HHsearch 1.5 NAME c9bhhI_ FAM FILE c9bhhI_ COM /bmm/www/servers/phyre2/HH/hhmake -i c9bhhI_.a3m DATE Sat Oct 25 12:24:48 2025 LENG 151 match states, 151 columns in multiple alignment FILT 7 out of 9 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.3842 -1.5761 SEQ >ss_pred CCEEEEEEECCCEEEEEEEECCEECCEEEEEEEECCHHHHHHEEEECCEEECCHHHHCHHHHHHHCCCCCCCCCEEECCEEEEEEECCCEEEEECCCCCC CCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEECCCCCCCC >ss_conf 9605724425732126999746440101222332576563101100000101066503354332133100075534324010169706147862134788 878872141798399999727887775168999854781699665464049 >Consensus xdxxFxvxxdGxixGyAxxvgxkvxkPxHVkGxidxxxLaxlkfxkssxyDlExAxxPxxMrsdaxxytxexpegxYnwhhGavQyxxgrftipxgxgxx GDSGRPixDNxGrVVaIVLGGxnegxrTaLSVvxwnKxxxxkxtpexxxew >c9bhhI_ NDCIFEVKHEGKVTGYACLVGDKVMKPAHVKGTIDNADLAKLAFKRSSKYDLECAQIPVHMKSDASKFTHEKPEGYYNWHHGAVQYSGGRFTIPTGAGKP GDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWNKDIVTKITPEGAEEW >UniRef50_Q80S25(120-270:1241) Structural polyprotein n=153 Tax=Alphavirus RepID=Q80S25_9VIRU E=1e-76 s/c=1.89 id=86% cov=101% SDCIFEVKLDGEVTGYACLVGDKVMKPAHVKGVIQNDELAKLSFKKSSKYDLECAQIPVKMRSDASKYTHEKPEGHYNWHHGAVQYTNGRFTIPTGAGKP GDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWNKDMVTRVTPEGSVEW >UniRef50_P03316(112-264:1245) E1 envelope glycoprotein n=116 Tax=WEEV complex RepID=POLS_SINDV E=4e-70 s/c=1.73 id=68% cov=100% -DRLFDVKNeDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGG RGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNsKGKTIKTTPEGTEEW >UniRef50_Q86925(115-267:1244) E1 envelope glycoprotein n=959 Tax=Alphavirus RepID=POLS_AURAV E=4e-66 s/c=1.64 id=64% cov=100% -DRTFVGKNeDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEVFYNWHHGAVQFSGGRFTIPTGVGG PGDSGRPILDNSGKVVAIVLGGANEVPGTALSVVTWNkKGAAIKTTHEDTVEW >UniRef50_Q8QL52(135-273:1322) E1 envelope glycoprotein n=104 Tax=Alphavirus RepID=POLS_SLDV E=1e-53 s/c=1.51 id=41% cov=91% ----FPVYHDGAISGYAVLIGSRVFKPAHVKGKFDHPELADIKFQVAEVMDLEAAAYPKCMRDQAAEPATMM-DGVYNGEYGNIQeWRTILYSMRAAEAS RGDSGRPFTDNSGKVVGIVLGGGPDGRRTRLSVIGFDKKLKAR--------- >UniRef50_Q993S2(1-36:661) Structural polyprotein (Fragment) n=1 Tax=Seal louse virus RepID=Q993S2_9VIRU E=4e-10 s/c=1.83 id=76% cov=25% ---------------------------------------------------------------------------------------------------- ---------------AIVLGGANEGERTALSVVTWNKNTVVKVTPEETVEW >UniRef50_P36329(124-275:1255) E1 envelope glycoprotein n=477 Tax=root RepID=POLS_EEVV3 E=3e-70 s/c=1.74 id=62% cov=101% SDKTFPIMLEGKINGYACVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADVPQNMRADTFKYTHEKPQGYYSWHHGAVQYENGRFTVPKGVGAK GDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNeKGVTVKYTPENCEQW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 1666 * * * 546 * * * * 1 0 * * * * * * 1337 0 0 D 2 * * 0 * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1546 0 0 C 3 * 1445 * * * * * * 