HHsearch 1.5 NAME c8zy1A_ FAM FILE c8zy1A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8zy1A_.a3m DATE Sat Feb 8 09:49:01 2025 LENG 1076 match states, 1076 columns in multiple alignment FILT 20 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.3202 -9.4840 SEQ >ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHCHHEEECCCCCCCCCCEEEEEECCCCCCCEEECCCEEEEECCCCCEEEEEEEEECCCCCEEEEEEECC CCEEEEEEECEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEEEEEECCCHHH HHHHHHHHHHHHHHEEECCCEEEEEEECCCCEEEEEEECCCCCHHHHEEEECCCCCCCCEECCCCCEEECCEEEEEECCCCCCCCCHHHCCCCCCCCCCC EEEEEEEECCCCCEEEEECCCCCCCCCCCCCCHHHCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE ECCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEECCEEEEEEEEEEEEEEEEECC CEEECCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCEEEEECC CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEEECCCEEEEECCEECCCCHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHCCEEEECCCCCHHHHHHHCCCCCHHEEEEEEEECCEEEECCCC CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEE EECCCCEEEEEEEEEEEECCCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCEEEEECEEEEEEEEEEEEECCC >ss_conf 9535677677642112111145011448663010001126312346631444311677861243165576504775123468861000675147997168 9679999612011048873014881678999602324122120789999999862378853899964654204423100012110044520120110145 6667763212432102020127999961774288888626550544222100223789710145534421235898202445566132217888764220 2567875201662124421233454322454701102203433565445303542211036776134300002477656453654210013567430122 0156545655401111210234420113554202234444101100122144412566520467633115776530232402568861068899997132 2031351567405763145543057726899851444403454056787722799721444402333321011234431012466520110111353000 3665433342223552543236640788530577863120452015663142167887778986435159972203408848999999999899899999 9998777756888999976432002122255477521210478767663015553210226742764044477542784200000011134347626767 8889888889898987411011002321123188889865050112278889879999999999999999888999999999999997448999999999 7510235788899999998866653024565555799999999999999999999999999999999751111025346875899970249981899999 7546865999985446653854444210689878989995402115406764456998000699985400010369 >Consensus xxxxxxxxxxxxxtxxxsxxxxxxxxdxxxxxxxxxlxxxxxxxxxsnxxxxxxxxxxxxxxxxxdgxxxxxxxxxxxxxxxxxgstxxnxsxsxvxxxx xxxixxxvcxxxxcxxpxxxxxxxxxxxxxixxxxxnxtxxxxxxxxxxxxxxxxxxxxgxxxxyxxxxpxxxxxxfxxxxxxlxxxxxlpxxxnxxxxx xxxxxxxxxaxxyxvxxlxxxxxlvxfdxnGtitxavdCxxxplxxLkCqxxsfxxxdGfYxxsxxxvxxxxxvvtxpxxxxxcxxxxxxnxtxxpsxxx wxrxxxxnCvxnxsxlxxsxxxxxxxxcxxvxxxxxxxxCxxsvtxdxfxxxxxxxxxlxxxxtxxlxxynyxlpxxxxxCxxxxnxxsixxxxxxxxxx