HHsearch 1.5 NAME c8ztvM_ FAM FILE c8ztvM_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8ztvM_.a3m DATE Sat Mar 22 12:46:56 2025 LENG 116 match states, 116 columns in multiple alignment FILT 103 out of 112 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.4 EVD 0.4161 -0.2075 SEQ >ss_pred CCCCCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC CCCCCCCCCCCCCCCC >ss_conf 9212662698757213013540817999999999807795441335889999999999996253325899999999999850842230221799668735 5333232334334579 >Consensus aRIxxxxlxxxkxixxaLxxIxGIGxxxaxxIcxxxgixxxxxxxxLsxxqixxlxxxixxxxixxdLxxxxxxdIxrlxxIxsyRGxRHxxGLPVRGQR TrTNartxkkxxkxik >c8ztvM_ ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQR TKTNARTRKGPRKPIK >UniRef50_Q9G8U6(3-98:102) Ribosomal protein S13 n=1 Tax=Rhodomonas salina RepID=Q9G8U6_RHDSA E=3e-14 s/c=0.83 id=31% cov=82% -RIFEKFLNRKKLVFVALRSIFGLGSFQIRLLCNKCDIGSNCKVEHLSQGQVINICKKIdqNKLFVESQLKSIVKFDIKRLIMVNCFRGFFHK---KLRG ------------------ >UniRef50_Q6LXN1(11-146:149) 30S ribosomal protein S13P n=7 Tax=Methanococcus RepID=RS13_METMP E=2e-19 s/c=0.71 id=25% cov=98% -RISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEdpathgipswmfnrkkdvysgldKHLIETDLVLTVQEDIT NMKKIRCYKGIRHELRLPCRGQRTR--GSFRKGTSMGVK >UniRef50_A8J3J1(2-114:124) Mitochondrial ribosomal protein S13 n=1 Tax=Chlamydomonas reinhardtii RepID=A8J3J1_CHLRE E=6e-19 s/c=0.84 id=28% cov=97% AQIQRVALFPHATFHIALARVFGLGKSTSLAVSEACGISKDLKVKDVKDSYIQKVTAYIEaNFVTGDTLKRQVRENVLEEVAINSRRGVRHTLGLPVSSA QTRSNGVNARKLR---- >UniRef50_B5SQ48(14-114:116) Ribosomal protein S13 n=2 Tax=unclassified Blastocystis RepID=B5SQ48_9STRA E=8e-16 s/c=0.84 id=28% cov=85% ------------SLLFILNKIYGINTMQAKYILHSLGYNPSMKIKNLTPTNLKSFNMFLTKyYLINNDLHYQFENNKKQKILLNTYHGVRLKTKLPSHGQ NTHSNAHTAKK------ >UniRef50_B2XXA3(11-116:166) Ribosomal protein S13 n=2 Tax=Dictyosteliida RepID=B2XXA3_9MYCE E=6e-08 s/c=0.55 id=22% cov=89% -------LNKRKKVLFEIkKKIAGMGESMTKRLCSMCGFLPMTYVSKISTKGGLRLMRIYKSFKGLSDYSYYVyrkRFNQRRSKE-RAYRSQRFTKGYPV -SQRTRTNGKIASKK----- >UniRef50_Q8M0B4(24-130:130) Ribosomal protein S13 n=1 Tax=Amoebidium parasiticum RepID=Q8M0B4_AMOPA E=4e-09 s/c=0.58 id=29% cov=81% ------------------KKVYGIGEKEYATISVQLGLSSN-QGRGVTSYERSQIDTYIKRRMkftmlitpdfhtkpIEQNLRAAMNAKILTLQNIKTYK GIRHKKGLPVNGQRTKTNAISARRKR---- >UniRef50_Q3LW54(20-150:159) Ribosomal protein S18 n=1 Tax=Bigelowiella natans RepID=Q3LW54_BIGNA E=1e-13 s/c=0.59 id=28% cov=94% -RIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEEVVNIFGKssrkafpswlmnrradfltgdnlHVLSTVLDSALQEDIK