HHsearch 1.5 NAME c9bthH_ FAM FILE c9bthH_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9bthH_.a3m DATE Sat Jun 14 10:25:32 2025 LENG 127 match states, 127 columns in multiple alignment FILT 61 out of 63 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.9 EVD 0.4164 -0.3990 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 9038999999995312568899998767532102115568999998875542444454305465403335422100134333231468787416899999 877999999999999999999998609 >Consensus xxxxxxxxlgxlxaagsxmGaasxxltvqsrltvwGiKxLqaRvlalExylkdQxllxxwGCsxkxichtxvpwnxswxnxsxxxiWxNmTWxqWekxIx nytxxIxxlLeeaqxQQEkNexeLlxL >c9bthH_ VVGLGAVFLGFLGAAGSTMGAASNTLTVQARLGVWGFKQLQARVLAIERYLEVQQLLGMWGCSGKLICCTNVPWNSSWSNKTYNEIWDNMTWMQWDREIG NYTDTIYKLLEVSQFQQEINEKDNLTL >UniRef50_B7FCA6(546-692:884) Env protein n=2 Tax=Simian immunodeficiency virus RepID=B7FCA6_SIVCZ E=5e-36 s/c=1.03 id=45% cov=93% -------ILGFLGLAGSAMGTVSTVLTIQSqhllagilqqqknllelvekqqellRLTIWGVKNLQARLSAIEGFLEDQLKLKQWGCELTQVCHTNVPWN ESWN---ATPNWNNETWQHWYRRTDELQANISVLLVEAHNTEQKNMFELQKL >UniRef50_Q64G66(29-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=2e-09 s/c=0.91 id=45% cov=56% -------------------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKKIS NYTGTIYKLLNES-------------- >UniRef50_Q64G87(29-114:146) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64G87_9HIV1 E=3e-12 s/c=0.85 id=47% cov=46% --------------------------------------------------------------------HSWCPGNSSWEVIKLRmEIWGNMDlGYNGIKK LGNYTQVIYNLIEESQNQQEKNEQDLL-- >UniRef50_Q9DKV4(558-705:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=6e-22 s/c=0.71 id=27% cov=91% -----LAIMAIVAAAGASLGVAnaiqqsytrdavqtlANATAVQQQVleasyamiqhVAKGIRILEARVARMEVMMDRMMLYQEVDCWHYHQYCVTSTRA DIVNYINWTRFKDNCTWQEWEREISAHEGNITILLKESaritQLAQQK-------- >UniRef50_Q3Y649(12-114:142) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q3Y649_9HIV1 E=2e-20 s/c=0.97 id=42% cov=73% -----------------------------------GHKQLQARVLgSWKDTSRDQQLLGIWGCSGKLICTTNVPWNSSWSLNLRVRYGTTCPGCNGIKKL AITHRQYINYLKNRKTSKEKNEQDLLAF >UniRef50_Q64G54(5-108:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=8e-19 s/c=0.91 id=25% cov=83% -------------------GATAYSCNSRSR----GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWVTRLGWSAIEKLI ITQTHYTGCLKNRKTSRNKLKRDLLAL >UniRef50_Q64FP6(34-109:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=5e-07 s/c=0.73 id=45% cov=30% ----------------------------------------------------------------------------------LNEIWNNMTWQPWDKEIS NFHTDIYSLIEDRRTSRKR-------- >UniRef50_Q70IG7(520-672:864) Envelope glycoprotein gp160 n=3 Tax=Primate lentivirus group RepID=Q70IG7_SIVCZ E=3e-35 s/c=0.97 id=43% cov=100% -VSLVLGLIGFLSAAGTVMGAVGTGLAVQSRdllagivqqqqellraveghsallqLSVWGIKNLNARLTAIEKYLKDQALLNEWGCAWKQICHTSVEWS NQSIPglALYQPDFQNMTWQQWETDIAALFGNVSDALKKAQAQQERNVHEVQSL >UniRef50_Q3Y655(28-106:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=8e-15 s/c=1.03 