HHsearch 1.5 NAME c8yw1D_ FAM FILE c8yw1D_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8yw1D_.a3m DATE Sat Dec 14 11:04:29 2024 LENG 161 match states, 161 columns in multiple alignment FILT 6 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.3596 -3.2515 SEQ >ss_pred CCEEEEEEECCCCEEEEEECCCEEEEEEEECCEEECEEEEEEEECCHHHHHHHEEECCEEECCHHHCCHHHHHHHCCCHHCCCCEEECCCEEEEEECCCE EEEECCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEECCCCCCCC >ss_conf 9506888751654021221573011599974645000132232265767432000000010106540435444213310007553431400016871604 7762124688888872142798399999727888874168999874673067556554049 >Consensus krxRmxxKxexdxtFxvxxeGxixGyAxxxgxkvxkPxHVkGxiDhpxLaxlkfxkssxyDlExAxxPxxMrsdaxxytxexpegxYnwhhGavQxxxgr ftipxgxgxxGDSGRPixDNsGrVVaIVLGGxxegxrTaLSVvxwnkkxxxkxtpexxxew >c8yw1D_ KRERMCMKIENDCIFEVKHEGKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHGAVQYSGGR FTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW >UniRef50_P36329(115-275:1255) E1 envelope glycoprotein n=477 Tax=root RepID=POLS_EEVV3 E=2e-75 s/c=1.76 id=65% cov=100% -RQRMVMKLESDKTFPIMLEGKINGYACVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADVPQNMRADTFKYTHEKPQGYYSWHHGAVQYENGR FTVPKGVGAKGDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNEKGVTvKYTPENCEQW >UniRef50_P03316(103-264:1245) E1 envelope glycoprotein n=116 Tax=WEEV complex RepID=POLS_SINDV E=3e-75 s/c=1.74 id=68% cov=100% -RQRMALKLEADRLFDVKNEdGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGG RFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTiKTTPEGTEEW >UniRef50_Q86925(108-267:1244) E1 envelope glycoprotein n=959 Tax=Alphavirus RepID=POLS_AURAV E=2e-71 s/c=1.68 id=63% cov=99% ---RTALKFEADRTFVGKNEdGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEVFYNWHHGAVQFSGG RFTIPTGVGGPGDSGRPILDNSGKVVAIVLGGANEVPGTALSVVTWNKKGaAIKTTHEDTVEW >UniRef50_Q8QL52(122-273:1322) E1 envelope glycoprotein n=104 Tax=Alphavirus RepID=POLS_SLDV E=7e-60 s/c=1.52 id=40% cov=94% KEVRISVKRARQSTFPVYHDGAISGYAVLIGSRVFKPAHVKGKFDHPELADIKFQVAEVMDLEAAAYPKCMRDQAAEPATMM-DGVYNGEYGNIQeWRTI LYSMRAAEASRGDSGRPFTDNSGKVVGIVLGGGPDGRRTRLSVIGFDKKLKAR--------- >UniRef50_Q993S2(1-36:661) Structural polyprotein (Fragment) n=1 Tax=Seal louse virus RepID=Q993S2_9VIRU E=4e-10 s/c=1.83 id=76% cov=23% ---------------------------------------------------------------------------------------------------- -------------------------AIVLGGANEGERTALSVVTWNKNTVVKVTPEETVEW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1507 0 0 R 2 * * * 1679 * * * * * * * * * * 540 * * * * * 2 0 * * * * * * 1817 0 0 E 3 * * * 2180 * * * * * * * * * 1099 * * * 1679 * * 3 0 * * * * * * 1817 0 0 R 4 * * * * * * * * * * * * * * 0 * * * * * 4 0 * * * * * * 1862 0 0 M 5 * * * * * * * 1863 * * 868 * * * * * 2495 * * * 5 0 * * * * * * 1862 0 0 C 6 1520 2489 * * * * * * * * * * * * * 1863 * 2334 * * 6 0 * * * * * * 1862 0 0 M 7 * * * * * * * * * 1520 1409 * * * * * * 1863 * * 7 0 * * * * * * 1862 0 0 K 8 * * * * * * * * 0 * * * * * * * * * * * 