HHsearch 1.5 NAME c8ydmD_ FAM FILE c8ydmD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8ydmD_.a3m DATE Sat Feb 22 09:31:29 2025 LENG 36 match states, 36 columns in multiple alignment FILT 2 out of 4 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.2 EVD 0.5020 3.1019 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >ss_conf 951576799999999999999999752755110159 >Consensus spvrtxivixtxlgxvxallihfivlssxxxnwlsn >c8ydmD_ SPVRTNIVIFTILGFVVALLIHFIVLSSPEYNWLSN >UniRef50_Q83XD1(9-39:42) Alpha subunit of light-harvesting 1 n=2 Tax=Roseiflexus RepID=Q83XD1_9CHLR E=0.0009 s/c=1.44 id=62% cov=89% ---RTSVVVSTLLGLVMALLIHFVVLSSGAFNWL-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1000 0 0 V 3 * * * * * * * * * * * * * * * * * 0 * * 3 0 * * * * * * 1000 0 0 R 4 * * * * * * * * * * * * * * 0 * * * * * 4 0 * * * * * * 1279 0 0 T 5 * * * * * * * * * * * * * * * * 0 * * * 5 0 * * * * * * 1279 0 0 N 6 * * * * * * * * * * * 1000 * * * 1000 * * * * 6 0 * * * * * * 1279 0 0 I 7 * * * * * * * 1000 * * * * * * * * * 1000 * * 7 0 * * * * * * 1279 0 0 V 8 * * * * * * * * * * * * * * * * * 0 * * 8 0 * * * * * * 1279 0 0 I 9 * * * * * * * 1000 * * * * * * * * * 1000 * * 9 0 * * * * * * 1279 0 0 F 10 * * * * 1000 * * * * * * * * * * 1000 * * * * 10 0 * * * * * * 1279 0 0 T 11 * * * * * * * * * * * * * * * * 0 * * * 11 0 * * * * * * 1279 0 0 I 12 * * * * * * * 1000 * 1000 * * * * * * * * * * 12 0 * * * * * * 1279 0 0 L 13 * * * * * * * * * 0 * * * * * * * * * * 13 0 * * * * * * 1279 0 0 G 14 * * * * * 0 * * * * * * * * * * * * * * 14 0 * * * * * * 1279 0 0 F 15 * * * * 1000 * * * * 1000 * * * * * * * * * * 15 0 * * * * * * 1279 0 0 V 16 * * * * * * * * * * * * * * * * * 0 * * 16 0 * * * * * * 1279 0 0 V 17 * * * * * * * * * * 1000 * * * * * * 1000 * * 17 0 * * * * * * 1279 0 0 A 18 0 * * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 1279 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 1279 0 0 L 20 * * * * * * * * * 0 * * * * * * * * * * 20 0 * * * * * * 1279 0 0 I 21 * * * * * * * 0 * * * * * * * * * * * * 21 0 * * * * * * 1279 0 0 H 22 * * * * * * 0 * * * * * * * * * * * * * 22 0 * * * * * * 1279 0 0 F 23 * * * * 0 * * * * * * * * * * * * * * * 23 0 * * * * * * 1279 0 0 I 24 * * * * * * * 1000 * * * * * * * * * 1000 * * 24 0 * * * * * * 1279 0 0 V 25 * * * * * * * * * * * * * * * * * 0 * * 25 0 * * * * * * 1279 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 1279 0 0 S 27 * * * * * * * * * * * * * * * 0 * * * * 27 0 * * * * * * 1279 0 0 S 28 * * * * * * * * * * * * * * * 0 * * * * 28 0 * * * * * * 1279 0 0 P 29 * * * * * 1000 * * * * * * 1000 * * * * * * * 29 0 * * * * * * 1279 0 0 E 30 1000 * * 1000 * * * * * * * * * * * * * * * * 30 0 * * * * * * 1279 0 0 Y 31 * * * * 1000 * * * * * * * * * * * * * * 1000 31 0 * * * * * * 1279 0 0 N 32 * * * * * * * * * * * 0 * * * * * * * * 32 0 * * * * * * 1279 0 0 W 33 * * * * * * * * * * * * * * * * * * 0 * 33 0 * * * * * * 1279 0 0 L 34 * * * * * * * * * 0 * * * * * * * * * * 34 0 * * * * * * 1279 0 0 S 35 * * * * * * * * * * * * * * * 0 * * * * 35 0 * * * * * * 1000 0 0 N 36 * * * * * * * * * * * 0 * * * * * * * * 36 0 * * 0 * * * 1000 0 0 //