2106 * * * * * 1321 * * * * * 3 0 * * * * * * 1546 0 0 I 4 * * * * * * * 1445 * 2358 * * * * * * 1193 * * * 4 0 * * * * * * 1546 0 0 F 5 * * * * 0 * * * * * * * * * * * * * * * 5 0 * * * * * * 1853 0 0 E 6 * * 2759 1878 * * * * * * * * 1226 * * * * 2710 * * 6 0 * * * * * * 1853 0 0 V 7 * * * * * 2710 * 2520 * * * * * * * * * 572 * * 7 0 * * * * * * 1853 0 0 K 8 * * * * * * * * 804 * 2520 * * * * * * * * 1983 8 0 * * * * * * 1853 0 0 H 9 * * * * * * 1365 * * 1684 * 1734 * * * * * * * * 9 516 1734 * 0 * * * 1853 1170 0 E 10 * * 535 1691 * * * * * * * * * * * * * * * * 10 0 * * * * * * 1853 0 0 G 11 * * * * * 0 * * * * * * * * * * * * * * 11 0 * * * * * * 1853 0 0 K 12 1983 * 2759 2869 * * * * 1113 * * * * * * * * * * * 12 0 * * * * * * 1853 0 0 V 13 * * * * * * * 785 * * * * * * * * * 1252 * * 13 0 * * * * * * 1853 0 0 T 14 * * * * * * * 2759 * * 2710 2520 * * * 1983 1878 * * * 14 0 * * * * * * 1853 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1853 0 0 Y 16 * * * * * * 2759 * * * * * * * * * * * * 231 16 0 * * * * * * 1853 0 0 A 17 0 * * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 1853 0 0 C 18 * 1163 * * * * * * * 2759 * * * * * * * 1301 * * 18 0 * * * * * * 1853 0 0 L 19 1734 * * * * * * * * 929 * * * * * * * 2520 * * 19 0 * * * * * * 1853 0 0 V 20 * * * * * * * 1983 * * 1734 * * * * * * 1163 * * 20 0 * * * * * * 1853 0 0 G 21 * * * 1734 * 516 * * * * * * * * * * * * * * 21 0 * * * * * * 1853 0 0 D 22 * * 1878 * * 1074 * * * * * * * * * 1983 * * * * 22 0 * * * * * * 1853 0 0 K 23 * * * * * * * * 421 * * * * * 1983 * * * * * 23 0 * * * * * * 1853 0 0 V 24 * * * * * * * * * 2520 * * * * * * * 276 * * 24 0 * * * * * * 1853 0 0 M 25 * * * * 1226 * * 2710 * * 1252 * * * * * * * * * 25 0 * * * * * * 1853 0 0 K 26 * * * * * * * * 276 * * * * * 2520 * * * * * 26 0 * * * * * * 1853 0 0 P 27 * * * * * * * * * * * * 0 * * * * * * * 27 0 * * * * * * 1853 0 0 A 28 929 * * * * * * * * 1734 2520 * * * * * * * * * 28 0 * * * * * * 1853 0 0 H 29 * * * * * * 0 * * * * * * * * * * * * * 29 0 * * * * * * 1853 0 0 V 30 * * * * * * * * * * * * * * * * * 0 * * 30 0 * * * * * * 1853 0 0 K 31 * * * 2520 * * * * 276 * * * * * * * * * * * 31 0 * * * * * * 1853 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 1853 0 0 T 33 * * * * * * * * 1226 * * * * * * * 1198 2869 * * 33 0 * * * * * * 1853 0 0 I 34 * * * * 1983 * * 421 * * * * * * * * * * * * 34 0 * * * * * * 1853 0 0 D 35 * * 212 * * * * * * * * * * 2869 * * * * * * 35 0 * * * * * * 1853 0 0 N 36 * * * * * * 853 * * * * 1163 * * * * * * * * 36 0 * * * * * * 1853 0 0 A 37 2886 * 1684 * * * * * * * * * 853 * * * * * * * 37 0 * * * * * * 1853 0 0 D 38 2710 * 2886 1359 * * * * * * * * * * * * * 1634 * * 38 0 * * * * * * 1853 0 0 L 39 * * * * * * * * * 0 * * * * * * * * * * 39 0 * * * * * * 1853 0 0 A 40 231 * * * * * * * * * * * * * * 2759 * * * * 40 0 * * * * * * 1853 0 0 K 