8 0 * * * * * * 1862 0 0 I 9 * * * * 2495 * * 2489 * 1436 * * * * 1863 * * * * * 9 0 * * * * * * 1862 0 0 E 10 1863 * * 464 * * * * * * * * * * * * * * * * 10 0 * * * * * * 1862 0 0 N 11 1520 * * * * * * * * * * 2489 * * 1863 2334 * * * * 11 0 * * * * * * 1862 0 0 D 12 * * 464 * * * * * * * * * * 1863 * * * * * * 12 0 * * * * * * 1862 0 0 C 13 * 2489 * * * * * * 2334 * * * * * 1520 1863 * * * * 13 0 * * * * * * 1862 0 0 I 14 * * * * * * * 2489 * 2546 * * * * * * 620 * * * 14 0 * * * * * * 1862 0 0 F 15 * * * * 0 * * * * * * * * * * * * * * * 15 0 * * * * * * 1862 0 0 E 16 * * 2546 2489 * * * * * * * * 1079 * * * * 2495 * * 16 0 * * * * * * 1862 0 0 V 17 * * * * * 2495 * 2334 * * * * * * * * * 680 * * 17 0 * * * * * * 1862 0 0 K 18 * * * * * * * * 925 * 2334 * * * * * * * * 1863 18 0 * * * * * * 1862 0 0 H 19 * * * * * * 1142 * * 2334 * 1520 * * * * * * * * 19 0 * * * * * * 1862 0 0 E 20 * * 1863 464 * * * * * * * * * * * * * * * * 20 618 1520 * 0 * * * 1862 1176 0 G 21 * * * * * 0 * * * * * * * * * * * * * * 21 0 * * * * * * 1862 0 0 K 22 1863 * 2546 * * * * * 853 * * * * * * * * * * * 22 0 * * * * * * 1862 0 0 V 23 * * * * * * * 620 * * * * * * * * * 1517 * * 23 0 * * * * * * 1862 0 0 T 24 * * * * * * * 2546 * * 2495 2334 * * * 1863 2489 * * * 24 0 * * * * * * 1862 0 0 G 25 * * * * * 0 * * * * * * * * * * * * * * 25 0 * * * * * * 1862 0 0 Y 26 * * * * * * 2546 * * * * * * * * * * * * 271 26 0 * * * * * * 1862 0 0 A 27 0 * * * * * * * * * * * * * * * * * * * 27 0 * * * * * * 1862 0 0 C 28 * 1409 * * * * * * * 2546 * * * * * * * 1145 * * 28 0 * * * * * * 1862 0 0 L 29 1520 * * * * * * * * 1142 * * * * * * * 2334 * * 29 0 * * * * * * 1862 0 0 V 30 * * * * * * * 1863 * * 1520 * * * * * * 1409 * * 30 0 * * * * * * 1862 0 0 G 31 * * * 1520 * 618 * * * * * * * * * * * * * * 31 0 * * * * * * 1862 0 0 D 32 * * 2489 * * 871 * * * * * * * * * 1863 * * * * 32 0 * * * * * * 1862 0 0 K 33 * * * * * * * * 464 * * * * * 1863 * * * * * 33 0 * * * * * * 1862 0 0 V 34 * * * * * * * * * 2334 * * * * * * * 319 * * 34 0 * * * * * * 1862 0 0 M 35 * * * * 1079 * * 2495 * * 1517 * * * * * * * * * 35 0 * * * * * * 1862 0 0 K 36 * * * * * * * * 319 * * * * * 2334 * * * * * 36 0 * * * * * * 1862 0 0 P 37 * * * * * * * * * * * * 0 * * * * * * * 37 0 * * * * * * 1862 0 0 A 38 1142 * * * * * * * * 1520 2334 * * * * * * * * * 38 0 * * * * * * 1862 0 0 H 39 * * * * * * 0 * * * * * * * * * * * * * 39 0 * * * * * * 1862 0 0 V 40 * * * * * * * * * * * * * * * * * 0 * * 40 0 * * * * * * 1862 0 0 K 41 * * * 2334 * * * * 319 * * * * * * * * * * * 41 0 * * * * * * 1862 0 0 G 42 * * * * * 0 * * * * * * * * * * * * * * 42 0 * * * * * * 1862 0 0 V 43 * * * * * * * * 1079 * * * * * * * 1520 2489 * * 43 0 * * * * * * 1862 0 0 I 44 * * * * 1863 * * 464 * * * * * * * * * * * * 44 0 * * * * * * 1862 0 0 D 45 * * 0 * * * * * * * * * * * * * * * * * 45 0 * * * * * * 1862 0 0 N 46 * * * * * * 681 * * * * 1409 * * * * * * * * 46 0 * * * * * * 1862 0 0 A 47 2489 * 2334 * * * * * * * * * 681 * * * * * * * 47 0 * * * * * * 1862 0 0 D 48 2495 * 2489 1863 * * * * * * * * * * * * * 1436 * * 48 0 * * * * * * 1862 0 0 L 49 * * * * * * * * * 0 * * * * * * * * * * 49 0 * * * * * * 1862 0 0 A 50 271 * * * * * * * * * * * * * * 2546 * * * * 50 0 * * * * * * 1862 0 0 K 51 2334 * 1863 * * * * * 925 * * * * * * * * * * * 51 0 * * * * * * 1862 0 0 L 52 * * * * * * * 1863 * 464 * * * * * * * * * * 52 0 * * * * * * 1862 0 0 A 53 2489 * * * * * * * 283 * * * * * * * * * * * 53 0 * * * * * * 1862 0 0 F 54 * * * * 319 * * * * * * * * * * * 2334 * * * 54 0 * * * * * * 1862 0 0 K 55 * * * * * * * * 1409 * * * * 1863 * * 1520 * * * 55 0 * * * * * * 1862 0 0 K 56 * * * * * * * * 464 * * * * * * * * 1863 * * 56 0 * * * * * * 1862 0 0 S 57 1079 * * * * * * * * * * * * * * 925 * * * * 57 0 * * * * * * 1862 0 0 S 58 * * * 1863 * * * * * * * * * * * 464 * * * * 58 0 * * * * * * 1862 0 0 K 59 2546 * * * * * * * 1409 * * * * * * 2495 * 1863 * * 59 0 * * * * * * 1862 0 0 Y 60 * * * * * * * * * * 1863 * * * * * * * * 464 60 0 * * * * * * 1862 0 0 D 61 * * 0 * * * * * * * * * * * * * * * * * 61 0 * * * * * * 1862 0 0 L 62 * * * * * * * * * 618 1520 * * * * * * * * * 62 0 * * * * * * 1862 0 0 E 63 * * * 0 * * * * * * * * * * * * * * * * 63 0 * * * * * * 1862 0 0 C 64 1863 2489 * * 1520 * * * * * * * * * * * * * * 2334 64 0 * * * * * * 1862 0 0 A 65 0 * * * * * * * * * * * * * * * * * * * 65 0 * * * * * * 1862 0 0 Q 66 1863 * 2334 * * * * * 2495 * * * * 1517 * * * * * * 66 0 * * * * * * 1862 0 0 I 67 * * * * * * * 2489 * 1520 * * * * * * * 2334 * 1863 67 0 * * * * * * 1862 0 0 P 68 * * * * * * * * * * * * 0 * * * * * * * 68 0 * * * * * * 1862 0 0 V 69 * * * * * * * * 1863 * * * * 2334 * * 2495 1517 * * 69 0 * * * * * * 1862 0 0 H 70 * 1863 * 2495 * * 2489 * * * * 1436 * * * * * * * * 70 0 * * * * * * 1862 0 0 M 71 * * * * * * * * * * 0 * * * * * * * * * 71 0 * * * * * * 1862 0 0 R 72 * * * * * * * * 2495 * * * * * 282 * * * * * 72 0 * * * * * * 1862 0 0 S 73 2334 * 1863 * * * * * * * * * * * * 925 * * * * 73 0 * * * * * * 1862 0 0 D 74 * * 853 2546 * * * * * * * * * 1863 * * * * * * 74 0 * * * * * * 1862 0 0 A 75 319 * * * * * * * * * * * * * * * 2334 * * * 75 0 * * * * * * 1862 0 0 S 76 1863 * * * 871 * * * * * * * * * * 2489 * * * * 76 0 * * * * * * 1862 0 0 K 77 * * * 1863 * 2495 * * 1409 * * * * * * * 2546 * * * 77 0 * * * * * * 1862 0 0 Y 78 * * * * * * * * * * * * 1863 * * * * * * 464 78 0 * * * * * * 1862 0 0 T 79 1863 * * * * * * * * * * * * * * * 464 * * * 79 0 * * * * * * 1862 0 0 H 80 * * * * * * 1409 * * * * * * * * 2546 1145 * * * 80 0 * * * * * * 1862 0 0 E 81 * * * 464 * * * * * * 1863 * * * * * * * * * 81 0 * * * * * * 1862 0 0 K 82 * * * * * * 1520 * 1409 * 1863 * * * * * * * * * 82 464 * 1863 * * * * 1862 0 0 P 83 * * * * * * * * * * * * 0 * * * * * * * 83 0 * * * * 0 * 1518 0 1000 E 84 * * 1863 925 * * * * * * * * * 2334 * * * * * * 84 0 * * * * * * 1862 0 0 G 85 * * * * * 282 * * * * * * * * * * * 