id=40% cov=63% ---------------------------------------------ALERYLKDQQLLGIWGCSGNSSAPLLCLGTLVGVINLSMIFGRTCLGCSGIEKLS NYTNTIYKLLEDSQIQQDNNEKNF--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * * * * * * * * * * * 0 * * 1 0 * * * * * * 1000 0 0 V 2 * * * * * * * 2040 * * * * * * * * * 402 * * 2 0 * * * * * * 1975 0 0 G 3 * * * * * 303 * * * * * * * * * 2399 * * * * 3 0 * * * * * * 2071 0 0 L 4 * * * * * * * 1770 * 591 4552 * * * * * * * * * 4 0 * * * * * * 2151 0 0 G 5 2303 * * * * 498 * * * * * * * * * * * 3483 * * 5 0 * * * * * * 2151 0 0 A 6 1488 * * * 4096 * * 4212 * 1214 3321 * * * * * * * * * 6 0 * * * * * * 2489 0 0 V 7 2636 * * * 4353 2058 * * * 1800 * * * * * * 4212 2260 * * 7 0 * * * * * * 2489 0 0 F 8 * * * * 772 * * 1859 * 3158 * * * * * * * 5215 * * 8 0 * * * * * * 2719 0 0 L 9 * * * * * * * 3646 * 408 2928 * * * * * * 4826 * * 9 0 * * * * * * 2719 0 0 G 10 1984 * * * * 420 * * * * * * * * * * * * * * 10 0 * * * * * * 2719 0 0 F 11 * * * * 668 * * 2928 * 2620 * * * * * * * 3708 * * 11 0 * * * * * * 2719 0 0 L 12 * * * * * * * * * 203 * * * * * * * 2928 * * 12 0 * * * * * * 2719 0 0 G 13 2164 * * * * 1657 * * * * * * * * * 1121 * * * * 13 0 * * * * * * 2719 0 0 A 14 508 * * * * 3537 * * * 4107 * * * * * * 2712 * * * 14 0 * * * * * * 2719 0 0 A 15 0 * * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 2748 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 2748 0 0 S 17 2111 * * * * 4997 * * * * * * * * * 763 2759 * * * 17 0 * * * * * * 2793 0 0 T 18 1217 * * * * * * * * * * * * * * 3002 1335 4362 * * 18 0 * * * * * * 2793 0 0 M 19 * * * * * * * * * 3081 181 * * * * * * * * * 19 0 * * * * * * 2861 0 0 G 20 * * * * * 39 * * * * * * * * * 5230 * * * * 20 0 * * * * * * 3233 0 0 A 21 647 * * * * * * * * 4754 * * * * * 2991 3429 3240 * * 21 0 * * * * * * 3233 0 0 A 22 736 * * * * * * * * * * * * * 4536 * 3127 2047 * * 22 161 3240 * 3907 100 * * 3233 1000 0 S 23 1277 * * * * 4517 * * * * * * * * * 879 * * * * 23 0 * * * * * * 3233 0 0 N 24 * * * * * * * 3470 * 4677 5571 2896 * * * * 1435 2114 * 3127 24 0 * * * * * * 3233 0 0 T 25 1043 * * * * 4517 * 3859 * * * * * * * 3127 2143 4034 * * 25 0 * * * * * * 3233 0 0 L 26 * 3127 * * * * * * * 359 * * * * * * 3240 * * * 26 0 * * * * * * 3233 0 0 T 27 2500 * * * * * * * * * * 3127 * * * 4360 599 * * * 27 0 * * * * * * 3233 0 0 V 28 3095 * * * * 5738 * 3036 * 4888 * * * * * 3127 * 751 * * 28 0 * * * * * * 3233 0 0 Q 29 * * * * * * * * * * * * * 229 2770 * * * * * 29 0 * * * * * * 3233 0 0 A 30 1637 * * * * * * * * * * * * 3240 * 1036 3557 * * * 30 554 1649 * 4656 58 * * 3233 2332 0 R 31 * * * * * * * * 3414 * * * * 1976 617 * * * * * 31 967 1364 3321 4644 59 * * 3429 2180 0 L 32 * * * * * * * * * 169 * * * * * * * 3177 * * 32 169 3177 * 3322 152 * 0 3160 1000 1000 G 33 * * * * * 5247 * * * * * * * * * 2048 687 3177 * * 33 0 * * * * * 0 3160 0 1000 V 34 2845 * * * * * * 2061 * * * * * * * * * 687 * * 34 0 * * * * * 0 3141 0 1000 W 35 * * * * * * * * 3177 * * * * * * * * * 187 6536 35 