41 2520 * 1983 * * * * * 804 * * * * * * * * * * * 41 0 * * * * * * 1853 0 0 L 42 * * * * * * * 1983 * 421 * * * * * * * * * * 42 0 * * * * * * 1853 0 0 A 43 2886 * * * * * * * 458 * * * * * * 2869 * * * * 43 0 * * * * * * 1853 0 0 F 44 * * * * 276 * * * * * * * * * * * 2520 * * * 44 0 * * * * * * 1853 0 0 K 45 * * * * * * * * 1163 * * * * 1983 * * 1734 * * * 45 0 * * * * * * 1853 0 0 R 46 * * * * * * * * 709 * * * * * 2886 * * 1983 * * 46 0 * * * * * * 1853 0 0 S 47 1226 * * * * * * * * * * * * * * 804 * * * * 47 0 * * * * * * 1853 0 0 S 48 * * * 1983 * * * * * * * * * * * 421 * * * * 48 0 * * * * * * 1853 0 0 K 49 2759 * * * * * * * 1163 * * * * * * 2710 * 1983 * * 49 0 * * * * * * 1853 0 0 Y 50 * * * * * * * * * * 1983 * * * * * * * * 421 50 0 * * * * * * 1853 0 0 D 51 * * 0 * * * * * * * * * * * * * * * * * 51 0 * * * * * * 1853 0 0 L 52 * * * * * * * * * 516 1734 * * * * * * * * * 52 0 * * * * * * 1853 0 0 E 53 * * * 0 * * * * * * * * * * * * * * * * 53 0 * * * * * * 1853 0 0 C 54 1983 1878 * * 1734 * * * * * * * * * * * * * * 2520 54 0 * * * * * * 1853 0 0 A 55 0 * * * * * * * * * * * * * * * * * * * 55 0 * * * * * * 1853 0 0 Q 56 1983 * 2520 * * * * * 2710 * * * * 1252 * * * * * * 56 0 * * * * * * 1853 0 0 I 57 * * * * * * * 1878 * 1734 * * * * * * * 2520 * 1983 57 0 * * * * * * 1853 0 0 P 58 * * * * * * * * * * * * 0 * * * * * * * 58 0 * * * * * * 1853 0 0 V 59 * * * * * * * * 1983 * * * * 2520 * * 2710 1252 * * 59 0 * * * * * * 1853 0 0 H 60 * 1983 * 2710 * * 2886 * 2869 * * 1634 * * * * * * * * 60 0 * * * * * * 1853 0 0 M 61 * * * * * * * * * * 0 * * * * * * * * * 61 0 * * * * * * 1853 0 0 K 62 * * * * * * * * 1795 * * * * * 490 * * * * * 62 0 * * * * * * 1853 0 0 S 63 2520 * 1983 * * * * * * * * * * * * 804 * * * * 63 0 * * * * * * 1853 0 0 D 64 * * 739 2759 * * * * * * * * * 1983 * * * * * * 64 0 * * * * * * 1853 0 0 A 65 276 * * * * * * * * * * * * * * * 2520 * * * 65 0 * * * * * * 1853 0 0 S 66 1983 * * * 1074 * * * * * * * * * * 1878 * * * * 66 0 * * * * * * 1853 0 0 K 67 * * * 1983 * 2710 * * 1163 * * * * * * * 2759 * * * 67 0 * * * * * * 1853 0 0 F 68 * * * * 2886 * * * * * * * 1983 * * * * * * 709 68 0 * * * * * * 1853 0 0 T 69 1983 * * * * * * * * * * * * * * * 421 * * * 69 0 * * * * * * 1853 0 0 H 70 * * * * * * 1163 * * * * * * * * 2759 1301 * * * 70 0 * * * * * * 1853 0 0 E 71 * * * 421 * * * * * * 1983 * * * * * * * * * 71 0 * * * * * * 1853 0 0 K 72 * * * * * * 1734 * 1163 * 1983 * * * * * * * * * 72 421 * 1983 * * * * 1853 0 0 P 73 * * * * * * * * * * * * 0 * * * * * * * 73 0 * * * * 0 * 1546 0 1000 E 74 * * 1983 804 * * * * * * * * * 2520 * * * * * * 74 0 * * * * * * 1853 0 0 G 75 * * * * * 239 * * * * * * * * * * * 2710 * * 75 0 * * * * * * 1853 0 0 Y 76 * * * * 1734 * 2869 * * * * * * * * * * 1983 * 1691 76 0 * * * * * * 1853 0 0 Y 77 * * * * * * * * * * * * * * * * * * * 0 77 0 * * * * * * 1853 