HHsearch 1.5 NAME c8qw9E_ FAM FILE c8qw9E_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8qw9E_.a3m DATE Sat May 3 10:51:51 2025 LENG 78 match states, 78 columns in multiple alignment FILT 52 out of 54 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4160 0.0580 SEQ >ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHEEECC >ss_conf 955676424556567887878886459823673688748999999999739996899997799978887756447739 >Consensus erxtxpxLTkfExARIiGxRAlQisxgApxxixxxxxxdplxIAxxElxxxxiPxxIrRxlPxGxyEdxxvxeLxixx >c8qw9E_ KRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD >UniRef50_Q9YDJ9(2-77:89) DNA-directed RNA polymerase subunit K n=1 Tax=Aeropyrum pernix RepID=RPOK_AERPE E=2e-19 s/c=1.27 id=43% cov=96% -KIGPPYLTKYERARIIGVRAFQLSIGAPPLVDPEraGSRNPLDIARYEVDNGILPVSIYRYLPGGGGQSLSLSRLV--- >UniRef50_B8D5H9(10-85:106) DNA-directed RNA polymerase subunit K n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D5H9_DESK1 E=1e-10 s/c=0.88 id=36% cov=96% EEVFSKRLTRFEIARVVGARALQLSMGAPPIIDVSNLpvKDPVYIAVNELITGLLPMSIRR-INNGREELVPVGKLL--- >UniRef50_P0C9D6(68-147:151) DNA-directed RNA polymerase subunit 6 homolog n=8 Tax=African swine fever virus RepID=RPB6_ASFM2 E=7e-07 s/c=0.69 id=36% cov=97% ERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRcikVTPEGQkiVEIWNPREMGI-- >UniRef50_D2TEV8(6-74:81) Putative RNA polymerase Rpb6 n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEV8_9VIRU E=2e-05 s/c=0.73 id=30% cov=90% ---TSSYLTRFELARLAGIVELQLQDNKTSVIDSSKTLH--DQAVDIVLNKETDIVIRRILPGDSYEDVSLKTL---- >UniRef50_Q387N1(27-122:131) DNA-directed RNA polymerase subunit, putative n=4 Tax=Trypanosoma RepID=Q387N1_9TRYP E=4e-16 s/c=0.89 id=40% cov=99% DRKSSVYLTKYEVARIIGERARQIVNGTSVLLDSQNgcgtgnslelaegcadpfaaSVDPIHITKLELLQGRIPMIVRRTWPDGRTENIPVNELKV-- >UniRef50_A6UVZ8(4-55:61) RNA polymerase Rpb6 n=7 Tax=Methanococcus RepID=A6UVZ8_META3 E=1e-08 s/c=1.18 id=45% cov=68% --------TKFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPL----------------- >UniRef50_B1L6H7(6-66:84) DNA-directed RNA polymerase, subunit K n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6H7_KORCO E=4e-08 s/c=0.97 id=41% cov=74% --LGPKRLTKFEKVRIISVRAQQIATGSPLFLEeneiPEGLTDPIELAKLELEKGKLPILIGR------------------- >UniRef50_Q5UQ32(186-262:396) DNA-directed RNA polymerase subunit 6 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO6_MIMIV E=9e-21 s/c=1.31 id=40% cov=100% ERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHLPGKKYEDWRIDELGMI- >UniRef50_Q6W391(95-166:168) Predicted