HHsearch 1.5 NAME c8urjE_ FAM FILE c8urjE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8urjE_.a3m DATE Sat May 3 10:51:42 2025 LENG 80 match states, 80 columns in multiple alignment FILT 20 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.4594 1.4844 SEQ >ss_pred CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCC >ss_conf 98999999999974688878854278999999999999999999999999987088888887344611120110210369 >Consensus xLLxavriIKxLYqSnPyPxxxGtrxaRRnRRRRWRxRQxQIxxiseRILxtxlgrxxxpxxvxlPdxxxxxlxxLxldc >c8urjE_ DLLKAVRLIKFLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQTVDEMTKKFGTLTIDC >UniRef50_Q8JAG7(14-98:135) Rev protein n=2 Tax=Simian immunodeficiency virus RepID=Q8JAG7_SIVCZ E=2e-06 s/c=0.63 id=53% cov=94% NLILACRLIKTLHRSSkaglltslpadPYPTSSGTRSARRNRRRRWRARQGQVREISNRILESLVGRPEEPGDLDLPD-----LGQLSLD- >UniRef50_B9V2U7(11-77:104) Rev protein n=6 Tax=Primate lentivirus group RepID=B9V2U7_SIVCZ E=1e-05 s/c=0.76 id=50% cov=85% ELLTKIRIIRLLYQSNPWPEPGPSRNSTRNRRRRWKGRQRQIDQIAGRILTSHLGRYQNPGCVDLPD------------- >UniRef50_Q699W3(16-91:99) Rev protein n=2 Tax=Simian immunodeficiency virus RepID=Q699W3_SIVCZ E=0.0003 s/c=0.61 id=47% cov=85% QLLKVISLIKILYQSivsrifpfaDPYPKGGGSASTRRRRRQKWRRRQGQVDSIAERILQSHLGGSPTTADVALPD------------- >UniRef50_Q8AIH7(9-84:105) Protein Rev n=17 Tax=Primate lentivirus group RepID=REV_SIVTN E=7e-14 s/c=1.03 id=53% cov=85% NLLYTVRIIKILYDSNPYPSGAGSRTARRNRRRRWRQRQHQVDALASRILQYRLGGPQEPPHLDIPD------------- >UniRef50_P0C1L4(9-81:102) Protein Rev n=6 Tax=Primate lentivirus group RepID=REV_HV1AN E=1e-09 s/c=0.88 id=44% cov=85% QLLQAIQIIKILYQSNPQPSPRGSRNARKNRRRRWRRRQAQVDTLAARVLATVVHGPQNNNIVDLPP------------- >UniRef50_P27971(9-57:89) Protein Rev n=7 Tax=Simian immunodeficiency virus RepID=REV_SIVV1 E=3e-06 s/c=1.08 id=54% cov=62% ---RLLRLIAFLYRSNPYPSVEGTARQRRRARRRWKNRQKQIYALAERIWGT---------------------------- >UniRef50_Q87482(7-75:99) Rev n=8 Tax=Simian immunodeficiency virus RepID=Q87482_SIVCZ E=0.0002 s/c=0.69 id=38% cov=85% --LRRFRIIKYLYTTNPYPPGQGTARQRRRARQRWAKQRQQILHLAERILQT---------PVSQIDNLAQELDQLVL-- >UniRef50_P17280(13-86:124) Protein Rev n=817 Tax=Primate lentivirus group RepID=REV_SIVCZ E=4e-14 s/c=1.07 id=60% cov=94% -LLQAVKIIKILYQSNPYPSPEGTRKARRNRRRRWRARQKQISEISGRVLATYLGRPPKPGDLELP-----ELDKLSLQC >UniRef50_A4UDH6(10-98:127) Rev protein n=3 Tax=Simian immunodeficiency virus RepID=A4UDH6_SIVCZ E=2e-11 s/c=0.79 id=51% cov=100% ELLKACQTIKILYNSraglfsssstDPYPSPGGTKNARRNRRRRWRQRQCQIRALSERILVSYLGRPPQPDSVELPDLEKLSLKPLVAD- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 2273 1485 * * * * * * * 2493 * 1953 * * * * * * 1 0 * * * * * * 2161 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 2134 0 0 L 3 * * * * * * * 3810 * 214 * * * * * * * 3903 * * 3 0 * * * * * * 2287 0 0 K 4 * * * * * * * * 1234 3889 * * * 2284 2671 * 3560 * * 4055 4 0 * * * * * * 2362 0 0 A 5 919 * * * * * * * 3560 4013 * * * * 3395 * 2642 3858 * * 5 0 * * * * * * 2362 0 0 V 6 * 2978 * * 3395 * * 1883 * 4013 * * * * * * * 1168 * * 6 0 * * * * * * 2362 0 0 R 7 * * * * * * * * 3488 * * * * 2500 588 3858 * * * * 7 0 * * * * * * 2362 0 0 L 8 * * * * * * * 910 * 1291 * * * * * * 4073 * * * 8 0 * * * * * * 2362 0 0 I 9 * * * * * * * 0 * * * * * * * * * * * * 9 0 * * * * * * 2362 0 0 K 10 4013 * * * * * * * 229 * * * * * 3560 * * * * * 10 0 * * * * * * 2362 0 0 F 11 * * * * 2620 * * 1198 3964 2951 * * * * * * 3889 * * 2832 11 0 * * * * * * 2362 0 0 L 12 * * * * * * * * * 0 * * * * * * * * * * 12 0 * * * * * * 2402 0 0 Y 13 * * * * * * 4129 * * * * * * * * * * 4157 * 173 13 87 * 4099 * * * * 2402 0 0 Q 14 * * 4021 * * * * * * * * 4013 * 742 3008 4121 3367 * * * 14 0 * * * * * 0 2383 0 1000 S 15 * * * * * * * * 3972 * * * * * * 243 3454 * * * 15 201 2942 * 3251 160 * 0 2343 1378 1000 N 16 * * 2449 * * * * * * * * 609 * 3972 * 3361 * * * * 16 84 4147 * 3459 138 0 * 2343 1000 1000 P 17 * * * * * * * * * * * * 0 * * * * * * * 17 0 * * * * * * 2375 0 0 P 18 * 3446 * * 4806 * * * * 4040 * * 3464 4131 * * * * 3860 749 18 0 * * * * * * 2375 0 0 P 19 * * * * * * * * * * * * 0 * * * * * * * 19 52 4826 * 0 * * * 2375 1000 0 N 20 * * * 3860 * * * 4391 2930 * * 3063 3536 * 4040 1597 2688 * * * 20 0 * * * * * * 2375 0 0 P 21 * * * * * 2351 * * * * * * 951 * * 2496 4040 4363 * * 21 0 * * * * * * 2375 0 0 E 22 3260 * * 1538 * 2504 * * * * * * * 2456 2811 4315 * * * * 22 0 * * * * * * 2375 0 0 G 23 * * * * * 103 * * * * * * 3860 * * * * * * * 23 0 * * * * * * 2375 0 0 T 24 * * * * * * * * * * * * * * * 1402 686 * * * 24 0 * * * * * * 2375 0 0 R 25 2047 * * * * * * * 3340 * * * * * 601 * * * * * 25 0 * * * * * * 2375 0 0 Q 26 * * * * * * * * 4604 * * 1860 * 1756 2891 2306 4312 * * * 26 0 * * * * * * 2375 0 0 A 27 441 * * * * * * * * * * * * 2891 * 3860 4070 * * * 27 0 * * * * * * 2375 0 0 R 28 * * * * * * * * * * * * * 4040 200 * 3860 * * * 28 0 * * * * * * 2375 0 0 R 29 * * * * * * * * 2748 * * * * * 233 * * * * * 29 0 * * * * * * 2375 0 0 N 30 * * * * * * * * * * * 406 * * 2028 * * * * * 30 0 * * * * * * 2375 0 0 R 31 2891 * * * * * * * * * * * * * 209 * * * * * 31 0 * * * * * * 2375 0 0 R 32 * * * * * * * * * * * * * * 0 * * * * * 32 0 * * * * * * 2375 0 0 R 33 * * * * * * * * * * * * * 2779 227 * * * * * 33 0 * * * * * * 2375 0 0 R 34 * * * * * * * * 3178 * * * * * 169 * * * * * 34 0 * * * * * * 2375 0 0 W 35 * * * * * * * * * * * * * * * * * * 0 * 35 0 * * * * * * 2375 0 0 R 36 3536 * * * * * * * 3090 * * * * * 329 * * * * * 36 0 * * * * * * 2375 0 0 E 37 1752 * * 3464 * 3860 * 4591 3536 * * 4363 * 3348 1893 * * * * * 37 0 * * * * * * 2375 0 0 R 38 * * * * * * * * * * * * * 2436 295 * * * * * 38 0 * * * * * * 2375 0 0 Q 39 * * * * * * * * * * * * * 130 3536 * * * * * 39 0 * * * * * * 2375 0 0 R 40 2626 4385 * * * 3187 4312 * 3478 4391 * * * 3536 1299 * * * * * 40 0 * * * * * * 2375 0 0 Q 41 * * * * * * 4314 * * * * * * 74 * * * * * * 41 0 * * * * * * 2375 0 0 I 42 * * * * * * * 652 * * * * * * * * * 1459 * * 42 0 * * * * * * 2375 0 0 H 43 4391 * 1610 4591 * * 3713 * * 3536 * * * * 1836 4604 * 4296 * 4363 43 0 * * * * * * 2375 0 0 S 44 2102 * * 2976 * 4591 3536 * * * * * * 2948 * 1619 4131 * * * 44 0 * * * * * * 2375 