0 0 N 78 * * * * * * * * * * * 276 * * * 2520 * * * * 78 0 * * * * * * 1853 0 0 W 79 * * * * * 1983 * * * * * * * * * * * * 421 * 79 0 * * * * * * 1853 0 0 H 80 * * * 1983 * * 421 * * * * * * * * * * * * * 80 0 * * * * * * 1853 0 0 H 81 * * * * * * 421 * * * * * * * * * * * * 1983 81 0 * * * * * * 1853 0 0 G 82 * * * * * 0 * * * * * * * * * * * * * * 82 0 * * * * * * 1853 0 0 A 83 421 * * * * * * * * * * 1983 * * * * * * * * 83 0 * * * * * * 1853 0 0 V 84 * * * * * * * 1983 * * * * * * * * * 421 * * 84 0 * * * * * * 1853 0 0 Q 85 * * * * * * * * * * * * * 0 * * * * * * 85 421 1983 * 0 * * * 1853 1000 0 Y 86 * * * * 2710 * * * * * * * * * * * * * 1983 751 86 0 * * * * * * 1853 0 0 S 87 * * * 2520 * * * * * * * * * * 1983 1198 2869 * * * 87 0 * * * * * * 1853 0 0 G 88 * * * * * 1198 * * * * * 1684 * * * * 1983 * * * 88 0 * * * * * * 1853 0 0 G 89 * * * * * 421 * 1983 * * * * * * * * * * * * 89 0 * * * * * * 1853 0 0 R 90 * * * * * * * * * 1983 * * * * 421 * * * * * 90 0 * * * * * * 1853 0 0 F 91 * * * * 421 * * * * * * * * * * * * * * 1983 91 0 * * * * * * 1853 0 0 T 92 * * * * * * * * * * * * * * * 1983 421 * * * 92 0 * * * * * * 1853 0 0 I 93 * * * * * * * 804 * * 1983 * * * * * * 2520 * * 93 0 * * * * * * 1853 0 0 P 94 * * * * * * * * * * * * 421 * 1983 * * * * * 94 0 * * * * * * 1853 0 0 T 95 1983 * * * * * * * 2520 * * * * * 2759 * 1235 * * * 95 0 * * * * * * 1853 0 0 G 96 1983 * * * * 421 * * * * * * * * * * * * * * 96 0 * * * * * * 1853 0 0 A 97 1878 * * 1983 * * * * * * * * * * * * * 1074 * * 97 0 * * * * * * 1853 0 0 G 98 1983 * * * * 421 * * * * * * * * * * * * * * 98 0 * * * * * * 1853 0 0 K 99 2520 * * * * 1734 * * 1878 * * * * * * 1983 * * * * 99 0 * * * * * * 1853 0 0 P 100 * * * * * * * * 2520 * * * 1235 * 1319 * * * * * 100 0 * * * * * * 1853 0 0 G 101 * * * * * 0 * * * * * * * * * * * * * * 101 0 * * * * * * 1853 0 0 D 102 * * 0 * * * * * * * * * * * * * * * * * 102 0 * * * * * * 1853 0 0 S 103 * * * * * * * * * * * * * * * 0 * * * * 103 0 * * * * * * 1853 0 0 G 104 * * * * * 0 * * * * * * * * * * * * * * 104 0 * * * * * * 1853 0 0 R 105 * * * * * * * * * * * * * * 0 * * * * * 105 0 * * * * * * 1853 0 0 P 106 * * * * * * * * * * * * 0 * * * * * * * 106 0 * * * * * * 1853 0 0 I 107 * * * * 1983 * * 421 * * * * * * * * * * * * 107 0 * * * * * * 1853 0 0 F 108 * * * * 1878 * * * * 1612 2759 * * * * * 1983 * * * 108 0 * * * * * * 1853 0 0 D 109 * * 0 * * * * * * * * * * * * * * * * * 109 0 * * * * * * 1853 0 0 N 110 * * * * * * * * * * * 0 * * * * * * * * 110 0 * * * * * * 1853 0 0 K 111 * * * * * * * * 1878 * * * * 2520 * 853 * * * * 111 0 * * * * * * 1853 0 0 G 112 * * * * * 0 * * * * * * * * * * * * * * 112 0 * * * * * * 1853 0 0 R 113 * * * * * * * * 1301 * * * * * 751 * * * * * 113 0 * * * * * * 1853 0 0 V 114 * * * * * * * * * * * * * * * * * 0 * * 114 0 * * * * * * 1853 0 0 V 115 * * * * * * * * * * * * * * * * * 