DNA-directed RNA polymerase IIb n=2 Tax=Archaea RepID=Q6W391_9CREN E=3e-16 s/c=1.20 id=44% cov=92% --VGPITLTRFEKARIMGARALQLSLGAPVFVEIpKNTTTSLQIAMEELKKRVIPIVIKRTLPNQDYQNIPLDK----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * 2676 884 * * * * 1896 * * * * 4917 * * * * * * 1 0 * * * * * * 3014 0 0 R 2 * * * 4139 * * 5362 * 2618 * * * * * 403 * * * * * 2 0 * * * * * * 3131 0 0 I 3 * * * 3591 4231 * * 1547 3144 3806 5422 * * 5721 3813 5203 3767 3026 * * 3 0 * * * * * * 3326 0 0 T 4 * * * * 4104 2396 * * * * * * * * * 2913 692 * * * 4 0 * * * * * * 3424 0 0 T 5 5472 * 3870 * * 4529 * * * 4412 * * 1515 * * 2009 2520 * * 4442 5 0 * * * * * * 3484 0 0 P 6 * * * 5558 5546 * * 5413 3222 4529 * 4253 869 * 3536 3990 * 4869 * * 6 0 * * * * * * 3484 0 0 Y 7 * * * * 3219 * 5325 3108 3982 * * * * * 2618 * 4476 3870 5485 1359 7 0 * * * * * * 3433 0 0 M 8 * * * * * * * 3587 * 437 2644 * * * * * * * * 5790 8 0 * * * * * * 3383 0 0 T 9 * * * * * * * * * * * * * * * 4926 48 * * * 9 0 * * * * * * 3386 0 0 K 10 * * * * * * * * 776 * * * * * 1792 5587 4586 * * 3950 10 0 * * * * * * 3428 0 0 Y 11 * * * * 953 * * * * * * * * * * * * * * 1049 11 0 * * * * * * 3428 0 0 E 12 * * * 0 * * * * * * * * * * * * * * * * 12 0 * * * * * * 3428 0 0 R 13 4586 * * * 5097 * * 2762 1560 3962 * * * 5430 1890 * 5815 3887 * * 13 0 * * * * * * 3428 0 0 A 14 216 * * * * * * * * * * * * * * * 4586 3361 * * 14 0 * * * * * * 3428 0 0 R 15 * * * * * * 5428 * 4084 * * * * * 153 * * 5784 * * 15 0 * * * * * * 3428 0 0 V 16 * * * * * * * 712 * 2356 * * * * * * * 2364 * * 16 0 * * * * * * 3428 0 0 L 17 3962 * * * * * * 1365 * 1433 4340 * * * * * * 2969 * * 17 12 * 6959 * * * * 3428 0 0 G 18 3815 * * * * 242 * * * * * * * * * 3585 * * * * 18 0 * * * * * 0 3429 0 1000 T 19 1585 * * 3882 * * * 3373 * * * * * * * 4550 1888 2400 * * 19 0 * * * * * 0 3429 0 1000 R 20 * * * * * * * * * * * * * * 96 * * 3961 * * 20 0 * * * * * 0 3429 0 1000 A 21 195 * * 3961 * * * * * * * * * * * 4924 5093 * * * 21 0 * * * * * 0 3429 0 1000 L 22 * * * * 5391 * * 5738 3894 649 5894 * * 2960 4064 * 5383 * * 5425 22 0 * * * * * 0 3429 0 1000 Q 23 * * * * * * * * * * * * * 0 * * * * * * 23 0 * * * * * 0 3429 0 1000 I 24 * * * * 3947 * * 856 * 1386 * * * * * * * * * * 24 0 * * * * * 0 3429 0 1000 A 25 1773 * * * * * * * * * 5093 3947 * 3961 * 948 * 5035 * * 25 0 * * * * * 0 3429 0 1000 M 26 5383 * 3008 * * * * 3566 5859 3354 1373 3694 * 6021 * 3831 5514 * * 3617 26 0 * * * * * 0 3429 0 1000 C 27 * 5458 * * * 496 * * * * * 1898 * * * * * * * * 27 0 * * * * * 0 3429 0 1000 A 28 360 * * * * 4582 * * 3961 * * 5062 * * * 4197 5035 * * * 28 49 4906 * 0 * * 0 3429 1000 1000 P 29 4743 * * * 5023 * * * 4315 6008 * * 643 5808 5842 3425 3961 * * 4924 29 0 * * * * 0 * 3429 0 1000 V 30 3304 * * * * * * 3370 * 3707 4749 * 1726 * * 3962 4586 1835 * * 30 29 5653 * 0 * * * 3428 1000 0 M 31 * * * * 3078 * 5430 3775 * 1456 2909 * * 5905 * 4749 2864 3962 * 4948 31 27 5743 * 3000 193 * * 3428 1000 0 V 32 * * 5653 * * * * 1320 4909 2932 * * * * * * 6026 1322 * * 32 0 * * * * * * 3428 0 0 E 33 * * 1471 1988 * 4909 * 5653 3176 * * 4529 2821 6022 * * 5430 * * * 33 124 5518 4046 2000 415 * * 3428 1000 0 L 34 * * 5995 * * 3797 * 2254 * 2497 * 5667 3288 * * 2739 3145 2830 * * 34 19 6219 * 0 * 0 * 3312 1000 1602 E 35 * * 3363 2047 * 4647 * * 2729 * * 4545 3557 4084 * 2535 3657 4991 * * 35 194 3192 5917 1120 890 * * 3428 2060 0 G 36 5918 4935 4826 2832 * 1371 * * 2371 * * 3307 * * * 4738 4733 5715 * * 36 171 3990 4349 3232 162 0 * 3386 1746 1000 E 37 * * 4314 2239 * 3472 5395 5543 3563 3710 6226 * * 4658 6033 2610 2580 * * 4565 37 182 3080 * 3083 181 0 * 3411 2230 1600 T 38 3803 * 5024 * * * * 4237 5650 2855 3950 5539 * * 4577 2461 1864 3293 * * 38 96 4978 4928 0 * * * 3428 1515 0 D 39 * * 703 5838 * * 2915 * * * * 4381 * * 5597 3179 4444 * * 6572 39 132 5597 3906 0 * 0 * 3391 1000 1000 P 40 4612 * * * * 4955 * * * * * * 378 * * 2993 * 4984 * * 40 0 * * * * * 0 3264 0 1000 L 41 3861 * * * * * * 1933 * 1066 5425 * * * * * * 2570 * * 41 47 * 4955 * * 0 * 3264 0 1000 L 42 4106 * 1796 3806 * 6063 5033 4950 3345 3383 4745 4631 * 3690 4578 4977 5993 4473 * 5581 42 0 * * * * 0 * 3364 0 1000 I 43 5138 * * * * * * 478 * 4473 3295 * * 3962 * * * 4561 * * 43 0 * * * * * * 3428 0 0 A 44 76 * * * * * * * * * * * * * * 5599 5036 * * * 44 0 * * * * * * 3426 0 0 M 45 5879 * * 2706 3403 * * 4414 2808 3979 2518 5413 * 5811 3281 6017 5736 3568 6389 4925 45 0 * * * * * * 3426 0 0 K 46 6243 * 3958 1927 * 5908 * 5648 2204 3538 5413 4299 * 4068 4476 * * 3651 * 4029 46 0 * * * * * * 3426 0 0 E 47 * * 4747 155 * * * 3958 * * * * * * * * * * * * 47 0 * * * * * * 3426 0 0 L 48 * * * * 2633 * * 4925 * 576 * * * * * * * 3500 * 4416 48 0 * * * * * * 3426 0 0 K 49 4532 * 4059 2547 4580 * 5530 5647 2226 2921 * 5227 * 6514 3210 4984 3938 5239 * 5191 49 0 * * * * * * 3426 0 0 A 50 2606 * * 3229 * * * * 3348 4869 * 2358 * 1981 3224 5555 5647 * * * 50 0 * * * * * * 3426 0 0 R 51 * * 5719 * * 1409 * * 1688 * * 3156 * * 2458 * * * * * 