ KLDITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNLVLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKS KSYGANFSWNKRTRVSTK >UniRef50_UPI00006CA406(78-174:185) hypothetical protein TTHERM_00526930 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CA406 E=5e-28 s/c=1.29 id=30% cov=81% --------------IRGRVARIYIQDTNHMHDtpQIPEGYKWTLEFERQAQYKTPWMGWSFNGDTFSKRNHYFCTLEDAISYCKQMGFGYEVSFPRSRYH TRKSYADNMLW--------- >UniRef50_Q0BTM8(2-95:101) NADH-ubiquinone oxidoreductase 18 kDa subunit-like protein n=2 Tax=Alphaproteobacteria RepID=Q0BTM8_GRABC E=4e-27 s/c=1.30 id=29% cov=80% ------------------RARIYQTPKSAMQSGRARSHVWMLVYtAEQKRTPDALMGWIGGAETQTQVRLRFPTRDAAIAYADANGIDYEIETAHGRKVR PKQYSDNFRFGR------- >UniRef50_A8IS09(28-150:201) NADH:ubiquinone oxidoreductase subunit n=1 Tax=Chlamydomonas reinhardtii RepID=A8IS09_CHLRE E=2e-29 s/c=1.05 id=34% cov=94% --EVSRLSGLPRQEQTPRRVLIFSNSKSPEQQGRQKTAfnrsfpHWSMEYlDPADKWINPLIGWTSSADTKHQaaVNFQFYTAEEAIAFCERQGWEYEIQ VPQIPRdtrsRRYAAYGDNFSIKRH------ >UniRef50_Q1GW38(27-105:180) Putative uncharacterized protein n=1 Tax=Sphingopyxis alaskensis RepID=Q1GW38_SPHAL E=3e-18 s/c=1.17 id=30% cov=60% -------------------AKIYQEPRSTLQGG-HRPQPWYLEFEARRPlGRDVFTGWITNDDPYRHIRVQFPDRDSAIAFAERQGWEYRV--------- ------------------- >UniRef50_A6X7W1(40-118:250) ETC complex I subunit conserved region n=6 Tax=Rhizobiales RepID=A6X7W1_OCHA4 E=5e-24 s/c=1.42 id=34% cov=64% ------------------VARIFKPSRSVTTSGNARTKGWRLVFERRsAPFIEPLMGYTGGSDPLAQVELEFPTLQSAIRYAKRQGLTYVVQRP------ ------------------- >UniRef50_D2VHM0(38-151:156) NADH:ubiquinone oxidoreductase n=1 Tax=Naegleria gruberi RepID=D2VHM0_NAEGR E=6e-29 s/c=1.12 id=36% cov=91% ----SLISGVPKEQM-SRTVRIYKPTKVVTQQGISNTLKWKLEWKKQsvhgEFWHDPLMGWNASNDPLLTTYVFFNSKEDAIDYCKRHGYIYEIEDPeds kNLEDLGGKSYSDKFKYRK------- >UniRef50_A9SEI8(175-286:289) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SEI8_PHYPA E=3e-22 s/c=0.95 id=35% cov=89% -----EISRLPVKSKLQRKVIIYSPSSgTSMQqlQSTSKAAQWRIDYETETKWESSLKGWTSTGDSYLDVDesgLQFDSKEAAITFAEQYGWSYKIYEfq VKEAKHKRNSSLGNFDW--------- >UniRef50_A5CDV1(3-93:93) Putative uncharacterized protein n=2 Tax=Orientia tsutsugamushi RepID=A5CDV1_ORITB E=7e-20 s/c=1.08 id=29% cov=75% -------------------VRIYQLSKLPTQSG-PTSKLWTVDFsceEKKNRFIDTTLGWTGTTNPYASTKIYFKNKLSAIKFCLNNYLNYELITPKRRK LIVKSYTENFK---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 1233 * * * * 800 * * * * * * * * * * * 1 0 * * * * * * 1890 0 0 L 2 * 2304 * * * * * * * 2316 2344 * * * * * * 1323 * * 2 0 * * * * * * 1963 0 0 D 3 * * 1015 1634 * 4193 * * 3767 * * 4186 * * * * * * * * 3 0 * * * * * * 2915 0 0 I 4 3533 * * * * * 3522 1551 * 2601 4094 * * * * * * 1933 * * 4 0 * * * * * * 2996 0 0 T 5 1914 * * * * 2783 * * * * * 4315 3994 * * 1287 3907 * * * 5 0 * * * * * * 3322 0 0 T 6 * * * 3120 3808 * * 2311 * 4204 * * 2891 4407 3102 4619 