RLVTIKNNKGLRHLSRLKTRGQHTKSNGRRGK------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 2577 0 0 R 2 * * * * * * * * * * * * * 4287 76 * * * * * 2 0 * * * * * * 4462 0 0 I 3 * * * * 6308 * * 505 * 3109 4565 * * * * * * 3004 * * 3 0 * * * * * * 4995 0 0 A 4 2499 5811 * * 2964 3856 5939 5686 * 1552 4145 6982 * 4070 * 4901 5675 4780 * 5811 4 0 * * * * * * 4999 0 0 G 5 * * 2965 4684 * 1359 * * 6425 * * 1888 * 4639 3831 4651 6479 * * * 5 0 * * * * * * 5040 0 0 I 6 6175 5734 * * 6123 * 6171 4956 2835 * 6372 6261 * * * 4985 1186 1886 * * 6 0 * * * * * * 5108 0 0 N 7 4330 * 1920 3184 5120 5799 5182 * 6345 6179 * 1707 6016 * 4858 3521 5567 * * 6489 7 0 * * * * * * 5198 0 0 I 8 * 6058 * * 2896 * * 1640 * 1300 * * * * * * * 3017 * * 8 0 * * * * * * 5305 0 0 P 9 * * 1855 5587 5282 * 6141 * 3052 * * 2637 2061 5380 5711 3712 6203 * * 6805 9 0 * * * * * * 5368 0 0 D 10 5376 * 2838 3252 * 1318 6616 * 3298 * * 3551 4806 * 5111 4180 6258 * * * 10 19 * 6273 * * * * 5368 0 0 H 11 4567 * 4103 4390 * 5487 3417 * 2357 6077 * 1719 * * 4508 3789 3238 * * * 11 0 * * * * 0 * 5359 0 1000 K 12 5282 * * 5070 6390 * * 6637 651 4141 * 5745 * 4430 3577 4950 6203 6383 6377 6609 12 0 * * * * * * 5368 0 0 H 13 4735 * * * * * 7192 6456 2301 3655 * 4070 2772 3830 2934 3137 3355 4523 * * 13 0 * * * * * * 5423 0 0 A 14 4422 5590 * * 5283 * * 1779 * 2114 5407 * * * * * * 1471 * * 14 0 * * * * * * 5430 0 0 V 15 3669 * * 3287 3842 5870 5283 4944 3456 3618 5921 6067 3922 4421 3521 6402 6470 2706 6715 3567 15 0 * * * * * * 5430 0 0 I 16 6168 6392 5436 * 2139 * 6004 2246 4892 5593 5902 4344 * 4500 4026 5396 5244 3619 * 2834 16 0 * * * * * * 5430 0 0 A 17 851 * * 3485 * 3131 * 5652 * 5116 * 5713 * * * 2694 * 5659 * * 17 0 * * * * * * 5429 0 0 L 18 * 6109 * * * * * 3994 * 209 5876 * * * * 6281 * 5184 * * 18 50 4885 * 0 * * * 5429 1573 0 T 19 3068 4834 6409 6386 * * * 7003 3470 4752 * 5656 7131 2558 3093 5091 1592 6404 * * 19 23 5955 * 0 * * * 5448 1095 0 S 20 3972 * 3288 4496 * 3903 5189 5733 1920 * 6419 4789 * 3753 4242 3034 6523 7131 * 3362 20 60 4626 * 0 * * * 5448 1900 0 I 21 * * * * 3271 * * 742 * 3574 4711 * * * * * 5680 2675 * * 21 0 * * * * * * 5475 0 0 Y 22 5520 * 6361 * 2410 6241 3978 * 2336 6266 * 5773 5279 * 3936 6384 4887 6366 * 1631 22 0 * * * * * * 5503 0 0 G 23 6239 * * * * 47 * * * * * * * * * 5721 * * * * 23 0 * * * * * * 5503 0 0 V 24 * * * * * * * 628 * 2640 5520 * * * * * * 2550 * * 24 0 * * * * * * 5503 0 0 G 25 * * * * * 199 * * 5803 * * 3754 * * * 4760 * * * * 25 0 * * * * * * 5503 0 0 K 26 * * * 3787 6333 * 4673 4260 2596 3918 6277 5029 2892 4439 2511 3845 5357 5555 6366 3943 26 0 * * * * * * 5503 0 0 T 27 3558 * * * 3688 6579 5483 4549 2647 6918 5026 * 6965 5011 2129 2746 3152 * * 4873 27 0 * * * * * * 5503 0 0 R 28 5898 * * 6378 3149 * 6215 4029 2783 3518 3275 5428 * 3407 4152 5162 2625 4436 * 4721 28 0 * * * * * * 5503 0 0 S 29 846 5524 * * * 6972 * 3920 * * * 5803 * * * 1845 5066 6672 * 6378 29 0 * * * * * * 5503 0 0 K 30 4829 6955 6672 4248 4926 * 4048 3258 2389 3826 * 3106 * 4725 3076 4851 3512 * * 4638 30 16 6480 * 2000 415 * * 5503 1000 0 A 31 2299 5884 * 4267 5313 6392 6784 3598 3108 4417 7322 5863 * 2659 3442 6052 4398 3999 * 4736 31 0 * * * * * * 5503 0 0 I 32 5344 * * * 6369 * * 928 * 2090 5977 * * * * * * 2419 * * 32 0 * * * * * * 5503 0 0 L 33 3836 1025 * 5102 * 5977 * 5853 * 2727 4067 * * * 5239 4779 5333 3685 * * 33 0 * * * * * * 5503 0 0 A 34 2905 6546 3528 3768 * * 5070 * 2153 4864 * 3888 6570 5863 2767 3172 * 5241 * 5199 34 0 * * * * * * 5503 0 0 A 35 4101 * 5631 5868 6052 7194 6546 3910 1793 4497 4836 5429 * 3289 2929 4074 * 3166 * 6672 35 0 * * * * * * 5503 0 0 A 36 2100 3659 * * 4364 * 6239 4391 * 1357 4613 * * * * 5174 3766 4451 * * 36 13 6824 * 4392 70 * * 5503 1000 0 G 37 5217 * 3584 4945 * 691 5642 * 4311 * * 3837 * 4891 6394 4844 * 6824 * 6918 37 14 6645 * 3700 115 * * 5503 1000 0 I 38 * * * * 3693 * * 1289 6126 1905 6713 6560 * * * * * 2512 * 4777 38 43 * 5088 * * * * 5503 0 0 A 39 5117 * 1542 * 6513 3996 2991 * * 4375 * 2811 4790 * 6675 3033 5550 * * 4377 39 26 * 5813 * * 0 * 5511 0 1702 E 40 7223 * 4806 3266 6356 4578 * 4616 3663 3473 6936 5226 1450 5424 5856 3460 6638 4691 * 6848 40 0 * * * * 0 * 5494 0 1498 D 41 * * 3143 4273 4607 5395 4526 * 3965 5224 5520 2173 6824 4167 3884 3312 3127 * 4682 7332 41 17 * 6378 * * * * 5503 0 0 V 42 2854 3743 * 5138 * 6693 * 3297 2413 3582 3468 * * 5954 3697 4550 3071 5938 * 6120 42 0 * * * * 0 * 5485 0 1000 K 43 * * * 5863 5508 * 5803 5986 1653 3984 * 5414 5051 4830 1793 6043 3135 7492 * 4883 43 0 * * * * * * 5503 0 0 I 44 2537 * * * 4358 4121 * 2548 5803 2971 3705 * 6043 * * * 4555 1980 * 5863 44 0 * * * * * * 5503 0 0 S 45 5686 6306 5246 6151 * 1386 3924 5724 2590 * * 3997 6965 5775 3902 3183 * 6843 * 5687 45 13 * 6824 * * * * 5503 0 0 E 46 4768 * 2251 2381 7078 6369 4758 * 3295 4296 5123 4159 * 3528 * 3954 4528 * * 3783 46 0 * * * * 0 * 5499 0 1000 L 47 * 5902 * * 4653 * * 3471 * 431 4765 * * * * 