HHsearch 1.5 NAME c8yzeB_ FAM FILE c8yzeB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8yzeB_.a3m DATE Sat Jan 25 09:53:14 2025 LENG 1034 match states, 1034 columns in multiple alignment FILT 23 out of 25 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.3192 -9.8242 SEQ >ss_pred CCEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCEEEEEEEECCCEEEEE EEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHEECCCEEEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCEEEE EEECCCCHHHHHHHHHCCCCCCCCEEECCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCCCCCCCCHHC CCCEEEEEEEEEEEEECCCEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC EEEECCCCCCCCCEECCEEEEEEEEECEECCCCCCCCCCCCCCEEECCCEEEEEEEEEEEEEEEEECCCEEECCEEEEEECCCCEEEEECCCCCCEEEEE CCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEECCCCCCEEECCCCCCEEEEEECCCCC CCCCCCEEEEEEEEECCCEEEEEEEEEEEEECCCEEEEECEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC CCCHHHCCCCCCCCCCHHHHHHHCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHCHHHHCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCEEEECCCEEEEECCEEEECCCCCCCCCCCCCCCEEEEEEC EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCC >ss_conf 9204675202123321024433744454543422100220112222100577577744462012442140587576512346624899996042058777 5200010489987531146641699996506775354304507817999846987046899834034110065433424202212069999715752787 8852754155540001165688864213651563013689836666556542001466677621025678875104731334422320035555361000 3622310233134431341001214766300013445786654313430034566543101323577775146686420003432142221011357751 1220236510021111114788874000046556622354332000140266886006889999810110642603775126632444215675069995 2787753799727666520011100222101332013321111024441256654543430342221467521123322202134553201244224543 5555211520047845620578887899864362598502045189889999999886555889999998877755889999876432012444566676 2212101687766642034553202034522364156678767436679888877523332200000024178899986320110155777648999999 9999988998888899999999999863489999999998631012578899999988777776367787766799999999999988999999999999 9998874050220453447558999715899808999985233646999986567761834564075178778878972100015407744446998412 0389962411066447776686888998850379 >Consensus xxxxxxxxxxxxxxxxxxxxxxpxxxxxxxxxxxxxxlxxxxxxxxxxxxxxxxxxxxxgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vcxxxxcxxpxxxxxxxxxxxxxxxxxxxxxxxxxxxfxfxxxxxxxxxxxxxxxxxxxxxxlxxgxxxxxxxxxxxxxvxxlxxxxxLlxydxNGtItx avdCdxdplsxLkCqxxSFxvsdGFYsxsxxxvxxxxxxvxxpxxxxxcxxxxxxxxxxxxxxxxxxrxxxsNcvxnxsslxsxxxxxxxxcxnvxpsxl xxLCxssvtxdxFxixxxxxxxlqpgxtgxixxxNyklxxxxxscxlaxxxxxlxSkxxxnysxxxxxxxxsxxgxxxxxixxxiYsxxxxxxsxxGxxc xxxxxxxxxxxxxxxgxxxyxtxVxgxxixxxxxpvcgxxxxSnivtdxCxxYnIyGxtGxGvixxxnxxxxxxxxxxxxxxgxllxfkxxxtgxxyxVx PCxxxxxxxvxxxxxxsxxxaxlxxxixxsxxxxxxxxxxxxxxxxxxxtxxxxxxxxxgcxxxxxxxxxxxxCxxpxgxgxCxxxxxxxxxxxxxxxxx xxxxxxxxxxgxixIPxnFtlsvtxEyiQxxxxkvsIDCxxYVCxxnxxCxxLLxqYgsxCxxIexaLxxxxxlxdxxxxxxxssixxxxxxxxxxxxgx