3752 2791 * * 6 0 * * * * * * 3448 0 0 L 7 * 5000 4629 * * * * 1976 * 2065 3836 * * * * * * 1454 * * 7 0 * * * * * * 3481 0 0 T 8 * * 5057 * * 5174 * * * * * 2988 * * 4288 772 2479 * * * 8 0 * * * * * * 3481 0 0 G 9 * * 6219 * * 151 * * * * * * * * 4142 5092 * * * * 9 0 * * * * * * 3498 0 0 V 10 1853 * * * * * * 4105 * 3324 4660 * * * * 4354 3762 1311 * * 10 82 * 4182 * * * * 3498 0 0 P 11 * * * * * 3408 * * * * * * 143 * * * * * * * 11 41 5144 * 0 * * 0 3428 1000 1000 E 12 3489 * 5644 1594 4417 4638 * * 3679 3492 3672 4218 * * 3895 * 5480 3573 * * 12 19 * 6275 * * * 0 3428 0 1000 E 13 * * 2280 838 * * * * 4125 * * * * 4649 4726 * * * 3810 5141 13 144 * 3394 * * 0 * 3484 0 1634 H 14 * * * 3422 3923 4569 1705 * * 2675 5053 * 4756 3687 * 3066 4983 * * 4658 14 0 * * * * 0 * 3578 0 1501 I 15 4410 * * * 3718 * * 2130 4404 2443 3848 * 4934 3623 * 5327 5351 3018 * 4033 15 164 * 3219 * * * * 3777 0 0 K 16 * * 5539 4038 * * 3498 * 2100 4392 * 3591 * 3170 2539 5247 2915 5426 * * 16 79 * 4222 * * 0 * 3830 0 1901 T 17 2971 * 5001 3384 * 2578 * * 4243 5135 * 3385 4049 3666 * 3965 2338 * * * 17 0 * * * * 0 * 3909 0 1464 R 18 4211 * * * * * * * 2918 * 5332 * 4913 * 404 * * * * * 18 0 * * * * * * 4000 0 0 K 19 * * * * * * * * 1952 5360 * * 6113 * 2511 3947 2423 1858 * * 19 0 * * * * * * 4026 0 0 V 20 975 * * * * * * * * * * * * * * * * 1025 * * 20 0 * * * * * * 4180 0 0 R 21 * * * * * * 5856 3816 3123 5666 4830 4339 * * 674 * 6106 4284 * * 21 0 * * * * * * 4205 0 0 I 22 * * * * * * * 60 * 5358 * * * * * * * 5914 * * 22 0 * * * * * * 4205 0 0 F 23 * * * * 1886 * 5051 * * * * * * * 4830 4873 * * * 667 23 0 * * * * * * 4205 0 0 V 24 5921 5871 * * * * * 3154 2009 5210 * * * 2161 1936 4085 * 4848 * * 24 0 * * * * * * 4205 0 0 P 25 5835 * * 3379 * * * * * 5077 * 5692 615 3263 4521 * 5746 * * 5773 25 0 * * * * * * 4220 0 0 A 26 1406 * 4514 * * * * 6148 * * * * 3475 5932 4918 1898 2669 * * * 26 0 * * * * * * 4220 0 0 R 27 4918 * * * * * * * 990 * * * 5991 * 1391 5455 4514 * * * 27 33 5455 * 0 * * * 4220 1000 0 N 28 4560 5986 6585 5520 * * * * * 5077 * 1524 2968 * * 2212 2702 5711 5990 * 28 0 * * * * * * 4220 0 0 N 29 905 * * * * * 4514 * * * * 4607 3636 5380 * 4549 3513 2772 * * 29 0 * * * * * * 4220 0 0 M 30 6028 5737 * 4920 * 4892 * * * 5250 904 6527 * * 4922 5945 1844 * * * 30 0 * * * * * * 4223 0 0 Q 31 * * * * * * 4517 * * * * * * 316 * 4900 3061 * * * 31 33 5461 * 1000 1000 * * 4223 1000 0 S 32 4728 * 4517 * * 5250 * * * * * * * 3651 * 342 5381 * * * 32 64 4517 * 1000 1000 * * 4223 1000 0 G 33 3772 5572 * * * 379 * * * * * * 4440 4538 * 4389 * * * * 33 124 * 3598 * * * * 4206 0 0 V 34 5774 * 4891 6050 * * 6278 3118 3249 2623 * 4272 5889 5465 2661 6122 2212 4836 5449 * 34 0 * * * * 0 * 4092 0 2323 N 35 1534 * 5036 * * 3186 3320 * 4994 5378 * 3710 3512 4727 * 4034 * 6261 5453 4055 35 21 * 6102 * * * * 4206 0 0 N 36 * * * 4535 * 3251 4518 * 2398 5704 * 2015 * 4657 1881 6438 5098 * * * 36 24 5935 * 2807 222 0 * 4206 1000 1000 T 37 3842 * 6052 4198 6453 3279 * 5984 * 5749 6181 * 4578 5572 5956 3540 1023 4607 * * 37 17 * 6429 * * * * 4206 0 0 K 38 4595 * 4906 * 6138 5263 3686 * 1533 5720 * 2930 5941 3974 3083 4256 5788 * * 4537 38 27 5768 * 2585 263 0 * 4203 1000 1000 K 39 4060 * 5332 3915 4492 4665 3232 * 1917 3986 * 5856 5276 4412 4105 4837 3800 5147 * 4397 39 0 * * * * * * 4206 0 0 W 40 * * * * * * * * * * * * * * * * * * 0 * 40 0 * * * * * * 4206 0 0 K 41 * 5064 * 5385 * * 5723 3714 2623 4603 5843 * * 4413 2067 5777 3234 2364 * 5276 41 0 * * * * * * 4206 0 0 M 42 * * * * 5788 * * 1915 * 939 3172 * * * * * * 3572 * * 42 0 * * * * * * 4206 0 0 E 43 * * 2551 1043 4994 * 5749 6395 3830 * * 6197 * * 3724 4281 6525 4055 * * 43 0 * * * * * * 4206 0 0 F 44 * * * * 572 * * 5723 * 4460 * * 4983 * * * * * 3442 2845 44 211 2878 * 1380 700 * * 4206 2894 0 D 45 4330 6363 1704 1121 * 4768 * * 4742 * 4994 5803 5378 * * 5385 * * * * 45 16 6467 * 0 * * * 4206 1000 0 T 46 4786 * 6413 4402 5378 * * 4700 3867 * * 3632 2435 5788 2573 3845 2816 3180 * * 46 118 3676 * 0 * * * 4206 2148 0 R 47 3317 4256 6363 3655 * 5723 * * 5131 3370 6453 5378 5385 3064 1738 5155 3859 4800 * * 47 200 2953 * 1057 946 * * 4206 2564 0 E 48 2329 * 4759 1725 * * 6500 * 4690 * * 3607 4282 3564 4329 3857 3737 * * * 48 131 3528 * 1237 797 * * 4206 2163 0 R 49 6168 * * * 5750 * * * 2401 * * * 2259 3973 1328 5001 4131 * * 5728 49 92 4022 * 0 * * * 4210 2089 0 W 50 6422 * 5626 6070 3825 3940 4881 * 6129 * 6748 * 5721 * 3794 * 4622 6403 1023 3005 50 62 4572 * 696 1386 * * 4210 1951 0 E 51 6594 * * 1328 * * 4927 2092 4042 * * 4708 4585 5953 4598 * 5002 3767 * 5556 51 57 4693 * 0 * * * 4210 1805 0 N 52 * * 1876 2261 * * * * * * * 1214 * 5798 * 5197 4549 * * * 52 0 * * * * * * 4210 0 0 P 53 5867 * 4264 5661 * * 5555 * * * * 5963 538 * 4889 3346 5182 5302 * * 53 26 5806 * 0 * * * 4262 1000 0 L 54 * * * * 5302 * * 6503 * 213 * * * * * * 4105 * 4540 * 54 0 * * * * * * 4262 0 0 M 55 * * * * * * * 4158 5480 4293 282 * * * * * 4377 * * * 55 0 * * * * * * 4262 0 0 G 56 * * * * * 62 * * 5596 * * 5555 * * * * * * * * 56 0 * * * * * * 4262 0 0 W 57 * * * * * * * * * * * * * * * * * * 187 3038 57 0 * * * * * * 4262 0 0 S 58 2937 6847 * 5748 * * * 4557 * 5606 * 5155 * 3798 * 3409 1041 3728 5411 * 58 0 * * * * * * 4262 0 0 S 59 4137 * * 5489 4540 1718 * * * * * * * * * 916 4508 * * * 59 0 * * * * * * 4262 0 0 T 60 * * 5461 * * 3670 * * * * * 3079 * * * 779 2340 * * * 60 0 * * * * * * 4262 0 0 A 61 2109 * 3409 * 5572 1314 5597 * 3889 * * 5749 * * 4585 3955 4728 * * * 61 0 * * * * * * 4289 0 0 D 62 * * 116 4985 * * * * * * * 4444 * * * * * * * * 62 0 * * * * * * 4289 0 0 P 63 5777 6425 * * 5485 * * * * * 4303 * 1174 * * 4615 1497 * * 4091 63 0 * * * * * * 4289 0 0 L 64 5975 * * * 4526 * * 6354 4439 1288 3263 5385 * 3493 3997 * 6607 5532 * 2631 64 16 6544 * 0 * * * 4289 1000 0 S 65 2889 * * 5971 * 5212 5724 5406 5703 4576 * 5428 * 2041 4618 1617 3812 6126 * * 65 61 4595 * 960 1041 * * 4289 1765 0 N 66 6200 * 5422 4733 * 3285 5320 * 4526 * * 2236 5994 1298 * 3577 4793 * * * 66 50 4885 * 1303 750 * * 4289 1521 0 L 67 5001 * * * * * * 2848 * 2682 4456 * * * 4526 5777 2382 1415 * * 67 108 3794 * 1063 940 * * 4289 2052 0 V 68 5971 * 4914 3184 * * 3904 5099 4228 5833 * 2747 5001 4577 2386 3616 5189 2910 * 5749 68 69 4415 * 1312 743 * * 4289 1822 0 L 69 * * * * 5724 * 4526 3404 * 627 3978 * * * * * 5406 3200 * * 69 0 * * * * * * 4289 0 0 T 70 6613 * 4995 3418 3995 * 4164 5001 2533 5572 * 4112 * 3416 3285 3468 3792 5971 * 3495 70 0 * * * * * * 4289 0 0 F 71 * * * * 0 * * * * * * * * * * * * * * * 71 0 * * * * * * 4289 0 0 S 72 2986 4526 2168 3721 * 5366 6763 * 4062 * * 3905 2137 * 4951 3972 6200 * * 4842 72 0 * * * * * * 4289 0 0 T 73 * * 4135 5911 * * * * * * * 3743 * * * 1281 1184 * * * 73 0 * * * * * * 4289 0 0 K 74 3310 * * 4924 * * * * 1068 2660 * * 6258 * 2364 6351 * 6445 * * 74 0 * * * * * * 4289 0 0 E 75 4309 * 3822 490 * * * * 4395 5181 * * * 4577 * * 4328 * * * 75 0 * * * * * * 4289 0 0 D 76 2142 * 1651 2413 * 5837 * * 5703 4679 * * * 4962 6544 2749 * * * * 76 0 * * * * * * 4289 0 0 A 77 0 * * * * * * * * * * * * * * * * * * * 77 0 * * * * * * 4289 0 0 V 78 * * * 3334 * * * 780 5177 6433 5348 * * 6433 * * 6399 2114 * * 78 0 * * * * * * 4289 0 0 A 79 1543 * 3420 4112 5703 6618 4723 6482 4028 6425 * 5911 * 5335 3092 3282 4780 * * 4149 79 0 * * * * * * 4289 0 0 F 80 * 6654 * * 1145 * 6051 * * * * * * * * * * * * 936 80 0 * * * * * * 4289 0 0 A 81 644 1595 * * * * * * * * * * * * * * * 5111 * * 81 0 * * * * * * 4289 0 0 E 82 * * 4580 1240 * * * 5597 1738 5181 * 5123 * 3729 4016 6766 6433 * * * 82 0 * * * * * * 4289 0 0 K 83 4216 6763 6766 4491 * 6243 * * 1339 * * 4699 * 3906 1534 6225 6530 * * * 83 0 * * * * * * 4289 0 0 N 84 * * * 4030 * * 3023 5428 4943 5971 3870 2237 * 1672 3470 * * * * 4073 84 0 * * * * * * 4289 0 0 G 85 * * 5994 5837 * 310 5817 * 5765 * * 3802 * * 5326 * * * * 5181 85 0 * * * * * * 4289 0 0 W 86 * * * * 3861 * * 2096 * 2347 * * * * * * * 5115 1316 3835 86 0 * * * * * * 4289 0 0 S 87 4117 6092 2341 2390 * 4526 5994 5749 3925 5975 * 2995 3903 4133 6258 4283 3912 * * * 87 0 * * * * * * 4289 0 0 F 88 4456 6351 * * 2444 * 4737 * * 5406 * * * * * * * * 4559 611 88 0 * * * * * * 4289 0 0 D 89 * 6676 4505 1785 4119 * 4768 4564 4828 5017 6684 5393 * 4385 3547 5227 4560 3180 6370 3397 89 0 * * * * * * 4382 0 0 V 90 6109 * * * * * * 2021 * 3543 * * 6023 * * * * 649 * * 90 17 * 6431 * * * * 4272 0 0 E 91 * * 3426 2139 4972 * * 2570 4949 4638 * * * 2149 5783 4483 4254 