6043 * 4063 * * 47 0 * * * * * * 5503 0 0 S 48 4976 * 4149 4796 * 5669 * * 4014 6052 * 3133 4455 * * 1719 1663 * * * 48 34 7088 5977 4322 74 * * 5503 1000 0 E 49 4489 * 2203 2099 6241 5629 * 5804 3579 6636 * 3802 3523 4040 5917 4371 3993 * * 6310 49 11 6996 * 1585 585 0 * 5483 1000 1000 G 50 3450 * 3367 2014 4411 4476 5876 * 3419 6828 * 4033 4844 5404 6804 3556 4174 7023 5961 4058 50 0 * * * * * * 5517 0 0 Q 51 * * 4548 1658 * 5526 5690 6050 5025 5753 5961 5852 * 1410 * 7203 4923 5861 * 3874 51 0 * * * * * * 5517 0 0 I 52 6404 * 5824 5413 4773 4847 6226 2048 6583 1839 6482 5753 * 6261 5594 * 4935 2207 6564 7080 52 0 * * * * * * 5517 0 0 D 53 4110 * 2645 2416 5983 * 5341 4253 3917 3320 4807 3413 * 4870 6325 4747 3561 6864 * 5118 53 0 * * * * * * 5517 0 0 T 54 3087 * 5148 3662 * * 5743 5177 2087 4174 * 4831 * 4134 2950 2587 5192 5457 * * 54 35 5378 * 2742 234 * * 5517 1661 0 L 55 * * * * 5165 * * 1719 * 831 * * * * 5961 * * 3470 * * 55 15 6585 * 5585 30 * * 5517 1000 0 R 56 4305 5394 4759 3034 * 6661 * 4354 4151 4640 3880 3649 * 4274 2630 4340 2830 4043 * * 56 11 7058 * 1585 585 * * 5517 1000 0 D 57 3330 * 3229 2945 * 6281 6681 5743 2557 5876 5852 3221 * 4201 3496 3781 4060 6957 6908 5707 57 19 6259 * 1000 1000 * * 5517 1000 0 E 58 3092 * * 2975 3882 * 7255 2496 4395 3407 6369 6042 6585 6390 5056 5670 5531 2977 5743 3390 58 0 * * * * * * 5517 0 0 V 59 5136 6313 * * 4930 * * 1315 * 1651 6838 * 7026 5983 * * * 2719 * 5526 59 213 2867 * 3812 107 * * 5517 3730 0 A 60 3584 * 3922 2263 * 4992 * 6259 3688 7512 * 2725 6784 4041 4634 2485 3741 * * * 60 304 2394 * 3199 166 * * 5517 4052 0 K 61 6018 * 4370 3348 * 5006 * 5983 2395 * * 1962 6259 4585 4156 4102 2851 * * 4769 61 365 2245 6313 3811 107 * * 5517 4114 0 F 62 * * 6943 6408 2557 * 1897 4830 * 2900 3841 4211 6413 5339 6342 6022 6857 * 6768 2583 62 81 4200 * 4452 67 0 * 5526 2693 1000 V 63 6564 * 5253 6858 3652 * * 3838 2548 1741 4940 6583 6259 5575 5853 * 4299 2491 6402 * 63 118 3669 * 2291 330 * * 5517 3060 0 V 64 * * * * 5248 4625 6588 1458 * 3028 6732 * 5335 5810 * 5447 3145 2153 * 5422 64 0 * * * * * * 5541 0 0 E 65 4922 * 4493 1397 * 2117 4557 * 6558 4625 * 4627 * * 6514 3102 4531 7057 * * 65 17 6418 * 2000 415 * * 5541 1000 0 G 66 5190 * 4564 5881 * 2445 5579 6275 6975 5432 6255 2537 5567 4281 5810 2345 2964 7087 4717 5743 66 25 5875 * 3000 193 * * 5541 1506 0 D 67 6978 * 1203 2402 * 5832 5602 * 5158 5835 4349 3472 6040 6147 4779 5422 5353 4960 * * 67 90 4494 5969 1732 517 * * 5541 