fxxxxxxxxgxxxxxvxxspxxxxcxxxxxxxYxpxxxxxxxxxxGxxxxxyxxxxxxxxxxxxxxxvcxxxxxsxixxxvCvxYnIyGxtGxGvixxsx xxxxxxxxxxxxxsgxlxxfkxxxtgxxxxVxPCxxxxvsvvxxxxxxsxexAvlxxxixcsxvxxxxxxxxvxxxxxxxxxxxxxxyxxtxxgcxigax xxnxxxxCxxpxgxgxCxxxxnxgxxxxxxxxxxxxxxxxxxxxxxvxIPxnFtlsvtxEyiQxxxxkvsIDCaxYVCnxnxxCxxLLxqYgsfCxxIex aLxxxxxlxdxxxxxxxxxxxxxxxxxxxxxxgxxNfsxiLpxxxxxxxRSaIEDLLFxKVxtsglGtvddYkxCtxgxxiaDLxCAQyyNGImVLPgVv dxexmamYTasLxGgmaxggxTagxxsAxaiPFaxxvQaRlNylalttxVLxeNQkiiAnsFNxAigxIqxgfxttsxALxKIQdVVNxqxxALxxLxxQ LsxNFgAISsSixdIyxRLDxleAdaQVDRLItGRLxaLnayVtqxlxxxxevrxsrxLAxqKiNECVKSQSxRygFCGNGtHixSlxqxAPnGixFlHx xlvPtxxvxVxaxxGlCvxgxxxvpkxgxfvxxxxxwxiTxrxxyxPrxxtxxdxvxxxsCxvxxxxvnxtvxdxx >c8zy1A_ KCGTLSNKSPSKLTQTPSSRRGFYYFDDIFRSSIRVLTTGHFLPFNTNLTWYLTLKSDNPNINFGDGVYFGLTEKSNVFRGWIFGSTLDNTTQSAVLFNN GTHIVIDVCNFNFCADPMFAVNSGQPYKTWIYTSAANCTYHRAHAFFKHFREHLFKNVDGFLYVYHNYEPIDLNSGFPSGFSVLKPILKLPFGLNITYVK AIMTLFSSDASAYFVGHLKPLTMLVDFDENGTIIDAIDCSQDPLSELKCTTKSFTVEKGIYQTSNFRVTPTTEVVRFPNITQLCPFNEVFNITSFPSVYA WERMRITNCVADYSVLYNSSASFSTFQCYGVSPTKLNDLCFSSVYADYFVVKGDDVRQIAPAQTGVIADYNYKLPDDFTGCVIAWNTNSLDSSNEFFYRR FRHGKIKPYGRDLSNVLFNPSGGTCSAEGLNCYKPLASYGFTQSSGIGFQPYRVVVLSFELLNAPATVCGPKQSTELVKNKCVNFNFNGLTGTGVLTNST KKFQPFQQFGRDVSDFTDSVRDPKTLEILDIAPCSYGGVSVITPGTNASSSVAVLYQDVNCTDVPTMLHADQISHDWRVYAFRNDGNIFQTQAGCLIGAA YDNSSYECDIPIGAGICAKYTNVGHSILAYTMSLGDNQDIVYSNNTIAIPMNFSISVTTEVLPVSMTKTSVDCNMYICGDSTECSNLLLQYGSFCTQLNR ALAGIAVEQDRNTRDVFAQTKAMYKTPSLKDFGGFNFSQILPDPAKPSSRSFIEDLLYNKVTLADPGFMKQYGDCLGGVNARDLICAQKFNGLTVLPPLL TDEMIAAYTAALISGTATAGFTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQDSLSTTTTALGKLQDVINQNAIALNTLVKQ LSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHV TYVPSQEQNFTTAPAICHEGKAHFPREGVFVTNGTHWFITQRNFYSPQPITTDNTFVSGNCDVVIGIVNNTVYDPL >UniRef50_P05135(208-1019:1163) Spike protein S2 n=1237 Tax=Avian coronavirus RepID=SPIKE_IBV6 E=1e-104 s/c=0.47 id=28% cov=72% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -----------------------------NGTAQDVILCDGSPTGLLACQYNTGNFSDGFYPFTNSSlVKEKFIVYRESSVNT----------------- -----TLELTNFTFSNVSNATPNTGGVQTIQL---------YQTITA---------QSGYYNLNFSFLSSFIYKASDYMYGSYHPSCKFRLETINNGLW- ---------FNSLSVSLGYGPIQGGCKQSvfanRATCCYAYSYNGPSLCKGVYRGELTksfecGLLVFVTKTDGSRIQTRNEPFTltqhnynNITLDRCV EYNIYGRVGQGFITNVTNYAINYNYLADGGMAILD------TSGAIDIF-VVQGEYGLNYYKVNPCEDV---------NQQFVVSGGKLVGILTSRNETG SQPLENQFYIKIINGTRRSRRSITgnvtnCPYVTYGKFCIK--PDGSISTIVPKELEHFVAPLLNVTEnVLIPDSFNLTVTDEYIQTRMDKVQINCLQYV CGNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMELLYFYSSTKpSGFNTPVLSNVstGEFNISLLLTPPSSASGRSFIEDLLFTSVESVGLPTDDAYKK CTAGplGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFG----GITSAGAIPFATQLQARINHLGITQSLLFKNQEKIAASFNKAIGHMQEG FRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQS IRYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVNPAnasqyAIVPAngRGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANY VSVNKTV---- >UniRef50_B3FHU5(183-1047:1226) Spike n=17 Tax=Coronavirinae RepID=B3FHU5_CVTKE E=1e-102 s/c=0.43 id=31% cov=71% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -------------------------------------------INKLRCAYQQFNFSTGFYDIDTF--VPVTS-----NITYL-PYPDLKDNTGQEVCDF YVALKGDHVIYNQSCV-DSKYPFFKLKCNNTYSWDNDKLC---ILGSEIYVPG------YNVYTNTQHSYAGTIPNYPTCSSKGLSLENI--YNNIGFNR FCVTKL-LTTRDISSITQYTCVYVVSVEGFDSYNQGIVYSYV---GVNFD-FGTAMYSVK----------TAPMQFIYTEQCHKYNIYNIRGVGQILNVT GKDNTTLVDGGLVITSGSGLLAFRNNgSLFSVQPCRTVSTQAVIV----NGSFVGLFVPASC------WLADQ-------FNLGNHTEYVD--GGCLISN KTISRKRRSTNAVYTGECTGlFAAMGTScIYSNGTVLNRTlpqpsvqtsvQPLLGVVANVSIPKELTLAVTTEYLQTRYQKVTIDCAKYVCGDSTRCRTL LQQYGSFCQSVNAILSGVNENEDNGLLQYAEAINTGYtlnfTGYNVSNLGGFDLSLVLPKNltlAQNQGRSTIEDLLFDKvVTLGVSEVDQNYDKCIASr ggsfTNLADLTCAQFYNGVMVLPGVVDPGLMAVYTGSLIGGMALGGITAAAS----IPFATQIQARVNYLALTQSVLLDNQNLIANSFNKALKGIQsald tvsqgfvevaRGFESVTVALNKVQDVVNTHSDILNKLMAQLSVNFGAVSSSLNEIYLKLDQINADAQVDRLITGRLTALSTYVASLQLAAYKADQSRRLA LQKVEECVKSQSMRYGFCGNGSHVLTIPQSAPNGIFFIHYTYQPTSYVTIEAVPGLCVttpSGKyGVMPKtgSGIIFRQNDTFFVTSTQLYEPKLLSYSE VVNLTSCE-------------- >UniRef50_B2BW33(451-1322:1472) Spike protein n=1 Tax=Beluga Whale coronavirus SW1 RepID=B2BW33_9GAMC E=1e-100 s/c=0.42 id=30% cov=73% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -------------FISTLNYTTALVTFD-KGNVRSVIDCnSEKPFDRLRCDLQTDVVSDGFYPV-NIKTNEAKENTTFIDVPATLAnlTLEVFVSSPEQS PAC--VIKSYKCV-DTRYFYISDYSYSCAE-NGI-PNDAAGAAYCRGVLDQINNYGVRGMDFKGKCPFAGSKVNSGL--------------TFDKICFGV YEQgCQSDKACRFGFYFDNVQFSQYG------NKLYYKP---------QDLGFIDYQFGTLFKNSL----------VQSNIIQEGCHDYDIYGYKGTGVV KPFSDysYLQTGGLIMLDSGGFPSLFR--YNFALYEVTQC-----------TREVAQLAVASNNAIGYYLPKQVTIDGVNASTSCNTTGAfKYCYYDDVI H--VGRDVSNVTINVCNPslmMENSHC---INIQGNFMVNEPAITFNstqYQPLLGVSgDVQLPRTLMLHTTTEFIQTHSPKIVIDCTKYVCGSSERCRR ILVKYGGFCESIMRLLNGVNMADDVSVTDFLdnfnsfdnISVSLQNLNASFGQFEGYGFQKFLPksfdfDGSDPRdARSTIEDILFDKVTTVGLGTVDAd YDKCTKGLSVADLVCAQYYNGIMVLPGVADAEKMAMYTGALVGGMVLG----GITSAAAIPFATQIQARVNYLALTQNAIQENQKIIVQQFNKAIdsmts afQSVNEGFSAVSSAITEVQNAVNAQSQALTKLLGQLNYNFGATTSSIKELYERLAKLEADVQVDRLINGRLTALSAFVAARQVEAAKVASQRVLAAEKI NECVKSTSNRYGFCGNGAHIISFPQNAPNGMLFVHFSLVPNETITVKGIIGLCLNNSiGIVPAKdrGMFIQcsngtycpefensfneskNGNVTFpfaIT SREQYNPRQITTGDIQMLTSCN-------------- >UniRef50_A3EXG6(34-1139:1274) Spike protein S2 n=4 Tax=Rousettus bat coronavirus HKU9 RepID=SPIKE_BCHK9 E=0 s/c=0.97 id=36% cov=95% -----------NYTSIKAKVSNVLLPDPYIAYSGQTLRQNLFMADMSNTILYPVTPPANganggfiyntSIIPVSAGLFvntwmYRQPASSRAYcqepFG