0 * * * * 0 * 3160 0 1000 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 3579 0 0 F 37 5775 * * * 5924 * 3936 703 * * * * * * * * 4267 2097 * * 37 0 * * * * * * 3579 0 0 K 38 * * * * * * * * 330 * * * * * 2290 * * * * * 38 0 * * * * * * 3579 0 0 Q 39 * * * * * * * 2818 * * * 1705 * 1030 * * 4018 * * * 39 0 * * * * * * 3579 0 0 L 40 4019 * * * * * * * * 92 * * * * * * * * * * 40 0 * * * * * * 3580 0 0 Q 41 * * * 2826 * * 3947 * * * * 3343 4019 817 3917 * * * * * 41 0 * * * * * * 3580 0 0 A 42 426 * * * * 4019 * * * * * * * * * * 2776 4377 * * 42 0 * * * * * * 3580 0 0 R 43 * * * * * * * * 3662 * * * * * 119 * * * * * 43 0 * * * * * * 3580 0 0 V 44 * * * * * * * 5575 * 2019 4800 * * * * 4025 * 655 * * 44 0 * * * * * * 3633 0 0 L 45 2440 * * * * * * * * 907 * * * 5319 * 4606 2210 * * * 45 37 5293 * 0 * * * 3633 1000 0 A 46 608 * * * * 3213 * * * * * * * * 2878 4459 4192 * * * 46 0 * * * * * * 3658 0 0 I 47 * 4111 * * * 6690 * 2072 * 1435 3737 * * * * * * 2375 5385 4918 47 0 * * * * * * 3887 0 0 E 48 * * * 310 * 3316 * * 4064 * * * * * 4918 * * * * * 48 0 * * * * * * 3887 0 0 R 49 4016 * 5385 5958 * 3508 * * 1477 * * 5576 * * 1891 5778 3891 3737 * * 49 14 * 6690 * * * * 3887 0 0 Y 50 * * * * 4767 * * 2980 * 3241 3729 * * * * * 3983 * * 756 50 0 * * * * * 0 3874 0 1000 L 51 * * * * * * * 3634 * 775 3647 * 3241 * * 5275 * 3609 * 4579 51 0 * * * * * 0 4158 0 1000 E 52 5535 * 2786 2911 * 4579 * * 1149 * * * * 3580 3010 * * * * * 52 0 * * * * * 0 4158 0 1000 V 53 * * 846 4521 * 3241 6382 4579 * * * 3586 * * 2786 * * 6365 * * 53 0 * * * * * 0 4158 0 1000 Q 54 * * * * * * * * * * 2786 4579 * 499 * 3241 * * * * 54 0 * * * * * 0 4158 0 1000 Q 55 2222 * * 6418 * * * * * 5570 2786 * 4660 1471 * 3640 3241 5527 * * 55 0 * * * * * 0 4158 0 1000 L 56 3241 * * * 6700 * * 4125 3399 914 * * * 4768 4109 4579 * 3941 * * 56 0 * * * * * 0 4158 0 1000 L 57 * * * * * * * * * 550 5352 * 3241 * * 4579 * * * 2786 57 0 * * * * * 0 4158 0 1000 G 58 4050 * * * * 2003 3941 * 4096 * * 2588 * 3647 2594 3148 * 4579 * * 58 0 * * * * * 0 4158 0 1000 M 59 6467 * 3393 2491 4579 * * 2198 * 2924 5653 3397 * 3654 * 3208 5535 * * * 59 0 * * * * * 0 4158 0 1000 W 60 * * * * 5535 4579 * 4521 * 2115 * * * * * 4660 * 3647 902 7013 60 0 * * * * * 0 4158 0 1000 G 61 * * 2979 * * 196 * * * * * * * * * * * * * * 61 0 * * * * * 0 4268 0 1000 C 62 * 249 * * 5883 * * * * 2818 * * * * * * * * * * 62 0 * * * * * 0 4268 0 1000 S 63 2060 * * 4221 * * * * 4715 2818 * * * 5722 * 1392 * * 2979 * 63 0 * * * * * 0 4268 0 1000 G 64 * 4240 5916 * 3380 1559 2974 * * 4689 * 3786 * * * * * * 1963 * 64 0 * * * * * 0 4267 0 1000 K 65 5371 * * * * * * * 734 * 4227 4712 * * 3220 6704 4689 * * 2974 65 82 4185 * 0 * * 0 4267 1533 1000 L 66 5965 * * * * * 2866 6262 * 2174 * * * 1467 * 4033 2533 5916 * * 66 0 * * * * * 0 4267 0 1000 I 67 * * * * * * 2343 1392 * 4979 * * * 3841 * 3608 * 2069 * * 67 0 * * * * * 0 4266 0 1000 C 68 3947 652 * * * * 4979 * * 2841 * * * * * * * * * 2974 68 0 * * * * * 0 4266 0 1000 C 69 * 2882 * * * * 1061 * * * * * 3763 * 4770 * 2315 * * 3761 69 0 * * * * * 0 4408 0 1000 T 70 * 4601 * * * * 2932 * * 3721 * * * * * 4260 764 3172 * * 70 0 * * * * * 0 4507 0 1000 N 71 4140 2538 6697 * * * * 4953 * 4351 5218 2662 * * 5903 2815 1731 * 4829 * 71 0 * * * * * 0 4507 0 1000 V 72 4601 2047 * * * * * * * * * * * * * 3172 * 723 * * 72 36 * 5346 * * * 0 4507 0 1000 P 73 3857 * * 4163 * * * * 4690 3451 * * 870 * * * 2338 * * * 73 43 5576 6899 0 * * 0 4478 1000 1332 W 74 * * * * * 2513 * * * 3979 * * * * 2986 * * 4704 745 * 74 49 * 4899 * * * 0 4484 0 1692 N 75 4017 * * 4008 * 3967 * 5450 5957 * * 1155 * 4931 * 3483 2309 * * * 75 13 * 6772 * * * 0 4493 0 1792 S 76 5240 * 3203 3390 5920 * * 5294 4327 2366 * 3615 * 5290 5504 2397 4716 3940 * 4021 76 90 * 4045 * * 2304 326 4504 0 1806 S 77 3624 * * 5099 * * * 3965 * * * * * 4664 * 1638 2591 2087 * 3974 77 0 * * * * 2072 392 4509 0 1972 W 78 4169 5332 * * * 2272 * * * * * * * 5527 * 4706 * 3975 764 * 78 84 4142 * 0 * 1400 687 4489 1630 1862 S 79 4691 * * 4957 * 2854 * 3635 * * * 2494 5969 * * 1624 4331 2809 * * 79 189 * 3022 * * * 0 4456 0 1826 N 80 * * * 4070 * 4387 * 3663 * 3448 * 916 4612 * * 5718 * 4882 * 3349 80 87 4096 * 2125 376 2505 280 4262 1374 2514 K 81 4607 * 4329 4655 5320 * 4414 3064 2231 * * 2666 * 4332 3084 4683 4315 4301 * * 81 118 * 3670 * * 1386 695 4297 0 2360 T 82 * * 5366 * * * * * 4906 2357 * 2787 * * * 1362 2605 * * 4350 82 62 * 4573 * * 1496 632 4243 0 2296 Y 83 5405 * * 4044 6282 * * 4336 3929 2336 5144 4324 * 2398 3779 4636 5794 * 3625 3189 83 44 5051 * 1000 1000 781 1259 4536 1000 2177 N 84 * * 2494 3334 * 4021 * * 4139 * 3918 4292 * 3566 4803 6357 1669 4611 * * 84 83 4158 * 2149 369 338 2260 4564 1596 1643 E 85 4377 4790 2908 2958 * * * 4690 3904 * * * 1673 6429 3058 5662 4823 * * 4384 85 30 5609 * 0 * * 0 4508 1000 1000 I 86 5260 * 2812 5595 2761 5511 * 1134 * * * 3646 4380 5465 * * * * * 4823 86 0 * * * * 0 * 4508 0 1000 W 87 * * * * 4782 3165 * * 3741 * * * * 4552 * * * * 445 * 87 17 * 6457 * * * * 4706 0 0 D 88 5569 * 2100 3436 * 3213 * 5376 5591 * * 2144 * 3389 4733 * 3587 4375 * 6664 88 0 * * * * 0 * 4500 0 1000 N 89 * * * * * * 4228 * 3934 * * 487 * * * 5429 2792 * * * 89 0 * * * * * * 4706 0 0 M 90 * 2794 4514 3835 * * * 4571 * 3500 990 * * 5530 3727 * 6505 * * * 90 0 * * * * * * 4766 0 0 T 91 * * 4831 * * * * * * 3562 * * 3925 * * * 296 * * * 91 52 4831 * 0 * * * 4766 1000 0 W 92 * * * * * 2429 * * * * * * * * * * * * 373 4571 92 0 * * * * * * 4766 0 0 M 93 * 3205 * * * * 5401 4781 3691 3400 2414 * * 1373 * * * * 4279 4873 93 0 * * * * * * 4615 0 0 Q 94 * * * 1605 * * 5536 * 5260 * * 3728 5806 1366 * 3075 5401 * * * 94 0 * * * * * * 4615 0 0 W 95 4279 * * * * 2810 * * * * * * * * * * * * 311 * 95 0 * * * * * * 4615 0 0 D 96 * * 1948 1482 * * 3666 2367 * * * 4623 * 5260 * 5515 * * * 5538 96 0 * * * * * * 4614 0 0 R 97 * * * 2266 * * * * 1704 5174 