2119 0 L 68 5152 * * * 4376 * * 6579 5425 368 6090 * * * * * * 3916 * 4870 68 0 * * * * 0 * 5483 0 1000 R 69 5601 * 3244 3720 * * 4558 4939 2170 5340 5958 3589 * 5600 1777 4896 7087 5407 * * 69 0 * * * * * * 5541 0 0 R 70 3965 * 4660 5278 5082 6275 * 4568 2969 4214 4713 4647 * 4672 1691 4123 4396 * 7079 3940 70 11 7057 * 3907 100 * * 5541 1000 0 E 71 3804 6801 4541 3104 3763 6362 * 3147 2636 6969 * 4913 * 3116 4292 5030 3851 5195 * 3926 71 0 * * * * * * 5541 0 0 I 72 6905 * 5810 4509 4739 * * 2562 3210 2819 4132 4405 * 4404 4964 * 5278 2004 * 6098 72 59 4636 * 3302 154 * * 5541 1995 0 S 73 4937 * * 4699 5969 5718 6040 5186 3068 5960 4954 3634 * 2781 1742 3764 3967 6321 * 6873 73 0 * * * * * * 5541 0 0 M 74 3409 * 2904 2184 3559 6648 6976 5286 4813 4121 3519 3879 * 4026 5140 3980 7118 7503 * 6677 74 0 * * * * * * 5541 0 0 S 75 4834 6050 1348 4617 * * * 6384 5315 5644 5276 1527 * 5092 4974 5300 * * * * 75 0 * * * * * * 5541 0 0 I 76 * * * * 5126 * * 571 4286 3133 * 5743 * 5515 * * * 3438 * * 76 0 * * * * * * 5541 0 0 K 77 5025 * 5256 2339 6558 6801 * * 1873 4777 5743 2573 * 3393 3736 4570 5849 * * * 77 0 * * * * * * 5541 0 0 R 78 * * * 4230 4858 * 5195 7087 3100 4216 5602 5450 * 5843 762 6321 5109 6050 * * 78 11 7057 * 2000 415 * * 5541 1000 0 L 79 6275 * 6483 4207 4649 5276 * 4549 3383 864 3252 5743 * 6814 * 5515 * * * 6189 79 0 * * * * * * 5541 0 0 M 80 6255 6253 6558 * * * * 2196 1440 5136 4794 6861 * 5184 3030 * * 2826 * 6336 80 0 * * * * * * 5541 0 0 D 81 4211 * 2744 3414 6559 5553 * * 1904 5043 3964 3850 * 4285 3889 4395 3984 6590 * * 81 58 * 4665 * * * * 5542 0 0 L 82 * * * * 6222 * * 546 * 3889 3656 5077 * * * 4547 4989 4293 * * 82 0 * * * * 0 * 5441 0 1404 G 83 * * 5224 * * 2334 5520 * 2044 * 6352 3010 * 4590 1964 3782 * * 8029 * 83 17 6414 * 1000 1000 * * 5543 1000 0 C 84 3294 2044 * 6289 * * 6110 6730 * * 6418 4562 * 6414 5428 1382 2888 6486 * * 84 0 * * * * * * 5543 0 0 Y 85 * * * 6421 6154 * 4248 5385 6418 4318 * 5003 * * 4821 6643 * 5470 3875 581 85 0 * * * * * * 5543 0 0 R 86 6514 * * * * * 5860 * 2397 6414 * * * 6275 505 5894 5979 5642 * * 86 0 * * * * * * 5543 0 0 G 87 6482 6412 * * * 175 * * * 6108 * 5482 * * * 4205 * * * * 87 0 * * * * * * 5544 0 0 L 88 * 5187 * * 3432 * * 2279 4719 2266 4423 * * 5530 3233 4596 6326 2998 8028 3824 88 0 * * * * * * 5544 0 0 R 89 * * * * 6149 * * * * * * * * * 20 * * * * * 89 0 * * * * * * 5544 0 0 H 90 * * * * 4335 * 287 5902 * 4595 * 7713 * 6767 5881 * * 5358 * 5827 90 0 * * * * * * 