HHsearch 1.5 NAME c9bnlF_ FAM FILE c9bnlF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9bnlF_.a3m DATE Sat May 10 11:59:44 2025 LENG 120 match states, 120 columns in multiple alignment FILT 63 out of 65 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4083 -1.0357 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHC >ss_conf 9202322456777899999987788866644656899999898865234445421766431033563133346767631221352188899999986799 99999999999999877629 >Consensus lgxlxaagsxmgaasxaltxqxxxLxltvwGiKxLqaRvxaxExylkdqxllxxwGCxxkxichtxVpwnxswxnxsxxxiWxNmTWqqWekxIxnytxx IxxlLeeAqxQQekNxxeLl >c9bnlF_ LGFLGAAGSTMGAASITLTVQARNLLLTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNKSLDEIWNNMTWLQWDKEINNYTQL IYRLIEESQNQQEKNEKELL >UniRef50_Q699U6(515-657:840) Env protein n=3 Tax=Primate lentivirus group RepID=Q699U6_SIVCZ E=8e-21 s/c=0.71 id=48% cov=100% LGLLSAAGTAMGSAATALTLQSQTLLagivqqqqklleaveaqqhllgLTVWGVKNLNARLTALETYLRDQAIMSNWGCAFKQICHTAVTWQQACGNNSr cPTPQWENMTWHTWERQVDNLTDHIDNLLREAQEQQEKNVHDL- >UniRef50_B7FCA6(552-689:884) Env protein n=2 Tax=Simian immunodeficiency virus RepID=B7FCA6_SIVCZ E=1e-18 s/c=0.68 id=49% cov=98% LGFLGLAGSAMGTVSTVLTIQSQHLLagilqqqknllelvekqqellrLTIWGVKNLQARLSAIEGFLEDQLKLKQWGCELTQVCHTNVPWNESW---NA TPNWNNETWQHWYRRTDELQANISVLLVEAHNTEQKNMFEL- >UniRef50_Q64G85(22-79:145) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G85_9HIV1 E=2e-12 s/c=1.26 id=48% cov=48% ------------------------------GIKQLHARVLALERYLKDQQLLRDLGLLWKTHLHHCCaLGTVVGGNRTKDYIWDNMTW------------ --------------------- >UniRef50_Q9DKV4(563-705:849) Envelope n=25 Tax=Ovine/caprine lentivirus group RepID=Q9DKV4_CAEV E=6e-18 s/c=0.64 id=27% cov=94% MAIVAAAGASLGVAnaiqqsytrdavqtlANATAVQQQVLEASyamiqhvAKGIRILEARVARMEVMMDRMMLYQEVDCW--HYHQYCVTSTRADIVNyi NWTRFKDNCTWQEWEREISAHEGNITILLKESaritQLAQQK------ >UniRef50_Q64G66(29-98:98) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G66_9HIV1 E=3e-15 s/c=1.18 id=45% cov=59% --------------------------------------VLAIKKYLKNQPLLGISGCSCKTHLHHCCTLGLYWSLQSQKKIQNHITYMQWNKKISNYTGT IYKLLNES------------ >UniRef50_Q3Y655(6-104:143) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y655_9HIV1 E=2e-11 s/c=0.71 id=41% cov=65% ---------------------------------------SALERYLKDQQLLGIWGCSGNSSAPLLCLGTLV-GVINLSMIFGRTCLgCSGIEKLSNYTN TIYKLLEDSQIQQDNNEK--- >UniRef50_Q64G54(17-106:139) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=Q64G54_9HIV1 E=1e-13 s/c=0.86 id=31% cov=75% ------------------------------GIKQLQTRVLALGKIPKGSTAPRNLGLLWKTHLHHCCAVESSWSNKSQGAIWvTRLGWSAIEKLIITQT- HYTGCLKNRKTSRNKLKRDLL >UniRef50_Q64FP6(10-106:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=8e-08 s/c=0.60 id=50% cov=33% ---------------------------------------------------------------------------NPLNEIWNNMTWQPWDKEISNFHTD