0 0 I 45 * * * * * * * 694 * 1389 * * * * * * * * * * 45 0 * * * * * * 2375 0 0 S 46 1236 * * * * * * * * * * * * * * 797 * * * * 46 0 * * * * * * 2375 0 0 E 47 3220 * * 770 * 3185 * * * * * 4315 * * * 3445 4210 * * * 47 0 * * * * * * 2375 0 0 R 48 * * * * * * * * * * * * * * 74 * * * 4314 * 48 0 * * * * * * 2375 0 0 I 49 * * * * * * * 149 * * * * * * * * * 3348 * * 49 0 * * * * * * 2375 0 0 L 50 * * * * 3584 * * * * 204 * * * * * * * * 4363 * 50 0 * * * * * * 2375 0 0 S 51 2368 * * 3305 * 3576 * * * * * * * 2351 * 1939 3860 4385 * 4391 51 0 * * * * * * 2375 0 0 T 52 4826 * 4727 * * * 4391 * * * * 4314 * * * 2142 996 * * 3304 52 137 * 3465 * * * * 2375 0 0 Y 53 * 2778 * * 4582 * 2163 * * 4363 * * * * 4133 * * 3006 * 1478 53 0 * * * * * 0 2246 0 1000 L 54 * * * * * * * * * 347 * * * * * * * 2225 * * 54 0 * * * * * 0 2246 0 1000 G 55 * * * * * 192 3006 * * * * * * * * * * * * * 55 0 * * * * * 0 2246 0 1000 R 56 * * * * * 1729 * * * * * * * * 518 * * * * * 56 0 * * * * * 0 2246 0 1000 S 57 * * * * * * * * * 4332 * * 848 * * 1688 * * * 3569 57 0 * * * * * 0 2246 0 1000 A 58 2401 * * 2710 * * * * * 4035 * * 2134 1439 * * * * * * 58 0 * * * * * 0 2246 0 1000 E 59 * * 4047 993 * * * * 4363 * * 2754 * 4273 * * 2406 * * * 59 0 * * * * * 0 2246 0 1000 P 60 3176 * * * * * * * * * * 3006 542 * * * 3681 * * * 60 0 * * * * * 0 2246 0 1000 V 61 2847 4040 4273 * * 2462 * * * * * 3006 3229 * * * * 1574 * * 61 0 * * * * 0 * 2246 0 1000 P 62 * 3725 2024 * * * 4307 4059 * 4140 * * 1109 * * 4394 * * * * 62 0 * * * * * * 2392 0 0 L 63 * * * * 4738 * * * * 1119 * * * * * * * 994 * * 63 0 * * * * * * 2392 0 0 Q 64 3970 * 1369 2774 * * * * * * * * 4713 1910 * 3342 * * * * 64 0 * * * * * * 2392 0 0 T 65 * * * * * * * 3265 * 405 * * * 3342 * * 4564 * * * 65 0 * * * * * * 2392 0 0 V 66 * * * * * * * 3342 * * * * 219 * * * * 4564 * * 66 65 * 4497 * * * * 2392 0 0 D 67 * * 732 * * * * * * * * * 1329 * * * * * * * 67 921 * 1084 * * * 0 2388 0 1000 E 68 * * * 2371 * * * * * 1306 * 2135 * 2518 * * * * * * 68 0 * * * * * 0 1955 0 1640 M 69 * * * 2299 * * * * * 2135 2371 * * * 2518 2313 * * * * 69 277 * 2518 * * * 0 1955 0 1640 T 70 1992 * * * * * * * 1035 * * * * * * * 1939 * * * 70 0 * * * * * 0 1898 0 1629 K 71 * * * * * * * * 1939 1035 * * * 1992 * * * * * * 71 0 * * * * 2761 230 1898 0 1629 K 72 * * * 1350 * * * * 2213 * * * * * * 2353 2350 * * * 72 0 * * * * 247 2671 1975 0 1576 F 73 * * * * 3342 * * 2124 * 573 * * * * * * * * * * 73 0 * * * * * 0 2144 0 1000 G 74 3325 * 2059 1758 * 1974 * * 3185 * * * * * * * * * * * 74 0 * * * * * 0 2144 0 1000 T 75 * * * * * * * * 2605 * * * 2253 2021 1832 * 3342 * * * 75 0 * * * * 0 * 2144 0 1000 L 76 * * * * * * * * * 0 * * * * * * * * * * 76 0 * * * * * * 2156 0 0 T 77 * * 3423 * * * 3652 * * * * 4071 * * 3772 2693 1831 1950 * * 77 0 * * * * * * 2156 0 0 I 78 3269 * * * * * * 1643 * 796 * * * * * * * * * * 78 0 * * * * * * 2156 0 0 D 79 * * 374 3830 * * * * * * * 3854 * 3490 * * * * * * 79 0 * * * * * * 1917 0 0 C 80 * 0 * * * * * * * * * * * * * * * * * * 80 0 * * 0 * * * 1553 0 0 //