VAFGDTFENDriailimapdnlgSWSAVAPRNQTNIYLLVCsNATLCINPGF--NRWGPAGSFIAPDAlvdhsnscfVNNTFSVNISTSRISLAFLFK-- DGDLLIYHsGWLPTsNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQSIVRSNAidkgdgmctnfdVNLHVAHLINRDLLVSYFNNGSVANAADCADSAA EELYCVTGSFDPPTGVYPLSRYRAQVAGFVRVTQRGSYCTPPYSVLQDPPQPVV--WRRYMLYDCVFDFTVVVDSLPTHQ-LQCYGVSPRRLASMCYGSV TLDVMRINETHLNNLFNRVPDTFSLYNYALPDNFYGCLHAFYLNS--TAPYAVANRF---PIKPGGRQSNSAFID------TVINAAHYSPFSYV----- -------YGLAVITLKPAAGSKLVCPVANDTVVITDRCVQYNLYGYTGTGVLSKNTSLVIPDGKVFTASSTGTI-IGVSINSTTYSIMPCVTVPVSV--- GYHPNFERALLFNGLSCSQRSRAV-TEPVSVLWSASATAQDA--FDTPSGCVVNVELRNTTIvnTCAMPIGNSLC--FIN-GSIATANADSLPRlqlvNY DPLYDNSTatpmtpvywVKVPTNFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDSALLslvkELSINTRDEVT TFSFD--GDYNFTGLMgclgPNCGATTYRSAFSDLLYDKVRITDPGFMQSYQKCIDsqwGGSIRDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVAS SGYTFGITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSIALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSR LEGLAANAEVDRLINGRMMVLNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFIHYAYTPTEYAFVQTSAGLCH NGTGYAPRQGMFVlpNNTNMWHFTTMQFYNPVNISASNTQVLTSCSVNYTSVNYTVLEP- >UniRef50_Q02385(30-1234:1376) Spike protein S2 n=160 Tax=Coronavirinae RepID=SPIKE_CVMJC E=0 s/c=0.87 id=33% cov=96% -----NNASAPSISTEAvdvSKGLGTYYvLDRVYLNATLLLT-GYYPVDGSNyrnlaLTGTNTLSltwFKPPFLSeFNDGIFAKVqnlktntpTGATSYF PTIVIGSLFGNTSYTVVLEPYNNIIMASVCTYTICQLPYTPckpnTNGNRVIGFWhtdvkppICLLKRNFTFNvNAPWLYFHFYQQ-----GGTFYAYYA DKPSATTFLFSVYIGdILTQYFVLPFICTPTAGSTLLPL-------YWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGY TVQPVGVVYrRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLL-RYVQAESLSCNNIDASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSG FLQTANYKIDTAATSCQLYYslpkNNVTINNYNPSSWnRRYGFNDAGVFGKSKHDVAYaqqcfivRPSYCPCAQPDivsacTSQTKPMSAYCPTgtihre cslwngphlrsarvgsgtytcectckpnpfdtydlrcgqiktivnvgdHCEGLGVledkcgnsDPHKGCSCAHDSFIGwshdtclvndhsqifanillng inSGTTCSTDlqlPNTEVATGVCVRYDLYGITGQGVFKEVkADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRN INCSYVFT----------NNISREENPLNYFDSYLGCVVNADNrpDEALPNCDLRMGAGLCVDYSksrrarrsvSTGYRLTTFEpympMLVNDSVQSVGG LYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASaLMQGVTISSRLPDgisgpIDDINF SPLLGcigstcaedgnGPSAMRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG ----VPFSLNVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEILTRLDRVEAKA QIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGdRGLAP KAGYFVQDNGEWKFTGSNYYYPEPITDKNSVVMISCAV------------- >UniRef50_A3EXD0(236-1223:1352) Spike protein S2 n=12 Tax=root RepID=SPIKE_BCHK5 E=0 s/c=0.83 id=37% cov=78% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ----------AAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYESFEVETGVYSVSSFEASPRGEFIE-QATTQECDFTPMLTGTP-PPIYN