IYSLIEDRRTSRKR------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 3245 * 450 2978 * * * * * * 4822 * * 1 0 * * * * * * 2681 0 0 G 2 2187 * * * * 358 * * * * * * * * * * * * * * 2 0 * * * * * * 2681 0 0 F 3 * * * * 592 * * 2978 * 2900 * * * * * * * 3722 * * 3 0 * * * * * * 2681 0 0 L 4 * * * * * * * * * 196 * * * * * * * 2978 * * 4 0 * * * * * * 2681 0 0 G 5 2172 * * * * 1645 * * * * * * * * * 1125 * * * * 5 0 * * * * * * 2681 0 0 A 6 466 * * * * 4127 * * * 3998 * * * * * * 2678 * * * 6 0 * * * * * * 2681 0 0 A 7 0 * * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 2709 0 0 G 8 * * * * * 0 * * * * * * * * * * * * * * 8 0 * * * * * * 2709 0 0 S 9 2330 * * * * 4941 * * * * * * * * * 741 2553 * * * 9 0 * * * * * * 2754 0 0 T 10 1281 * * * * * * * * * * * * * * 3060 1334 3796 * * 10 0 * * * * * * 2754 0 0 M 11 * * * * * * * * * 3148 173 * * * * * * * * * 11 0 * * * * * * 2809 0 0 G 12 * * * * * 44 * * * * * * * * * 5044 * * * * 12 0 * * * * * * 2809 0 0 A 13 676 * * * * * * * * 4748 * * * * * 3106 3215 3148 * * 13 0 * * * * * * 2809 0 0 A 14 616 * * * * * * * * * * * * * 4275 * * 1757 * * 14 173 3148 * 3907 100 * * 2809 1000 0 S 15 1657 * * * * 3846 * * * * * * * * * 705 * * * * 15 0 * * * * * * 2903 0 0 I 16 * * * * * * * 2967 * 4476 5367 3233 * * * * 1108 2104 * * 16 0 * * * * * * 2903 0 0 T 17 735 * * * * 4105 * 3970 * * * * * * * * 2240 3931 * * 17 0 * * * * * * 3109 0 0 L 18 * * * * * * * 3726 * 380 4841 * * * * * 3387 5306 * * 18 0 * * * * * * 3109 0 0 T 19 2450 * * 3100 * * * * * * * * * * * 4557 683 4841 * * 19 25 5862 * 4459 67 * * 3109 1000 0 V 20 1766 * * * * 4096 * 3471 * 5020 * * * * * * * 926 * * 20 204 2920 * 4459 67 * * 2941 1710 0 Q 21 * * 4096 * * * * * * * * * * 87 * * * * * * 21 0 * * * * * * 2941 0 0 A 22 2629 * * * * * * * * * * * * 1150 * 1474 5160 * * * 22 0 * * * * * * 2941 0 0 R 23 * * * * * * 1717 * * * * * * 1531 1628 5245 * * * * 23 74 4320 * 4459 67 * * 2941 1451 0 N 24 * * 5701 * * 5345 3245 * * 1775 3612 5523 * 4910 * 2681 2846 2982 * * 24 215 3641 4096 4487 66 * * 2941 1597 0 L 25 * * * * * * * * * 0 * * * * * * * * * * 25 0 * * * * * 0 3070 0 1000 L 26 * * * 3347 * * * * 3082 1208 * 5886 * 1999 3579 * * * * * 26 766 1280 * 4459 67 * 0 3070 2416 1000 L 27 3347 * * * * * * * * 177 * * * * * 5886 * * * * 27 0 * * * * * 0 3070 0 1000 T 28 * * * * * * * * * * * * * * 5886 1461 690 * * * 28 149 3347 * 2807 222 * 0 3070 1000 1000 H 29 2981 * * * * * 5535 2033 * * * * * * * 5876 * 760 * * 29 0 * * * * 0 * 3057 0 1000 W 30 * * * * * 3562 * * 2982 * * * * * * * * * 373 5909 30 0 * * * * * * 2941 0 0 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 3341 0 0 I 32 5744 * * * * * 3850 662 * * * * * * * * 4219 2143 * * 32 0 * * * * * * 3341 0 0 K 33 * * * * * * * * 299 * * * * * 2416 * * * * * 33 0 * * * * * * 3341 0 0 Q 