xNxsxiLpxxxxxxxRSxIEDLLFxKVxyNGImVLPgvvdxexmamYTasLxGgmaxggxTaaaxxaxaIPFaxavqxRlNylgltqxVLxeNQkiiAns FNxAigxIqegfxttxxALxKiQdVVNxqxxaLxxLxxQLxxnFgAISssixdIyxRLDxleAdaQVDRLItGRLxaLnayVtqxlxxxxevrxSrxLAx xKINECVKSQSxRxgFCGnGtHixSlxqxAPnGixFlHxxlvPtxxxxvxaxxGlCxxxxxxxxxxgxfvxxnxxxxiTxrxxyxPrxiTxxdxvxxxsC xvxyxnxxxxxlxxxxpxxxDfxxelxxxfxNxt >c8yzeB_ QCVNLITTTQSYTNSFTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHANPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNFVIK VCEFQFCNDPFLESGVYSSANNCTFEYVSQPFKNLREFVFKNIDGYFKIYSKHTSALEPLVDLPIGINITRFQTLLDYYVGYLQPRTFLLKYNENGTITD AVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNVTNLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKL NDLCFTNVYADSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRSFRKSKLKPFERDISTEIYQAGNKPCKGKGPNC YFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTKSNKKFLPFQQFGRDIVDTTDAVRDPQTLEILDIT PCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVSVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGVCASYQTQSQSIIAYTMSL GAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGG FNFSQILPDPSKPSKRSPIEDLLFNKVTFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQ FNSAIGKIQDSLFSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC DVVIGIVNNTVYDPLQLELDSFKEELDKYFKNHT >UniRef50_B3FHU5(77-1066:1226) Spike n=17 Tax=Coronavirinae RepID=B3FHU5_CVTKE E=1e-100 s/c=0.37 id=30% cov=73% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- --------INKLRCAYQQFNFSTGFYDIDTFVpVTSNITYLPYPDLKDntgqeVCDFYVALKGDHV--------------IYNQSCVDSKYPFFKLKCNN TYSWDNDKLCIlgSEIYVPGYNVYTNT----QHSYAGTIPNY--------PTC----SSKGLSLENIYNNIGFNRFCVTKLLT--TRDISSITQYTCVYV VSVEGFDSYNQGIVYSYVG-------------VNFDFGTAMYSV-KTAPMQFIYTEQCHKYNIYNIRGVGQILNVTgkdNTTLVDGGLVITSGSGLLAFR --NNGSLFSVQPCRTVSTQAVI---------------VNGSFVGLFVPASCWLADQFNLGNHTEYVDG--GCLISNKTISRkrrstnavyTGECTgLFAA MGTSCIYSNGTVLNRTLPQPSVQTSVQPLLGVVanVSIPKELTLAVTTEYLQTRYQKVTIDCAKYVCGDSTRCRTLLQQYGSFCQSVNAILSGVNENEDN GLLQYAEAINTGYTLNFTGYNvsnlGGFDLSLVLPKNLTLaqnQGRSTIEDLLFDKVVtlgvsevdqnydkciasrggsftnladltcaqfYNGVMVLPG VVDPGLMAVYTGSLIGGMALGGITAAAS----IPFATQIQARVNYLALTQSVLLDNQNLIANSFNKALKGIQSaldtvsqgfvevarGFESVTVALNKVQ DVVNTHSDILNKLMAQLSVNFGAVSSSLNEIYLKLDQINADAQVDRLITGRLTALSTYVASLQLAAYKADQSRRLALQKVEECVKSQSMRYGFCGNGSHV LTIPQSAPNGIFFIHYTYQPTSYVTIEAVPGLCVTtpsGKyGVMPKtgSGIIFRQNDTFFVTSTQLYEPKLLSYSEVVNLTSCEANYYNVSES-ETPFQP ALPNFDDEFNDIF---- >UniRef50_Q02385(68-1263:1376) Spike protein S2 n=160 Tax=Coronavirinae RepID=SPIKE_CVMJC E=0 s/c=0.77 id=35% cov=96% --------------------YYPvdGSNYRNLALTGTNTLSL------TWFKPPFLSEFNDGIFakvqnlktntptGATSYFPTIVIGSLFGNT--SYTV VLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNRVIGFWhtdVKPPICLLkrnftfnvnapwLYFHFYQQGGTFYaYYADKPSATTFLFSVYIGDILT QYfvlpfictptagSTLLPlYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPVGVVYrRVPNLPD-CKIEEWLT AKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNIDASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSCQLyyslpknnv tinnynpsSWNRRYgfndagvfGKSKHDVAYAQQCFIVRPSYCPCAQPDIVSAC-TSQTKPMSAYCPtgtihrecslwngphlrsarvgsgtyTCECTCK PNPFdtydlrcgqiKTIVNVGDHCEGLGVLEDKCGNsDPHKGCscahdsfiGWSHDTCLVNDHsqifanillnginsgttcstdlqlpntevatgvCVRY DLYGITGQGVFKEVKADYYnSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAYH--KEAPEPALLYRNINCSYVFTNNISREENPL-------- NYFDSYLGCVVNADNRPDEAlpNCDLRMGAGLCVDYSKSRRARRSVStgyrlttfepyMPMLVNDSVQSVGGlyEMQIPTNFTIGHHEEFIQIRAPKVTI DCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQgvtISSRLPDGISGpidDINFSPLLGcigstcaedgnGPSAMRGRSAIE DLLFDKVklsdvgfveaynnctggqevrdllcvqSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVLSEN QKMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEILTRLDRVEAKAQIDRLINGRLTALNAYISKQLSDSTLIK FSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGdRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDK NSVVMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQT >UniRef50_A3EXG6(32-1159:1274) Spike protein S2 n=4 Tax=Rousettus bat coronavirus HKU9 RepID=SPIKE_BCHK9 E=0 s/c=0.81 id=35% cov=94% -------------------VLLPDPYIAYSGQTLRQNLFMADMSNTILY---PVTPPANGANGGFIYNTSIIpvsaglfvntwmyrqpassraycqepFG VAFGDTFENDRIAILIMapdnlgswsavapRNQTNIYLLVCsNATLCINPGFnrwgpagsfiaPDALVDHSNSCfvnnTFSVNISTSRISLAFLFKDGDL LIYHsgwlptsnfehgFSRGSHPMTYFMSLPVGGNLPRaqfFQSIvrsnaidkgdgmctnfdVNLHVAHLINRDLLVSYFNNGSVANAADCADSAAEELY CVTGSFDPPTGVYPLSRYRAQVAG-FVRVTQRGSYCT-PPYSVLQDPPQPVVWRRYMLYDCVFDFTVVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVM RINETHLNNLFNRVPDTFSLYNYALPDNFYGCLHAF---YLNSTAP--YAVANRFpIKPGGRQSNSAFIDTVINAAHYSPFS------------------ -----YVYGLAVITLKPAAGSKLVCPVANDTVVITDRCVQYNLYGYTGTGVLSKNTSLVIPDGkVFTASSTGTIIGV--SINSTTYSIMPCVTVPVSVGY HPNF---ERALLFNGLSCSQRSRAVT-EPVSVLWSASATAQDAFDTPSGCVVNVELRNTTIvnTCAMPIGNSLCFINGSIATANADSLPRLQLVNYDPLY DNStatpmtpvywVKVPTNFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDSALLSLVKelSINTRDEVTTFSF DGDYNFTGLMgclgPNCGATTYRSAFSDLLYDKVritdpgfmqsyqkcidsqwggsirdllctqTYNGIAVLPPIVSPAMQALYTSLLVGAVASSGYTFG ITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSIALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAA NAEVDRLINGRMMVLNTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFIHYAYTPTEYAFVQTSAGLCHNGTGYA PRQGMFVlpNNTNMWHFTTMQFYNPVNISASNTQVLTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKFYKN-- >UniRef50_A3EXD0(237-1244:1352) Spike protein S2 n=12 Tax=root RepID=SPIKE_BCHK5 E=0 s/c=0.79 id=36% cov=82% ---------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------FYIYKLHPLTYLLNFDVEGYITK AVDCGYDDLAQLQCSYESFEVETGVYSVSSFEASPRGEFIE-QATTQECDFTPMLTG-TPPPIYNFKRLVFTNCNYNLTKLLSLFQVSEFSCHQVSPSSL ATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYKQDFSNPTCrVLATVPQNLTTiTKPSNYAYLTECYKTSAYGKNYLYNAPGAYTPCLS-LASRGF STKYQSHSDGELTTTGyiypVTGNLQMAFIISVQYGTDTNSVCPMQALRNDTSiedklDVCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYH SD-NGNYYCVRPCVSVPVSVIYD--KASNSHATLFGSVACSHVTTMMSQfSRMTKTNLLARTTPGPLQTTVGCAMGFINSSMVVdECQLPLGQSLCAIPP TTSSRVRRATsgasdvfqiatlnftspLTLAPINSTGFV---VAVPTNFTFGVTQEFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHG ANLRQDESIANLFSSIKTQnTQPLQAGLNGDFNLTMLqIPQVTTGErkYRSTIEDLLFNKVTIadpgymqgydecmqqgpqsardlicaqyvAGYKVLPP LYDPYMEAAYTSSLLGSIAGASWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAMQTGFTTTNLAFNKVQDAVNANAMALSKLA AELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRLTSLNAFVAQQLVRTEAAARSAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAINAPNGLYFF HVGYQPTSHVNATAAYGLCNTenpQKCIAPIDGYFVLNQTtstvadsdqQWYYTGSSFFHPEPITEANS-KYVSMDVKFENLTNRLPPPLLSNstDLDFK EELEEFFKN-- >UniRef50_Q7TE91(456-1356:1481) S protein n=104 Tax=Coronavirinae RepID=Q7TE91_9ALPC E=0 s/c=0.80 id=28% cov=75% ---------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------DVNGTsIT RLFYCDS-PLNRIKCQQMKHELPDGFYSANSLVKK---------NLPK--------TFVTTPQFYNGMNVTLHVILNDTSAGTKVVGFERYELEQIADI- ------------LFEIPQN-----QDGEVKNVTNF------CVQTRQLAFFFKYTSLQ--GLYSISNTVWLKNYDCPFSPQQFNN-YLQFETLCFDTNPS vagCKWavmhsPIWNTQFATIT-------VTYKEGAQITTMPKPQLGFRDVSFKVEGECTDYNIYGFQGTGIIRKTESKLVA-GLFYTSASGDLLAFKNS TTGEIFTVVPCDLTAQAAVINdeivGAITSINQTDLFEFVNHTHTVRRVRRAVQTGTTITAYSMPQFY------YITKWNNDTSENCTSVITYSSFAICN TGEIKFVNVTKVEAVEDGIgtvkPISTGNITIPKNFTVAVQAEYIQIQVKPVVVDCAKYVCNGNNHCNRLLTQYTSACQNIENALN-LGARLESLMLN-- EMITVSDSSLELATIEKFNTTVVGGEklggiyfdglkdvlPAQPGGRSAIEDLLFNKVVtsglgtvdedykkcsagtdiadlvcaqyYNGVMVLPGVVDD NKMAMYTASLIGGMAMGSIT----SAVAIPFAMQVQARLNYVALQTDVLQENQKILANAFNNAMGNITlalgqvsdaistvsEGFNTMASALTKIQSVVN QQGNALSQLTQQLQNNFQAISSSIAEIYNRLEKVEADAQVDRLITGRLAALNAYVAQTLTQYTEVKASRQLAMEKVNECVKSQSDRYGFCGNGTHLFSLA NAAPDGLLFLHTVLLPTEWEEVTAWSGICVNDtYAYVLKDfkSSIFSYSGTYMITPRNMFQPRKPQMSDFVQITSCEVTFLNTTYTTFEEIVIDYIDINK TisdmLEQYSPNFT >UniRef50_A8JP00(186-1016:1128) Spike glycoprotein n=3 Tax=Rhinolophus bat coronavirus HKU2 RepID=A8JP00_9ALPC E=0 s/c=0.78 id=29% cov=72% ---------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------DQSGAVTR YSYCADGFVNGLQCKLRLFDIPPGVYSNSEVEY-PVALYTVVHNMSVCPQRPESYCGSNYCP---FKRVVFSNCVVNYTSWtsglLRDYQHLVLPNGKFN PfTECNGL-------------------------------NRIVDDCVTGFVL-----RVGRGTAVNRTVITPYLKPNECfGWSWNDYQDSIYDWWIADFV STG---AFVCEKNPDAPRTGV----------------------------------CITYTIEKVTFQGVLYESNFTFAQYYNVLY--FGSQLKYVRIL-G KVYEVAPCFEASYDVLF---RSSSSFGLLYRSFDCNQlrISASRFAERLLPS-------HNGTATALGCLFNATYAPNDtmVNCTNPLGDGFCADLLSNV VVRR---MTFEKHDTTYVAPVTIerftELPLDHQLVLTEQFLQTTMPKFSISCETYICDVSKACKNLLFRYGGFCQKIEADIRGAGVLLDSDVSGLYSTI AAKTSSI-MPTTDRFNVSQfFLPKVQstseRFESRSVIEDLLFSKIEttgpgfygdyynckknaiqdltcaqyHNGILVIPPVMDAETLGMY-----GGI AAASLTLGIfgGQAGITTWSLAMAGRLNALGVVQNALVDDVNKLANGFNQLTASVSKLALTTSSALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKV ISQRLDKLEADVQMDRLINGRMNVLQLFVTNYKLKIAELRNTHRYVQSLINECVYAQSLRNGFCGQGLHVLSLMQNAPSGIMFFHYSLIPNNTIIVKTTP GLCESDelgsKCIVAKDGVLVSANLSyWQWSPRNLYKPENLTFAN-VIAVSRGANYTTLNRTFDIPELNNTFPIEEEFREYFQNMS >UniRef50_Q008X4(582-1076:1220) Putative spike protein n=1 Tax=White bream virus RepID=Q008X4_9NIDO E=2e-69 s/c=0.54 id=20% cov=31% ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------- -------------------------------------NCEEFICDKDPTCRTQFSSYCQTTQPILAALKDAFEKYNRSIADYTSTIRALTNTTQD----- -----LFASATPVRYRRGVE--------------VPLGYGHDLEQPSWVYDLGGTAIVPWIGTAVAvgklANRVASIEATLYQITQ-GVKQSIQSTNDKF dkITNILHTHLRPVTEGLVRTN--------------EQLNAFSKQVRDQFTMINTVTTELSAYVDQLQQvftvgafyQNQILQVIS-QLNSLQVYV---- ---DTLTSSFTDCISDLNQKILSPA-----CITTHQLLQINKPSDN----LGLKNVLTHYINGSAAtfYHLTSTKGVYKPLPKLF--NNTHFLAPTTAY- --NPVTGTCFFCGSNaCDKSVTVDCDYQPQPLQSTI--------------- >UniRef50_P05135(208-1040:1163) Spike protein S2 n=1237 Tax=Avian coronavirus RepID=SPIKE_IBV6 E=0 s/c=0.83 id=27% cov=76% ---------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------------LAYFVNGTAQD VILCDGSPTGLLACQYNTGNFSDGFYPfTNSSLVKEKFIVYRESSVNTTLELT------------NFTFSNVSNATPNTGGVQTIQLYQTI----TAQSG YYNLNFSFLSSFIYKASDYMYGSYHPSCKFRLETINNGLWFNSLSVSLGYGPIQGGCKQSVFANRATCCYAYSYNGPS---LCKGVYRGELTKSFECGL- ------------------LVFVTKTDGSRIQTRNEPFTLTQHNYNNITlDRCVEYNIYGRVGQGFITNVTNYAINYNYLadggmaILDTSGAIDIFvvQG EYGLNYYKVNPCEDVNQQFVVSGGK--------LVGILTSRNETGSQPLENQFYIKIINGTRRSRRSITGNVTNCPYVTYGKFCIKPDG-SISTIVPKEL EHFVAPLLNVTE---------NVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSVGQKEDMELLYFYSSTKPSG FNTPVLSNvstGEFNISLLLTPPSSASGRSFIEDLLFTSVesvglptddaykkctagplgflkdlacarEYNGLLVLPPIITAEMQTLYTSSLVASMAFG GIT----SAGAIPFATQLQARINHLGITQSLLFKNQEKIAASFNKAIGHMQEGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQL DSIQADAQVDRIITGRLSSLSVLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVN panasQYAIVPANgrGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVSVNKTVITTfVDNDDFDFDDELSKWWND-- >UniRef50_B2BW33(451-1343:1472) Spike protein n=1 Tax=Beluga Whale coronavirus SW1 RepID=B2BW33_9GAMC E=0 s/c=0.73 id=27% cov=76% ---------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------FISTLNYTTALVTFD-KGNVRS VIDCNSEkPFDRLRCDLQTDVVSDGFYPVNikTNEAKENTTFIDVPATLANLTLEVFVSSPEQSPACVIKSYKCVDTRYFYISDYSYSCAE-----NGIP NDAAGAAYCRGVLD------------QINNYG-VRGMDFKGKCPFAG-----------SKVNSGLTFDKICFGVYEQGCQSDKACRFGFYFDNVQFSQYG NKLYYKPQDLGFID-YQFGTLFKNSLVQ-----------------SNIIQEGCHDYDIYGYKGTGVVKPFSD--YSYLQTGGLIMLDSGGFPSLFRYNF- -----------ALYEVTQCTREVAQL--AVASNNAIGYYLPKQVTIDGVNASTSCNTTGAFKYCYyddvihVGRDVSNVTINVCNPslmMENSHC----I NIQGNFMVNEPAITFNSTQYqpllgVSGDVQLPRTLMLHTTTEFIQTHSPKIVIDCTKYVCGSSERCRRILVKYGGFCESIMRLLNGVNMADDVSVtdfL DNFNSFDNISVSLQnlnasFGQFEGYGFQKFLPKsfdfdgSDPRDARSTIEDILFDKVTtvglgtvdadydkctkglsvadlvcaqyYNGIMVLPGVADA EKMAMYTGALVGGMVLGGITSAA----AIPFATQIQARVNYLALTQNAIQENQKIIVQQFNKAIDSMTsafqsvnEGFSAVSSAITEVQNAVNAQSQALT KLLGQLNYNFGATTSSIKELYERLAKLEADVQVDRLINGRLTALSAFVAARQVEAAKVASQRVLAAEKINECVKSTSNRYGFCGNGAHIISFPQNAPNGM LFVHFSLVPNETITVKGIIGLCLNNSIGivpAKDRGMFIQCSNGTYcpefensfneskngnvtfpfaITSREQYNPRQITTGDIQMLTSCNSGYTHIEWS QLPLVAPPYDDFDKEFDKLYE--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * * * * * * 0 * * * * * * 1 0 * * * * * * 1000 0 0 C 2 * 0 * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 V 3 * * * * * * * * * * * * * * * * * 0 * * 3 0 * * * * * * 1000 0 0 N 4 * * * * * * * * * * * 0 * * * * * * * * 4 0 * * * * * * 