51 0 * * * * * * 3426 0 0 K 52 4634 * * 3958 * * * 3500 1364 3034 3938 * * * 4097 5530 6389 2845 * * 52 0 * * * * * * 3426 0 0 I 53 * * * * * * * 947 * 1912 5843 * * * * * 2772 4268 * * 53 0 * * * * * * 3426 0 0 P 54 * * 3605 * * * * * * * * * 295 * 4747 3938 * * * * 54 0 * * * * * * 3426 0 0 I 55 * * * * 2036 * * 1390 * 1989 3342 * * * * * * 5380 * * 55 0 * * * * * * 3426 0 0 I 56 * * 4788 * * * * 1390 3417 3183 * * * * * 3938 2263 3251 * * 56 0 * * * * * * 3426 0 0 I 57 * * * * * * * 945 * 5530 * * 4925 * * * * 1232 * * 57 0 * * * * * * 3426 0 0 R 58 * * * * * 5487 * 3455 2907 * 4580 * * * 613 * * 4908 * 5380 58 0 * * * * * * 3426 0 0 R 59 * * * * * * * * 5007 * * * * * 46 * * * * * 59 114 4280 5337 1585 585 * * 3419 1000 0 Y 60 * * * 5092 5104 * 3336 3546 5173 * * * 5023 * 2714 * 3697 2831 5212 1730 60 0 * * * * 0 * 3483 0 1000 L 61 * * * * 3868 * * 5026 * 643 5146 * * * * * 3174 * 3337 5485 61 0 * * * * * * 3498 0 0 P 62 * * * * * * * * * * * 4972 170 4846 * 4489 * * * * 62 0 * * * * * * 3471 0 0 D 63 * * 1391 3656 * 2537 * * * * * 1589 * * * 4846 * * * * 63 0 * * * * * * 3471 0 0 G 64 * * 3952 * * 399 5971 * 3183 * * * * 5401 * 5182 * * * * 64 0 * * * * * * 3471 0 0 S 65 4550 * 3809 5568 * 4839 * * 1996 * 5884 5347 * 3761 3555 1729 4011 * 6025 * 65 76 4286 * 1000 1000 * * 3471 1000 0 Y 66 * * * 3893 3438 4842 6332 5102 * * * * * * 4634 * 3985 2669 * 990 66 0 * * * * * * 3437 0 0 E 67 * * * 396 * * * * * * 5089 * * 2884 * * * 3732 * * 67 0 * * * * * * 3437 0 0 D 68 * * 898 3849 * * * 4195 * 2970 * 3247 * * 5089 4842 4561 * * * 68 0 * * * * * * 3437 0 0 W 69 * * * * 4502 * * 1908 * 4842 * * * * * * * 2717 1113 4634 69 0 * * * * * * 3437 0 0 G 70 3836 * * 5346 4502 6152 5940 * 3088 * * 4195 1941 * 3296 2055 4166 * * * 70 0 * * * * * * 3437 0 0 V 71 * 6018 * * * * * 2313 * 1624 * * 4195 * * * 5939 1366 * * 71 0 * * * * * * 3437 0 0 D 72 6331 * 1719 3988 * 4951 * * 2619 * 5008 3144 * 4629 3577 3143 * * 4502 * 72 0 * * * * * * 3437 0 0 E 73 * 4790 * 552 * * * * 2932 * * * * 5887 4756 * 3931 * * 4986 73 0 * * * * * * 3424 0 0 L 74 * * * * * * * 3900 * 193 4097 * * * * * * * * * 74 0 * * * * * * 3395 0 0 I 75 * * * 3545 * 2806 4699 1843 4274 2561 3125 * * 5441 * 5386 * 3810 * * 75 0 * * * * * * 3122 0 0 I 76 * * * * * * * 1437 * 4435 2967 * * * 4292 * * 1302 * * 76 0 * * * * * * 2770 0 0 T 77 3233 * * * * * * 1147 * 1977 * * * * * * 3451 3370 * * 77 0 * * * * * * 2164 0 0 D 78 * * 255 * * * * * * * * 2628 * * * * * * * * 78 0 * * 0 * * * 1904 0 0 //