34 * * * * * * * 2950 * * * 1672 * 1027 * * 3921 * * * 34 0 * * * * * * 3341 0 0 L 35 3926 * * * * * * * * 98 * * * * * * * * * * 35 0 * * * * * * 3343 0 0 Q 36 * * * 2954 * * 3957 * * * * 3190 3926 813 4008 * * * * * 36 0 * * * * * * 3343 0 0 A 37 419 * * * * 3926 * * * * * * * * * * 2738 4777 * * 37 0 * * * * * * 3343 0 0 R 38 * * * * * * * * 3594 * * * * * 125 * * * * * 38 0 * * * * * * 3343 0 0 V 39 * * * * * * * 5420 * 1991 4875 * * * * 3947 * 675 * * 39 0 * * * * * * 3389 0 0 L 40 2638 * * * * * * * * 932 * * * 5392 * 3926 2147 * * * 40 0 * * * * * * 3412 0 0 A 41 566 * * * * 2904 * * * * * * * * 2991 5568 4508 * * * 41 18 * 6311 * * * * 3409 0 0 V 42 * 3981 * * * * * 2117 * 1411 3892 * * * * 5493 * 2270 * 4905 42 0 * * * * * 0 3397 0 1000 E 43 * * * 308 * 3334 * * 4730 * * * * * 4880 * * * 5527 * 43 0 * * * * * 0 3605 0 1000 H 44 4105 * * 5851 * 3666 6308 * 1315 * * 5535 * * 1897 6722 3967 3883 * * 44 32 5527 * 0 * * 0 3605 1000 1000 Y 45 * * * * 4762 * * 2909 * 3345 3883 * * * * * 3994 * * 734 45 0 * * * * * 0 3605 0 1000 L 46 * * * * * * * 3609 * 759 3926 * 2978 * * 5608 * 3737 * 4681 46 0 * * * * * 0 3663 0 1000 R 47 5643 * 3008 3156 * 4681 * * 1038 * * * * 3628 2872 * * * * * 47 0 * * * * * 0 3663 0 1000 D 48 * * 783 4860 * 2978 6347 4681 * * * 3610 * * 3008 * * * * * 48 0 * * * * * 0 3663 0 1000 Q 49 * * * * * * * * * * 3008 4681 * 495 * 2978 * * * * 49 0 * * * * * 0 3663 0 1000 Q 50 2178 * * 6349 * * * * * 5663 3008 * 4645 1472 * 3728 2978 5660 * * 50 0 * * * * * 0 3663 0 1000 L 51 2978 * * * 6732 * * 4004 3562 944 * * * 4724 4026 4681 * 4094 * * 51 0 * * * * * 0 3663 0 1000 L 52 * * * * * * * * * 542 5446 * 2978 * * 4681 * * * 3008 52 0 * * * * * 0 3663 0 1000 G 53 4297 * * * * 2025 4094 * 4198 * * 2451 * 3926 2423 3105 * 4681 * * 53 0 * * * * * 0 3663 0 1000 I 54 6133 * 3446 2551 4681 * * 2152 * 2866 6830 3088 * 3723 * 3322 5643 * * * 54 0 * * * * * 0 3663 0 1000 W 55 * * * * 5643 4681 * 4860 * 2029 * * * * * 4645 * 3926 870 6830 55 0 * * * * 0 * 3663 0 1000 G 56 * * 2939 * * 202 * * * * * * * * * * * * * * 56 0 * * * * * * 3938 0 0 C 57 * 292 * * 5942 6627 * * * 2670 * * * * * * * * * * 57 0 * * * * * * 3938 0 0 S 58 2007 * * 4142 * * * * 4606 2670 * * * 5881 * 1519 * * 2939 * 58 204 * 2926 * * * * 3938 0 0 G 59 * 4282 5928 * 3116 1444 * * * 4419 * 3652 * * * * * * 1630 * 59 12 * 6956 * * * 0 3423 0 1234 K 60 5313 * * * * * * * 503 * 4110 4902 * * 3055 6579 4414 * * * 60 119 3661 * 0 * 372 2139 3422 1559 1439 L 61 5966 * * * * * 2388 6188 * 2288 * * * 1608 * 4058 2594 5583 * * 61 0 * * * * * 0 4047 0 1000 I 62 * * * * * * 2893 1377 * 4921 * * * * * 3691 * 2022 * 3015 62 0 * * * * * 0 4097 0 1000 C 63 4091 621 * * * * 3347 * * 2893 * * * 4098 * * * * * * 63 0 * * * * * 0 4097 0 1000 C 64 * 6430 * * * * 834 * * * * * 