1000 0 0 L 5 * * * * * * * * * 0 * * * * * * * * * * 5 0 * * * * * * 1000 0 0 I 6 * * * * * * * 0 * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 T 7 * * * * * * * * * * * * * * * * 0 * * * 7 0 * * * * * * 1000 0 0 T 8 * * * * * * * * * * * * * * * * 0 * * * 8 0 * * * * * * 1000 0 0 T 9 * * * * * * * * * * * * * * * * 0 * * * 9 0 * * * * * * 1000 0 0 Q 10 * * * * * * * * * * * * * 0 * * * * * * 10 0 * * * * * * 1000 0 0 S 11 * * * * * * * * * * * * * * * 0 * * * * 11 0 * * * * * * 1000 0 0 Y 12 * * * * * * * * * * * * * * * * * * * 0 12 0 * * * * * * 1000 0 0 T 13 * * * * * * * * * * * * * * * * 0 * * * 13 0 * * * * * * 1000 0 0 N 14 * * * * * * * * * * * 0 * * * * * * * * 14 0 * * * * * * 1000 0 0 S 15 * * * * * * * * * * * * * * * 0 * * * * 15 0 * * * * * * 1173 0 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54 4763 * 3807 107 * * 3779 1000 0 S 814 2755 * * 4150 * * * * 4507 * * * * 4699 3706 2084 1320 * * * 814 0 * * * * * * 3779 0 0 T 815 * * * * * * * 4568 * * 4586 * * * * * 989 1278 * * 815 0 * * * * * * 3779 0 0 P 816 2447 * * * * * * * * * * 1393 4490 * * 1558 4271 * * * 816 177 4682 3706 3807 107 * * 3779 1000 0 S 817 * * 2941 * * * 4628 2846 * 2966 * * * * 4487 1412 3549 4145 * * 817 62 4566 * 3807 107 * 0 3620 1000 1000 A 818 0 * * * * * * * * * * * * * * * * * * * 818 69 4413 * 3807 107 * 0 3620 1000 1000 L 819 * * * * 4047 * * 2879 * 316 * * * * * * * * * * 819 0 * * * * * 0 3620 0 1000 G 820 4413 * * * * 2765 * * 4758 * * 1634 * 2388 * 4053 2765 4368 * * 820 60 4606 * 3807 107 * 0 3620 1000 1000 K 821 3599 * * 4003 * * * * 344 * * * * 3890 * * * * * * 821 0 * * * * * 0 3620 0 1000 L 822 * * * * * * * 1026 * 3362 4053 * * * * * * 1509 * * 822 0 * * * * * 0 3620 0 1000 Q 823 * * * 3545 * * * * * * * * * 129 * * * * * * 823 0 * * * * * 0 3620 0 1000 D 824 2933 * 1080 4628 * * * * 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* 4097 3412 * * 847 0 * * * * * * 3779 0 0 S 848 * * * * * * * * * * * 3706 * * * 209 4097 * * * 848 0 * * * * * * 3779 0 0 S 849 2982 * * * * * 4682 * * * * 3690 * * * 898 2182 * * * 849 0 * * * * * * 3779 0 0 V 850 * * * * * * * * * * * 3716 * * * 522 * 2135 * * 850 0 * * * * * * 3779 0 0 L 851 * * * * 3716 * * 850 * 1774 * * * * * * 3706 * * * 851 0 * * * * * * 3779 0 0 N 852 3633 * 4747 3089 * * * * 2894 * * 2341 * 1954 * 3349 3706 * * * 852 0 * * * * * * 3779 0 0 D 853 4681 * 970 1417 * * * * * * * * * * * * * 3716 * * 853 0 * * * * * * 3779 0 0 I 854 * * * * * * * 281 * 2497 * * * * * * * * * * 854 0 * * * * * * 3779 0 0 L 855 * * * * 4150 * * * * 2101 * * * * * 2711 * * * 842 855 0 * * * * * * 3779 0 0 S 856 2559 * 4681 4097 * * * * * 4271 * 1885 * 2859 * 2137 4467 * * * 856 0 * * * * * * 3779 0 0 R 857 * * * * * * * * 4271 * * * * 4019 304 * * * * 3706 857 0 * * * * * * 3779 0 0 L 858 * * * * * * * * * 115 * * * * * * * 3706 * * 858 0 * * * * * * 3779 0 0 D 859 4097 * 305 2923 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962 87 4097 * 1585 585 * * 3779 1000 0 F 963 1995 * * * 3485 * * * 3706 * 4271 * * * * 4490 4747 1388 * 3886 963 0 * * * * * * 3779 0 0 P 964 3716 * * * * * * * 4097 2074 * * 1060 * * 3886 * 3629 * * 964 0 * * * * * * 3779 0 0 R 965 4019 * 4097 * * * * 4208 1401 2793 * * * * 1723 * * * * * 965 77 4271 * 1000 1000 * * 3779 1000 0 E 966 4467 * 1985 2595 * 4568 * * * * * 3319 3706 2618 4097 3377 * * * * 966 294 2441 * 1155 860 * * 3779 2008 0 G 967 * * * * * 896 * * 3706 * * 4763 2176 * 4568 4586 4507 * * * 967 116 3690 * 1296 754 * * 3779 1347 0 V 968 4682 * 4568 * * 4747 * 3140 * 2652 3123 4681 * 3886 * 3672 * 2596 * 2797 968 0 * * * * * * 3779 0 0 F 969 * * * 4568 719 * * 3420 * 1961 * * * * * * * * * * 969 115 * 3706 * * * * 3779 0 0 V 970 * * * * 2451 * * 1989 * * * 4606 * * 4413 * * 1067 * * 970 279 2509 * 1000 1000 * 0 3620 1883 1000 S 971 * * * * 4357 * * * * 2781 * 2684 * 1576 4145 1954 * * * * 971 66 4487 * 2000 415 0 * 3620 1000 1000 N 972 3716 4097 3570 * 3211 * 4682 * * 4507 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* * * * * * 3779 0 0 F 983 * * * * 2324 * * * * 2258 1608 * * 4097 * * * 4699 * 2588 983 115 * 3706 * * * * 3779 0 0 Y 984 * * * * 1632 * * * * * * * * * * * * * * 562 984 0 * * * * * 0 3620 0 1000 E 985 * * * 1715 * * 4047 * 3599 * 3890 3028 * 2217 * 4357 * * * 3347 985 0 * * * * * 0 3620 0 1000 P 986 * * * * * * * * * * * * 0 * * * * * * * 986 0 * * * * 0 * 3620 0 1000 Q 987 * * * 2185 * * * 4507 4271 * * 3706 * 3485 1114 * * 4150 * * 987 0 * * * * * * 3779 0 0 I 988 * * 4019 * * * * 3485 3665 3004 * 2917 1947 4097 4699 * 4763 3061 * * 988 0 * * * * * * 3779 0 0 I 989 3592 * * * * * * 1288 * 2967 * * 1723 * * * * 3706 * * 989 0 * * * * * * 3779 0 0 T 990 * * * * * * * * * * * * * 4586 3886 3209 511 3624 * * 990 0 * * * * * * 3779 0 0 T 991 2721 * 4467 4208 3716 3706 * 4699 * 4681 4586 * * 3672 * 3024 2759 3714 * 4271 991 0 * * * * * * 3779 0 0 D 992 1663 * 3485 * * 3058 * * 4467 * * 4490 * * * 1697 3706 * * * 992 0 * * * * * * 3779 0 0 N 993 * 3706 1097 3469 * * * * * * * 1452 * * * * * * * * 993 114 * 3716 * * * * 3779 0 0 T 994 * * * * 1007 * * 2933 * * * * * * * 3207 2658 3257 * * 994 88 * 4071 * * 0 * 3636 0 1000 F 995 * * * * 2510 * * 2729 * * * * * 3046 * * * 856 * * 995 0 * * * * 0 * 3726 0 1000 V 996 * 3706 * 4568 * * * 3716 4208 * 4097 4271 4891 1872 4763 * 4019 2087 * * 996 0 * * * * * * 3779 0 0 S 997 3716 * * * * 3706 * 1857 * 1757 3478 * * * * 3485 * 4568 * 4208 997 0 * * * * * * 3779 0 0 G 998 * * * 3062 * 3485 * 4467 * * * * * 4682 * 2321 1719 2609 * 4681 998 0 * * * * * * 3779 0 0 N 999 * * 3886 * * 3629 * * * * * 2287 * * * 732 4490 * * * 999 115 3706 * 0 * * * 3779 1000 0 C 1000 * 201 * * * * * * * * 4208 * * * 3716 * * * * * 1000 0 * * * * * * 3779 0 0 D 1001 3478 * 1725 2917 * 3716 * * * * * 2503 * 4019 * 3012 * 4747 * * 1001 0 * * * * * * 3779 0 0 V 1002 2399 * * * * * * * 3706 * * * * * * 4097 * 566 * * 1002 0 * * * * * * 3779 0 0 V 1003 * * * 4699 * 4097 * * 4208 4507 * 1575 * * * 3706 1907 2987 * * 1003 0 * * * * * * 3779 0 0 I 1004 * * * * 1767 * * 3485 * * * * * 4699 * * * 3706 * 995 1004 0 * * * * * * 3779 0 0 G 1005 * * * 4208 * 3485 * * * 4586 * * * * * * 1485 1740 * 2659 1005 0 * * * * * * 3779 0 0 I 1006 * * * * * * 4097 3485 3478 * * 1024 * * * 3083 3716 3706 * * 1006 0 * * * * * * 3779 0 0 V 1007 2903 * 3706 * * * * 2201 * 2254 * * * * * * 3126 2012 * * 1007 0 * * * * * * 3779 0 0 N 1008 * 3706 * 4097 * * * * * * * 1819 3478 * * 3462 1318 * * * 1008 0 * * * * * * 3779 0 0 N 1009 3886 * 2663 3366 * * 4699 * 4019 * * 2802 * * 3119 4747 * 3537 4097 2869 1009 0 * * * * * * 3779 0 0 T 1010 4881 * 3714 3197 * * * 4507 * 4490 * 4568 * * 4208 3182 1621 3570 * 3706 1010 77 * 4271 * * * * 3779 0 0 V 1011 * * 3607 2979 2975 * * * * 4137 3505 4807 * 2191 * * 4498 2184 * * 1011 0 * * * * 0 * 3720 0 1000 Y 1012 * * 3716 4271 4586 * * 4019 * 866 * * 2935 * * * * * * 3485 1012 0 * * * * * * 3779 0 0 D 1013 * * 3485 3352 * * 4681 3716 * * * 3478 1259 3706 * * 3140 * * * 1013 0 * * * * * * 3779 0 0 P 1014 * * 4747 3032 * * * * * 4097 * 3148 1307 3722 * 4507 2784 * * * 1014 92 4019 * 0 * * * 3779 1000 0 L 1015 * * * 3716 4271 * * 2706 * 1731 * * * * * 2776 * 1880 * * 1015 0 * * * * * * 3779 0 0 Q 1016 4097 * 4019 * * * * 1687 * 2536 * * * 1974 * * 4490 3352 * * 1016 0 * * * * * * 3779 0 0 L 1017 * * * * * * * 4586 * 4490 * 2859 632 * * 2935 * * * * 1017 0 * * * * * * 3779 0 0 E 1018 4271 * 1284 2987 * 4150 * * * * * 2185 4097 * * * 3706 * * * 1018 83 4158 * 1000 1000 * * 3779 1000 0 L 1019 * * 2504 * 4705 * * 3696 * 2078 * * * * * * 3688 4614 * 1503 1019 0 * * * * * * 3773 0 0 D 1020 * * 2603 * 2695 * * 1679 * 4026 * * 2663 * * * * 3511 * 4019 1020 0 * * * * * * 3587 0 0 S 1021 * * 401 * * * * * * * * 4125 3546 * * 3323 * * * * 1021 0 * * * * * * 3587 0 0 F 1022 * * * * 959 * * 2467 * * * * * * * * * 1715 * * 1022 0 * * * * * * 3587 0 0 K 1023 * * 2389 3546 * * * * 1933 * * 1322 * 4019 * * * * * * 1023 0 * * * * * * 3587 0 0 E 1024 4539 * 2986 1525 * * * * 1531 * * * * 2865 * * * * * * 1024 0 * * * * * * 3587 0 0 E 1025 * * * 737 * * * * * * * * * * * * 1322 * * * 1025 68 4448 * 2000 415 * * 3587 1000 0 L 1026 * * * * 1893 * * * * 753 * * * * * * * 2865 * * 1026 0 * * * * * * 3587 0 0 D 1027 * * 1648 2753 * * * * 4414 * * 3317 * 3424 3546 2674 * * * 4325 1027 0 * * * * * * 3587 0 0 K 1028 * * 2362 1459 * * * * 1532 * * * * 3385 * * * * * * 1028 0 * * * * * * 3587 0 0 Y 1029 * * * * 2092 * * 2205 * 3856 * * * * * * * * 2112 2010 1029 0 * * * * * * 3560 0 0 F 1030 4220 * * * 986 * * 4226 * 3148 * * * * * 4130 * * 3709 2821 1030 0 * * * * * * 3551 0 0 K 1031 4000 * 4026 2770 * * * * 1271 * * 3533 3891 2631 * * * * * * 1031 0 * * * * * * 3504 0 0 N 1032 * * 3402 * * * * * * * * 143 * * * * * * * * 1032 0 * * * * * * 3384 0 0 H 1033 * * * * 2681 * 1977 * 2739 * 2578 * * 1874 * * * * * * 1033 0 * * * * * * 2775 0 0 T 1034 * * * * * * * * * * * * * * * 1716 524 * * * 1034 0 * * 0 * * * 2775 0 0 //