5731 * * 5001 1533 * 4013 * * * 97 0 * * * * * * 4626 0 0 E 98 * * 4802 1861 * * 5690 * 1813 3614 * 5345 * 3255 2726 5466 * * * * 98 0 * * * * * * 4626 0 0 I 99 * * * * * * * 1245 * 2331 * * * * * * 3726 1718 * * 99 0 * * * * * * 4626 0 0 G 100 2966 * 2220 4288 * 4442 * 4263 5382 * * 3657 * 5802 3535 1734 * * * * 100 0 * * * * * * 4626 0 0 N 101 3873 * * 5521 6199 * * 3414 * * 5382 754 * 4785 5345 4847 5174 * * 4005 101 0 * * * * * * 4626 0 0 Y 102 5032 * 5500 * 5108 * 3864 5725 * 2018 * * * * * 4929 3414 5690 6398 1231 102 0 * * * * * * 4626 0 0 T 103 * * 5382 2593 4802 * 4065 * * * 5174 * 6513 3322 * 3968 965 * * * 103 0 * * * * * * 4626 0 0 D 104 4099 * 2202 * * 1611 * * * * * 4405 * 3096 4584 3477 3305 * * * 104 0 * * * * * * 4626 0 0 T 105 * * 5792 4187 * * 3718 2929 6016 4152 * 1732 * 4068 * * 2256 3682 * * 105 0 * * * * * * 4626 0 0 I 106 * * * * * * * 295 * 4785 * * * * * * * 4802 5731 3414 106 44 5054 * 0 * * * 4626 1000 0 Y 107 5054 * 4313 4729 5068 * 5614 4584 * * * * * 5142 * 2302 2533 * * 1373 107 0 * * * * * * 4626 0 0 K 108 4545 * 2542 3654 * 3533 * 4694 2792 4785 * 2835 * 4401 4447 3380 6238 4116 * * 108 0 * * * * * * 4626 0 0 L 109 3657 4263 5728 4707 * * * 5802 * 739 4216 * * 6238 5243 4773 5466 * * 4584 109 0 * * * * * * 4626 0 0 L 110 * * * * * * * 2310 * 380 * * * * * * * 5054 * * 110 0 * * * * * * 4626 0 0 E 111 5466 * * 1220 * 6694 * * 2269 * * 4604 * 2890 4055 * 5243 3871 * * 111 0 * * * * * * 4626 0 0 V 112 3766 * 3429 1432 * * * 4496 3235 5500 * 3056 * 3155 5731 * * 4681 * * 112 0 * * * * * * 4626 0 0 S 113 950 * * * * * * * * * * * * * 3146 1560 * * * 5045 113 50 4869 * 2000 415 * * 4618 1000 0 Q 114 4431 * 5024 * * * 3416 * 2965 * * * * 809 4964 * * * * 3344 114 0 * * * * * * 4547 0 0 F 115 3633 * 3480 3012 6355 * * 3149 * 3286 * 2563 5865 5199 5429 5967 2460 4513 * * 115 0 * * * * * * 4452 0 0 Q 116 4921 * * 5180 * * 5472 * * 5710 * * * 568 5185 2791 4293 * * * 116 0 * * * * * * 4482 0 0 Q 117 * * * 2325 * * 5197 * 4247 * * * * 718 3153 * * * * * 117 0 * * * * * * 4506 0 0 E 118 * * 4867 669 * * * * 4379 4887 * 3633 * 2518 * * * * * * 118 49 * 4903 * * * * 4506 0 0 I 119 * * * 3535 * * * 6131 1101 * * 3694 * 3811 2111 4835 5777 * * * 119 0 * * * * 0 * 4453 0 1000 N 120 * * * * * * * * * 3877 4474 173 * * * * * * * * 120 0 * * * * * * 4184 0 0 E 121 * * * 1168 * * * * 2970 5909 3751 5300 * 3482 * * 4308 2548 * * 121 0 * * * * * * 4184 0 0 K 122 * * * * 4056 * 2433 * 1594 * * 4922 * 2386 3526 * * * * 3153 122 0 * * * * * * 4184 0 0 D 123 3963 * 1493 1421 * * * * 3174 * * 3375 * * * * * * * * 123 0 * * * * * * 4137 0 0 N 124 * * * * 3087 * * * * 302 * 5584 * * * * * 4304 * * 124 0 * * * * * * 4137 0 0 L 125 5028 * * 4984 * * * * 4499 865 * * * 1839 * * 4675 * * 5278 125 0 * * * * * * 3903 0 0 T 126 1775 * * 2005 * * * * 1862 * * * * 3873 * 3508 5179 * * * 126 0 * * * * * * 3844 0 0 L 127 * * * * 3586 * * * * 125 * * * * * * * * * * 127 0 * * 0 * * * 3839 0 0 //