3975 3967 5194 * 2353 * * 3701 64 0 * * * * * 0 4181 0 1000 T 65 * 4784 * * * * 2980 * * 4217 * * * * * 4762 671 * * 3081 65 0 * * * * * 0 4258 0 1000 N 66 4001 1830 6811 * * * * 5133 * 4954 5540 2662 * * 5892 2682 2221 * 5655 * 66 0 * * * * * 0 4258 0 1000 V 67 4784 2319 * * * * * * * * * * * * * * * 390 * * 67 61 5554 5644 0 * * 0 4258 1000 1000 P 68 4484 * * 3714 * * * * 4759 3441 * * 858 * * * 2332 * * * 68 41 * 5153 * * * 0 4257 0 1318 W 69 * * * * * 2872 * * * 4246 * * * * * 3047 * 4797 613 * 69 22 * 6025 * * * 0 4255 0 1598 N 70 * * * 3661 * 4234 * 5211 5948 * * 1093 * 4541 * 4969 1832 * * * 70 71 * 4375 * * * 0 4257 0 1608 S 71 5154 * 4183 4541 5676 * * 5007 4572 2606 * 3329 * 5058 2949 2483 4540 3746 * 4022 71 93 * 3997 * * 2738 234 4324 0 1921 S 72 2806 * * 5183 * * * * * * * * * 4442 * 1353 2535 2659 * 4032 72 119 * 3658 * * 1908 447 4296 0 2033 W 73 * 5113 4144 4149 * 3100 * * * * * * * 5620 5716 4439 * * 608 * 73 146 4372 4385 0 * 1289 760 4092 1459 2551 S 74 4585 * * 4722 * 2188 * 2791 * * * 6173 4662 * * 1427 5151 3280 * * 74 112 5605 4215 0 * 1804 487 4029 1000 2221 N 75 4302 * * 5713 * 4333 * * * 4158 * 733 4813 * * 5627 * 2579 * * 75 123 3988 5764 2311 325 * 0 3961 1394 2333 K 76 4689 * 3803 * * * 4458 2778 2358 * * 2260 * 3497 3032 5264 4118 * * * 76 248 3116 4548 879 1132 593 1568 4166 1612 2339 S 77 * * 4436 * * * * * 4484 3765 * 1958 5537 * * 1156 3214 * * * 77 110 4384 5293 2403 302 2106 381 4269 1391 2090 L 78 5416 * 5087 4028 6240 * * 3409 4655 1876 5190 5529 5020 2450 * * 4934 * 3685 3428 78 0 * * * * 600 1556 4278 0 1978 D 79 * * 2311 3309 * 3911 * * 4028 * * 4425 5326 3316 4507 3978 1783 * * * 79 65 4507 * 0 * 592 1570 4315 1000 1306 E 80 4203 4640 3387 2741 * 5466 * * 3790 * 4324 * 1640 6328 3665 4635 6270 * * 4315 80 0 * * * * * 0 4159 0 1000 I 81 5214 * 2788 5561 3665 5466 * 853 * 5466 * 3614 5372 5404 * * * * * * 81 33 5466 * 2585 263 * 0 4159 1000 1000 W 82 * * * * 3253 * * * 3772 * * * * 4358 * * * * 371 * 82 104 4143 6278 0 * 0 * 4316 1000 1000 N 83 5375 * 2155 3325 * 2574 * * 5459 * * 1938 * 3486 * * 3333 * * 6449 83 0 * * * * 0 * 4228 0 1000 N 84 * * * * * * 4159 * 4602 * * 409 * * 3255 5520 5423 * * * 84 0 * * * * * * 4317 0 0 M 85 * 3913 4469 3825 * * * 4464 * 2735 877 * * 5484 * * 4174 * * * 85 0 * * * * * * 4409 0 0 T 86 * 4436 4541 * * 4172 * * * * * * * * * * 225 * * * 86 0 * * * * * * 4409 0 0 W 87 * * * * * * * * * 3488 * * * * * * * * 208 4464 87 139 3443 * 0 * * * 4409 1432 0 L 88 * 4270 * * * * 5341 4630 4279 3182 2375 * * 1219 * 4126 * * * 4581 88 0 * * * * * * 4273 0 0 Q 89 4126 * * 1517 * * 5424 * 5229 * * 4581 5322 1321 * 4270 5341 * * * 89 0 * * * * * * 4273 0 0 W 90 * * * * * 3417 * 4126 * * * * * * * * * * 236 * 90 0 * * * * * * 4273 0 0 D 91 * * 1831 1142 * * 4182 3419 * * * 