FKRLVFTNCNYNLTKLL-SLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPTCrvlaTVPQNLTTITKPSNY AYLTECYKTSAYGKNYLYNAPgaYTPCLSLASRGFSTKYQSHSD-GELTTTGYIYPVTGNLQMAFIISVQYGTdtnsVCPMqalrnDTSIEDKLDVCVEY SLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYH-SDNGNYYCVRPCVSVPVSVIYD--KASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTP GP-LQTTVGCAMGFINSSmVVDECQLPLGQSLCAIPPTTSSRVRRATSGASDVFQIATLNFTspltlapinstgfvVAVPTNFTFGVTQEFIETTIQKIT VDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHGANLRQDESIANLFSSIKTQNTQPLQAGLnGDFNLTMLqIPQvtTGERKYRSTIEDLLFNKVTIADP GYMQGYDECMqqGPQSARDLICAQYVAGYKVLPPLYDPYMEAAYTSSLLGSIAGASWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQ ALGAMQTGFTTTNLAFNKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRLTSLNAFVAQQLVRTEAAARSAQLAQDKV NECVKSQSKRNGFCGTGTHIVSFAINAPNGLYFFHVGYQPTSHVNATAAYGLCNTenpQKCIAPIDGYFVLNQTtstvadsdqQWYYTGSSFFHPEPITE ANS--------------------- >UniRef50_B6VDX8(237-1043:1192) Spike glycoprotein n=1 Tax=Thrush coronavirus HKU12-600 RepID=B6VDX8_9GAMC E=0 s/c=0.93 id=30% cov=70% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- --------------------------------------CDKDLYDHLRCQQSSFSLTDGFYSTAKYTTnqQRKTIFVTLPKhtytetisiLPNISNPAYP DGSTNGPALGWW--------VGTMNVLFNNSQT----------------LC---VNSSFFMVNITFKCWLKPHPTK---------PSDEYKCIGGLPTAQ VKLPDWPFAPYYSFSQLCL--SSTYQVGYSTFYFQYWNQGTNKRWeskPLFYYTYQTGTQYTYVTKPVISFT--------------DVSELSLYECVDYN IYGVIGSGIIQPSNISYLNGLYYTSSA-GQLLAFKNSTTFQIYTVQPCD-------------SPGQVIVYNN----SFIGAITASNQTILNFKSRIATPT FYYHTNATSVQG----NCNTAPLQFSSIGICPD----GSIMQVNTTVDTLPATTIITSGNITIPLNFTISIQAEYLQIQAQHTVVDCQTYVCNGNAKCLQ LLQQYSTACSNIEQSLTMSARLDNAETLAMVQTSTQGYHLSKIEQHDNqYNLTAILPN--KQGGRSAIEDLLFDKVVTNGLGTVDqDYKECTKGVSLADL ACAQYYSGIMVLPGVVDAEKMAMYTASLTGGMFFGGLTA----ASSIPFSVAVQARLNYVALQTDVLQKNQQILANSFNQAMGNITLAFSSVNDalqqts eviqtvanALNKIQDVVNKQGSALNHLTLQLQNNFDAISHSIADIYARLDEVEANQQVDRLITGRLAALNAYVTQVLTQISQLKAQRQLAQEKINECVKS QSDRFGFCGNGSHLFSITQAAPNGILFLHTVLTPTDRVQVNAIAGICVSDSAFVLREPnlAFFQHDGKWLISPRRLFQPRPATVADFVQIQSCEVTF--- YNTTYDEL >UniRef50_Q7TE91(477-1333:1481) S protein n=104 Tax=Coronavirinae RepID=Q7TE91_9ALPC E=0 s/c=0.83 id=30% cov=74% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -----FAISAVEYYgfwtIAYTKYTDVMV--DVNGTsITRLFYC-DSPLNRIKCQQMKHELPDGFYSANSLvKKNLPKTFVTTPQFYNGMNVtlHVILND TSaGTKVVGFERYELEQ---------IADILFEIPQNQDGEVKNVTNFCVQTRQLAFFFKYTSLQGLYSISNTVWLKNY-----------DCPFSPQQFN NYLQFETLCFDTNPSVAGCKWA--VMHSPIWNTQFATITVTYKEGA----------------------QITTMPKPQLGFRDVSFKVEGECTDYNIYGFQ GTGIIRKTESKLVAG-LFYTSASGDLLAFKNSTTGEIFTVVPCDLTAQAAVI-----NDEIVGAITSINQTDLFEFVnHTHTVRRVRRAVQTGTTITAYS