0 * * 115 0 * * * * * * 1853 0 0 A 116 426 * * * * 1967 * * * * * * * * * * * * * * 116 0 * * * * * * 1764 0 0 I 117 * * * * * * * 0 * * * * * * * * * * * * 117 0 * * * * * * 1764 0 0 V 118 * * * * * * * * * * * * * * * * * 0 * * 118 0 * * * * * * 1764 0 0 L 119 * * * * * * * * * 0 * * * * * * * * * * 119 0 * * * * * * 1764 0 0 G 120 * * * * * 0 * * * * * * * * * * * * * * 120 0 * * * * * * 1764 0 0 G 121 * * * * * 0 * * * * * * * * * * * * * * 121 0 * * * * * * 1764 0 0 A 122 708 * * * * 1967 * * * * * * * * * * * 2918 * * 122 0 * * * * * * 1764 0 0 N 123 * * 3030 * * * * * * * * 685 1967 * * * * * * * 123 0 * * * * * * 1764 0 0 E 124 * * 1967 426 * * * * * * * * * * * * * * * * 124 0 * * * * * * 1764 0 0 G 125 * * * * * 231 * * * * * * * * * * * 2756 * * 125 0 * * * * * * 1764 0 0 A 126 2156 * * 3094 * * * * * * * * 2756 * 1967 2918 3030 * * * 126 0 * * * * * * 1764 0 0 R 127 * * * * * 2756 * * * * * * * * 231 * * * * * 127 0 * * * * * * 1764 0 0 T 128 * * * * * * * * * * * * * * * * 0 * * * 128 0 * * * * * * 1764 0 0 A 129 426 * * * * * * * * * * * * * 1967 * * * * * 129 0 * * * * * * 1764 0 0 L 130 * * * * * * * * * 0 * * * * * * * * * * 130 0 * * * * * * 1764 0 0 S 131 * * * * * * * * * * * * * * * 0 * * * * 131 0 * * * * * * 1764 0 0 V 132 * * * * * * * * * * * * * * * * * 0 * * 132 0 * * * * * * 1764 0 0 V 133 * * * * * * * 1967 * * * * * * * * * 426 * * 133 0 * * * * * * 1764 0 0 T 134 * * * * * 1967 * * * * 2918 * * * * * 708 * * * 134 0 * * * * * * 1764 0 0 W 135 * * * * 1967 * * * * * * * * * * * * * 426 * 135 0 * * * * * * 1764 0 0 N 136 * * 1967 * * * * * * * * 426 * * * * * * * * 136 743 1312 * 0 * * * 1764 1427 0 K 137 * * * * * * * * 0 * * * * * * * * * * * 137 0 * * * * * * 1764 0 0 D 138 * * 2156 * * 1312 * * 1967 * * 3094 * * * * * * * * 138 0 * * * * * * 1764 0 0 I 139 2756 * * * * * * 3192 3030 1967 3120 * * * * * 3094 2918 * * 139 0 * * * * * * 1764 0 0 V 140 2756 * * * * * * * 1967 * * * * * * * 1973 1550 * * 140 0 * * * * * * 1764 0 0 T 141 1967 * * * * * * 1887 * * * * * * * * 2156 2003 * * 141 0 * * * * * * 1764 0 0 K 142 * * * * * * * * 668 * * * * * 1432 * * * * * 142 0 * * * * * * 1764 0 0 I 143 * * * * * * * 2730 * * * * * * * * 1537 1675 * 2384 143 0 * * * * * * 1509 0 0 T 144 * * * * * * * * * * * * * * * * 0 * * * 144 0 * * * * * * 1509 0 0 P 145 * * * * * * 2411 * * * * * 301 * * * * * * * 145 0 * * * * * * 1509 0 0 E 146 * * * 0 * * * * * * * * * * * * * * * * 146 0 * * * * * * 1509 0 0 G 147 * * 2411 2692 * 1102 * * * * * 2384 * * * * * * * * 147 0 * * * * * * 1509 0 0 A 148 2730 2384 * * * * * * * * * * * * * 2658 1002 * * * 148 0 * * * * * * 1509 0 0 E 149 * * * 1003 * * * * * * * * * * * * * 997 * * 149 0 * * * * * * 1509 0 0 E 150 * * * 307 * * * * * * * * * 2384 * * * * * * 150 0 * * * * * * 1509 0 0 W 151 * * * * * * * * * * * * * * * * * * 0 * 151 0 * * 0 * * * 1509 0 0 //