4518 * 5229 * 5404 * * * 5426 91 0 * * * * * * 4272 0 0 K 92 * * * 3105 * * * * 1507 4968 5274 * * 4829 1468 * 3693 * * * 92 0 * * * * * * 4377 0 0 E 93 * * 4377 1815 * * 5594 * 2219 2782 * 5172 * 3156 3041 5300 * * * * 93 0 * * * * * * 4377 0 0 I 94 * * * * * * * 965 * 3322 * * * * * * 3494 1742 * * 94 0 * * * * * * 4377 0 0 N 95 3179 * 2041 4596 * 4681 * 4075 5035 * * 3414 * 5407 3809 1798 * * * * 95 0 * * * * * * 4377 0 0 N 96 3830 * * 5179 6229 * * * * * 5035 735 * 5048 5172 4787 3454 * * 3799 96 0 * * * * * * 4377 0 0 Y 97 5496 * 5324 * 4463 * 4254 5711 * 1827 * * * 4075 * 4849 * 5594 6109 1234 97 0 * * * * * * 4377 0 0 T 98 * * 5035 2630 4377 * 4948 * * * 4968 * 6273 4137 * 3823 849 * * * 98 88 * 4075 * * * * 4377 0 0 Q 99 3829 * 2489 * * 1483 * * * * * 3984 * 2719 * 3286 3717 * * * 99 0 * * * * 0 * 4161 0 1000 L 100 * * 4948 3914 * * 3636 3327 6107 3787 * 1604 * 5407 * * 2374 3492 * * 100 0 * * * * * * 4377 0 0 I 101 * * * * * * * 258 * 5048 * * * * * * * 4377 5274 4075 101 0 * * * * * * 4377 0 0 Y 102 * * 4312 4298 4897 * 5511 * * * * * * 4900 * 2112 2460 * * 1333 102 0 * * * * * * 4377 0 0 R 103 4171 * 2534 3487 * 3326 * 5024 2810 5048 * 3282 * 4316 5275 3082 6030 3896 * * 103 0 * * * * * * 4377 0 0 L 104 3298 4075 5322 4651 * * * 5407 * 789 4031 * * 6030 5096 4621 5300 * * * 104 0 * * * * * * 4377 0 0 I 105 * * * * * * * 2008 * 412 * * * * * * * * * * 105 0 * * * * * * 4377 0 0 E 106 5300 * * 1198 * 6472 * * 2563 * * 4880 * 2650 4284 * 5096 3564 * * 106 0 * * * * * * 4377 0 0 E 107 4290 * 3028 1358 * * * 4182 3343 5298 * 3872 * 2917 5269 * * 5039 * * 107 0 * * * * * * 4377 0 0 S 108 781 * * * * * * * * * * * * * 3443 1616 * * * * 108 34 5435 * 2000 415 * * 4377 1000 0 Q 109 4578 * * * * * 3140 * 3456 * * * * 766 4368 * * * * 3093 109 0 * * * * * * 4337 0 0 N 110 3305 * 3266 2772 * * * 2989 * 4157 * 2469 5709 5026 5256 6047 2799 4289 * * 110 0 * * * * * * 4335 0 0 Q 111 5417 * * 4803 * * 5175 * * 5269 * * * 581 4962 3044 3939 * * * 111 0 * * * * * * 4059 0 0 Q 112 * * * 2510 * * 5051 * * * * * * 592 2933 * * * * * 112 0 * * * * * * 3881 0 0 E 113 * * 4255 804 * * * * 4210 4835 * 3392 * 2391 * * * * * * 113 0 * * * * * * 3881 0 0 K 114 * * * 3555 * * * * 1154 * * 3297 * 4225 1949 4930 5772 * * * 114 0 * * * * * * 3881 0 0 N 115 * * * * * * * * * 3474 5552 170 * * * * * * * * 115 0 * * * * * * 3729 0 0 E 116 * * * 1390 * * * * 2702 5502 3486 * * 3190 * * 4195 2401 * * 116 0 * * * * * * 3729 0 0 K 117 * * * * 3777 * 2280 * 1831 * * 4559 * 2688 3182 * * * * 2918 117 0 * * * * * * 3729 0 0 E 118 3684 * 1573 1123 * * * * 2978 * * * * * * * * * * * 118 0 * * * * * * 3644 0 0 L 119 * * * * * * * * * 107 * * * * * * * 3807 * * 119 0 * * * * * * 3575 0 0 L 120 * * * * * * * * * 0 * * * * * * * * * * 120 0 * * 0 * * * 2604 0 0 //