2495 * * 85 0 * * * * * * 1862 0 0 H 86 * * * * 1520 * 2489 * * * * * * * * * * 1863 * 2334 86 0 * * * * * * 1862 0 0 Y 87 * * * * * * * * * * * * * * * * * * * 0 87 0 * * * * * * 1862 0 0 N 88 * * * * * * * * * * * 319 * * * 2334 * * * * 88 0 * * * * * * 1862 0 0 W 89 * * * * * 1863 * * * * * * * * * * * * 464 * 89 0 * * * * * * 1862 0 0 H 90 * * * 1863 * * 464 * * * * * * * * * * * * * 90 0 * * * * * * 1862 0 0 H 91 * * * * * * 464 * * * * * * * * * * * * 1863 91 0 * * * * * * 1862 0 0 G 92 * * * * * 0 * * * * * * * * * * * * * * 92 0 * * * * * * 1862 0 0 A 93 464 * * * * * * * * * * 1863 * * * * * * * * 93 0 * * * * * * 1862 0 0 V 94 * * * * * * * 1863 * * * * * * * * * 464 * * 94 0 * * * * * * 1862 0 0 Q 95 * * * * * * * * * * * * * 0 * * * * * * 95 464 1863 * 0 * * * 1862 1000 0 Y 96 * * * * 2495 * * * * * * * * * * * * * 1863 868 96 0 * * * * * * 1862 0 0 S 97 * * * 2334 * * * * * * * * * * 1863 925 * * * * 97 0 * * * * * * 1862 0 0 G 98 * * * * * 925 * * * * * 2334 * * * * 1863 * * * 98 0 * * * * * * 1862 0 0 G 99 * * * * * 464 * 1863 * * * * * * * * * * * * 99 0 * * * * * * 1862 0 0 R 100 * * * * * * * * * 1863 * * * * 464 * * * * * 100 0 * * * * * * 1862 0 0 F 101 * * * * 464 * * * * * * * * * * * * * * 1863 101 0 * * * * * * 1862 0 0 T 102 * * * * * * * * * * * * * * * 1863 464 * * * 102 0 * * * * * * 1862 0 0 I 103 * * * * * * * 925 * * 1863 * * * * * * 2334 * * 103 0 * * * * * * 1862 0 0 P 104 * * * * * * * * * * * * 464 * 1863 * * * * * 104 0 * * * * * * 1862 0 0 T 105 1863 * * * * * * * 2334 * * * * * 2546 * 1492 * * * 105 0 * * * * * * 1862 0 0 G 106 1863 * * * * 464 * * * * * * * * * * * * * * 106 0 * * * * * * 1862 0 0 A 107 2489 * * 1863 * * * * * * * * * * * * * 871 * * 107 0 * * * * * * 1862 0 0 G 108 1863 * * * * 464 * * * * * * * * * * * * * * 108 0 * * * * * * 1862 0 0 K 109 2334 * * * * 1520 * * 2489 * * * * * * 1863 * * * * 109 0 * * * * * * 1862 0 0 P 110 * * * * * * * * 2334 * * * 1492 * 1164 * * * * * 110 0 * * * * * * 1862 0 0 G 111 * * * * * 0 * * * * * * * * * * * * * * 111 0 * * * * * * 1862 0 0 D 112 * * 0 * * * * * * * * * * * * * * * * * 112 0 * * * * * * 1862 0 0 S 113 * * * * * * * * * * * * * * * 0 * * * * 113 0 * * * * * * 1862 0 0 G 114 * * * * * 0 * * * * * * * * * * * * * * 114 0 * * * * * * 1862 0 0 R 115 * * * * * * * * * * * * * * 0 * * * * * 115 0 * * * * * * 1862 0 0 P 116 * * * * * * * * * * * * 0 * * * * * * * 116 0 * * * * * * 1862 0 0 I 117 * * * * 1863 * * 464 * * * * * * * * * * * * 117 0 * * * * * * 1862 0 0 F 118 * * * * 2489 * * * * 1413 2546 * * * * * 1863 * * * 118 0 * * * * * * 1862 0 0 D 119 * * 0 * * * * * * * * * * * * * * * * * 119 0 * * * * * * 1862 0 0 N 120 * * * * * * * * * * * 0 * * * * * * * * 120 0 * * * * * * 1862 0 0 K 121 * * * * * * * * 2489 * * * * 2334 * 681 * * * * 121 0 * * * * * * 1862 0 0 G 122 * * * * * 0 * * * * * * * * * * * * * * 122 0 * * * * * * 1862 0 0 R 123 * * * * * * * * 1145 * * * * * 868 * * * * * 123 0 * * * * * * 1862 