4617 * 5299 91 21 6092 * 0 * 0 * 4161 1000 1000 E 92 3374 * 4262 1049 4530 5709 * * 5817 * 4847 5862 4504 3566 6577 6062 3998 5688 * * 92 36 5327 * 1000 1000 * * 4429 1000 0 R 93 3680 * 5788 3856 * 5867 * * 5745 5368 * 5498 632 * 6777 5942 4880 4382 * * 93 35 5397 * 2000 415 * * 4256 1000 0 K 94 3598 5863 4539 * * * 3743 4246 1781 * * 2489 3808 3290 4186 * 6108 5826 * * 94 27 5773 * 3700 115 * * 4295 1000 0 V 95 4048 * 5286 2711 * 5405 6062 3442 2490 4169 4959 5556 2858 5232 4933 3637 6178 4262 * * 95 40 5206 * 1000 1000 * * 4295 1000 0 P 96 3442 * 5206 4620 * * * 6127 3490 6068 * 4681 3344 5112 1167 6526 3675 5556 * * 96 0 * * * * * * 4295 0 0 K 97 4750 * 3852 6127 5826 4090 4644 4865 1505 5088 5593 5811 * * 2910 5863 4096 5212 * 3782 97 29 5647 * 2000 415 * * 4295 1000 0 P 98 5112 * * 6011 3415 4872 3497 3655 5746 2979 5082 * 2707 5863 2732 5587 4064 4155 * 5206 98 111 3755 * 1032 969 * * 4295 2174 0 K 99 6352 * * * * 3977 * 4213 1791 5556 * 6068 4722 4955 1511 5473 3849 4950 * * 99 79 4231 * 1000 1000 * * 4295 1413 0 S 100 4794 * 5601 5877 * 4160 6269 4383 3096 4931 * 6060 1427 * 3001 4399 * 3981 * 4751 100 0 * * * * * * 4252 0 0 K 101 3537 * * * * 4699 * 5198 595 5871 5094 4981 * 4909 4386 * * 5219 * * 101 18 6315 * 0 * * * 4243 1000 0 S 102 2826 * 5155 * * 5268 * * 5057 5067 * 4261 * 3146 * 840 * 5561 * * 102 0 * * * * * * 4243 0 0 Y 103 * * * * * * * 5067 * * * * * * * 4981 * * * 92 103 0 * * * * * * 4243 0 0 G 104 1359 * * * * 2056 * * * 4981 * * * 3797 * 2100 4924 * * * 104 0 * * * * * * 4243 0 0 A 105 3591 * 1058 3472 * 4981 4126 5987 * 5777 * 3530 * 6362 5871 3747 4906 * * * 105 0 * * * * * * 4243 0 0 N 106 * * * * * * * * 5398 * * 112 * * 5057 * * 5565 * * 106 0 * * * * * * 4243 0 0 F 107 * * * * 115 * * * * * 4388 * * * * * * * * 5109 107 48 4944 * 1000 1000 * * 4200 1242 0 S 108 2828 * 4665 * 5344 5598 * * 3129 2016 * * * * 2999 1875 * 6027 * * 108 0 * * * * * * 4146 0 0 W 109 5629 * * * 2539 * 4566 5074 5014 * * * * * * * 3925 5168 1335 2219 109 106 3825 * 1000 1000 * * 3857 1466 0 N 110 4949 * 3166 * * 2614 5216 * 3207 * * 1367 * * 3001 5377 5571 * * * 110 0 * * * * * * 3588 0 0 K 111 5344 * * * * * * * 1184 * * * 4325 * 1042 * * * * * 111 0 * * * * * * 3503 0 0 R 112 * * * * * * 3286 * 4188 2416 * * * 3895 766 * * * * * 112 72 4355 * 1000 1000 * * 3038 1000 0 T 113 * * * * * * * * 1674 * * * * * * * 543 * * * 113 0 * * * * * * 2562 0 0 R 114 * * * * * * 2228 4345 * * * * * * 543 * * * * 4300 114 0 * * * * * * 2562 0 0 V 115 * * * * * * * 1417 4131 * * * * * 4194 * 4048 1141 * * 115 0 * * * * * * 2562 0 0 S 116 4194 * * * * 3235 * * 4300 * * * * * 1928 1091 4152 * * * 116 0 * * * * * * 2562 0 0 T 117 * * * * * * * * * * 4194 4152 * * * 4258 257 * * * 117 0 * * * * * * 2562 0 0 K 118 * * * * * * * * 0 * * * * * * * * * * * 118 0 * * 0 * * * 2562 0 0 //