5544 0 0 R 91 2698 * 6482 3460 6347 6416 4700 3464 2543 5289 5112 5530 * 5422 3144 4043 3580 4725 * 5350 91 20 * 6149 * * * * 5544 0 0 R 92 4626 6092 5087 6353 4828 * 5192 * 2545 2486 3584 5095 * 3767 2830 5190 4940 5284 4458 4926 92 0 * * * * * 0 5532 0 1000 G 93 5592 * * * 6037 453 4864 * 4324 * * 4036 * * 4238 4816 * * * * 93 0 * * * * * 0 5532 0 1000 L 94 * * * * 6483 * 6228 * 5955 336 6454 * * 4329 * 6349 * * * 3413 94 0 * * * * 0 * 5536 0 1000 P 95 * * * * * * * * 2059 * * * 484 * 4467 * * * * * 95 0 * * * * * * 5541 0 0 V 96 6041 3247 * * * * * 7653 * 3827 * * * * * 4866 6160 404 * * 96 33 * 5487 * * * * 5541 0 0 R 97 * * * * * * 3960 * 5153 * * 4154 * * 278 5238 * * * * 97 31 * 5567 * * 0 * 5478 0 1000 G 98 * * * * * 72 * * * * * * * * * 4362 * * * * 98 0 * * * * 0 * 5485 0 1000 Q 99 5392 * * * * * * * * * * * * 35 * * * * * * 99 0 * * * * * * 5515 0 0 R 100 * 6348 * * * 6776 3336 * 4834 * * 4455 * 5392 388 * * 6543 * * 100 0 * * * * * * 5515 0 0 T 101 * * * * * * * * * 6258 * 5902 * * * 5061 110 6211 * * 101 0 * * * * * * 5515 0 0 K 102 * 6432 * * * * 2078 * 1732 * * * * 5025 1406 5759 * 6768 6069 * 102 12 * 6918 * * * * 5515 0 0 T 103 6641 * * * * 6134 * * 6536 * * 3907 * * * 1498 877 * * * 103 0 * * * * * 0 5513 0 1000 N 104 * * * * * * 6239 * * * * 438 * 4795 * 6419 2314 * * * 104 14 * 6701 * * 0 * 5494 0 1000 A 105 833 6631 * * 5256 1570 6235 6175 * * * 5070 * * * 6856 * * * * 105 0 * * * * * 0 5489 0 1000 R 106 4999 * * * * * 5137 5031 1768 * * 6393 * * 888 6162 6452 5310 * 6246 106 0 * * * * 0 * 5478 0 1000 T 107 * * * * 5567 * 6112 5354 4668 * * 3742 * * 2911 3949 694 6647 * * 107 47 6205 5755 0 * * * 5452 1000 0 R 108 1517 4848 * * * 2095 * 5483 5633 * * * * 5466 2001 4770 6322 5814 * * 108 0 * * * * * 0 5380 0 1000 K 109 * * * * * 6021 * * 818 * * * * * 1384 4860 * * * * 109 0 * * * * * 0 5134 0 1000 G 110 * * * * * 1742 * * 961 * * * * 5207 3084 4569 * * * * 110 0 * * * * 0 * 4694 0 1000 P 111 * * * * 4739 * 5261 3958 1939 1592 * * 2381 * 5475 5427 5155 6171 * * 111 33 5472 * 0 * * * 4673 1000 0 R 112 3413 * * * * * * * 1957 * * 2123 * * 1905 2902 * 5792 * * 112 0 * * * * * * 4502 0 0 K 113 * * * * 4693 * * * 553 * 4598 3080 * 4902 * * * 3526 * * 113 0 * * * * * * 4281 0 0 P 114 2443 * * * * 3839 * * 4021 * * 3865 2616 * * * 1570 3107 * * 114 0 * * * * * * 3677 0 0 I 115 * * * * * * * 520 * * * * * * * * * 1725 * * 115 0 * * * * * * 3499 0 0 K 116 * * * * * * * * 0 * * * * * * * * * * * 116 0 * * 0 * * * 2709 0 0 //