MPQFYYITKWNNDTSENCTSVITYSsfaICntgeIKFVNVTK-VEAVEDGIGTVKPISTGN--ITIPKNFTVAVQAEYIQIQVKPVVVDCAKYVCNGNNH CNRLLTQYTSACQNIENALNLGARLESLMLnemitvsdssLELATIEKFNTTVVGGEKLGGIYFDGLKDVlPAQPGGRSAIEDLLFNKVVTSGLGTVDeD YKKCSAGTDIADLVCAQYYNGVMVLPGVVDDNKMAMYTASLIGGMAMGSIT----SAVAIPFAMQVQARLNYVALQTDVLQENQKILANAFNNAMGNITl algqvsdaistvsEGFNTMASALTKIQSVVNQQGNALSQLTQQLQNNFQAISSSIAEIYNRLEKVEADAQVDRLITGRLAALNAYVAQTLTQYTEVKASR QLAMEKVNECVKSQSDRYGFCGNGTHLFSLANAAPDGLLFLHTVLLPTEWEEVTAWSGICVNDTyAYVLKDfkSSIFSYSGTYMITPRNMFQPRKPQMSD FVQITSCEV------------- >UniRef50_A8JP00(172-992:1128) Spike glycoprotein n=3 Tax=Rhinolophus bat coronavirus HKU2 RepID=A8JP00_9ALPC E=0 s/c=0.83 id=31% cov=68% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------DQSGAVTRYSYCADGFVNGLQCKLRLFDIPPGVY--SNSEVEYPVALYTVVHNMSVCPqrPESYCGSNYCP-- --FKRVVFSNCVVNYTSW----------------------------------------------TSGLLRDYQHlVLPNGkfnpFTEC-NGLNRIVDDCV TGFVLRVGR-------GTAVNRTVITP-----------------YLKPNECFGWSWNDYQDSIYDWwiaDFVSTGAFVCEKNPDAP-RTGVCITYTIEKV TFQGVLYESNFTFAQYYNVLYFGSQ-LKYVRIL--GKVYEVAPCFEASYDVLF---RSSSSFGLLYRSFDCNQlrISASRFAERLLPSHNGTATA----- ----LGCLFNATYapNDTMVNCTNPLGDGFCADlLSNVVVRRMTFEKHDTTYVAPVTIERFTELPLDHQLVLTEQFLQTTMPKFSISCETYICDVSKACK NLLFRYGGFCQKIEADIRGAGVLLDSDVSGLYSTIAAKT-SSIMPTTDRFNVSQfFLPKVQSTSerfeSRSVIEDLLFSKIETTGPGFYGDYYNCKKN-A IQDLTCAQYHNGILVIPPVMDAETLGMY-----GGIAAASLTLGIfgGQAGITTWSLAMAGRLNALGVVQNALVDDVNKLANGFNQLTASVSKLALTTSS ALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADVQMDRLINGRMNVLQLFVTNYKLKIAELRNTHRYVQSLINECVYAQSLRNGFC GQGLHVLSLMQNAPSGIMFFHYSLIPNNTIIVKTTPGLCESDelgsKCIVAKDGVLVSaNLSYWQWSPRNLYKPENLTFAN------------------- --- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 996 * * * * * 1004 * * * * * 1 0 * * * * * * 1170 0 0 C 2 * 0 * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1170 0 0 G 3 * * * * * 996 * * * * * * * * * * 1004 * * * 3 0 * * * * * * 1170 0 0 T 4 * * * * * * * * * * * * * * * * 0 * * * 4 0 * * * * * * 1170 0 0 L 5 * * * * 1004 * * * * 996 * * * * * * * * * * 5 0 * * * * * * 1170 0 0 S 6 * * 1726 * * * * * * * * 1337 * * * 1729 * * * * 6 0 * * * * * * 1690 0 0 N 7 * * 1726 * * * * * * * * 519 * * * * * * * * 7 0 * * * * * * 1690 0 0 K 8 1337 * * * * * * * 1729 * * * * * * * * 1726 * * 8 0 * * * * * * 1690 0 0 S 9 * * * * * * * * * * * * * 1726 * 519 * * * * 9 0 * * * * * * 1690 0 0 P 10 518 * * * * * * * * * * * 1729 * * * * * * * 10 0 * * * * * * 1690 0 0 S 11 * * * * * * * * * * * * 518 * * 1729 * * * * 11 0 * * * * * * 1690 0 0 K 12 * * * * * * * * 2211 * * 1014 * * * 1793 * * * * 12 0 * * * * * * 2064 0 0 L 13 * * * * * * * 1793 * 2211 * * * * * * * * * 1014 13 0 * * * 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