0 0 V 124 * * * * * * * * * * * * * * * * * 0 * * 124 0 * * * * * * 1862 0 0 V 125 * * * * * * * * * * * * * * * * * 0 * * 125 0 * * * * * * 1862 0 0 A 126 432 * * * * 1951 * * * * * * * * * * * * * * 126 0 * * * * * * 1715 0 0 I 127 * * * * * * * 0 * * * * * * * * * * * * 127 0 * * * * * * 1715 0 0 V 128 * * * * * * * * * * * * * * * * * 0 * * 128 0 * * * * * * 1715 0 0 L 129 * * * * * * * * * 0 * * * * * * * * * * 129 0 * * * * * * 1715 0 0 G 130 * * * * * 0 * * * * * * * * * * * * * * 130 0 * * * * * * 1715 0 0 G 131 * * * * * 0 * * * * * * * * * * * * * * 131 0 * * * * * * 1715 0 0 A 132 751 * * * * 1951 * * * * * * * * * * * 2766 * * 132 0 * * * * * * 1715 0 0 N 133 * * 2801 * * * * * * * * 742 1951 * * * * * * * 133 0 * * * * * * 1715 0 0 E 134 * * 1951 432 * * * * * * * * * * * * * * * * 134 0 * * * * * * 1715 0 0 G 135 * * * * * 264 * * * * * * * * * * * 2582 * * 135 0 * * * * * * 1715 0 0 S 136 * * * 2790 * * * * * * * * 2582 * 1951 1804 2801 * * * 136 0 * * * * * * 1715 0 0 R 137 * * * * * 2582 * * * * * * * * 264 * * * * * 137 0 * * * * * * 1715 0 0 T 138 * * * * * * * * * * * * * * * * 0 * * * 138 0 * * * * * * 1715 0 0 A 139 432 * * * * * * * * * * * * * 1951 * * * * * 139 0 * * * * * * 1715 0 0 L 140 * * * * * * * * * 0 * * * * * * * * * * 140 0 * * * * * * 1715 0 0 S 141 * * * * * * * * * * * * * * * 0 * * * * 141 0 * * * * * * 1715 0 0 V 142 * * * * * * * * * * * * * * * * * 0 * * 142 0 * * * * * * 1715 0 0 V 143 * * * * * * * 1951 * * * * * * * * * 432 * * 143 0 * * * * * * 1715 0 0 T 144 * * * * * 1951 * * * * 2766 * * * * * 751 * * * 144 0 * * * * * * 1715 0 0 W 145 * * * * 1951 * * * * * * * * * * * * * 432 * 145 0 * * * * * * 1715 0 0 N 146 * * 1951 * * * * * * * * 432 * * * * * * * * 146 0 * * * * * * 1715 0 0 K 147 * * * 2766 * * * * 495 * * * * * * 2801 * * * * 147 0 * * * * * * 1715 0 0 D 148 * * 2844 * * * * * 482 * * 2790 * * * * * * * * 148 0 * * * * * * 1715 0 0 M 149 * * * * * 1128 * * * 1951 2844 * * * * * 2790 * * * 149 264 2582 * 0 * * * 1715 1000 0 V 150 2582 * * * * * * * 1314 * * * * * * * * 1215 * * 150 0 * * * * * * 1715 0 0 T 151 1951 * * * * * * 2582 * * * * * * * * 1218 2790 * * 151 495 1783 * 0 * * * 1715 1312 0 R 152 * * * * * * * * 732 * * * * * 1329 * * * * * 152 0 * * * * * * 1715 0 0 V 153 * * * * * * * * * * * * * * * * 1307 1389 * 2223 153 0 * * * * * * 1483 0 0 T 154 * * * * * * * * * * * * * * * * 0 * * * 154 0 * * * * * * 1483 0 0 P 155 * * * * * * 2215 * * * * * 350 * * * * * * * 155 0 * * * * * * 1483 0 0 E 156 * * * 0 * * * * * * * * * * * * * * * * 156 0 * * * * * * 1483 0 0 G 157 * * 2215 2394 * 1395 * * * * * 2223 * * * * * * * * 157 0 * * * * * * 1483 0 0 S 158 * 2223 * * * * * * * * * * * * * 2385 751 * * * 158 0 * * * * * * 1483 0 0 E 159 * * * 751 * * * * * * * * * * * * * 1302 * * 159 0 * * * * * * 1483 0 0 E 160 * * * 348 * * * * * * * * * 2223 * * * * * * 160 0 * * * * * * 1483 0 0 W 161 * * * * * * * * * * * * * * * * * * 0 * 161 0 * * 0 * * * 1483 0 0 //