HHsearch 1.5 NAME c8kcyB_ FAM FILE c8kcyB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8kcyB_.a3m DATE Sat Mar 8 09:46:25 2025 LENG 85 match states, 85 columns in multiple alignment FILT 100 out of 443 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.4091 -0.5252 SEQ >ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC >ss_conf 9743401321475589999999840543009999999999999999999999999986399734899999999981887888899 >Consensus xxxxxxxxxxxixkxxIxrixkxxgxxrisxdaxxxlxxxxexfixxixxxAxxxaxhxkRkTixxxDVxxaLxxxgxxxyGfxx >c8kcyB_ HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG >UniRef50_B3L5R9(1010-1107:1192) Ccaat-box dna binding protein subunit b,putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L5R9_PLAKH E=2e-08 s/c=0.61 id=18% cov=98% -KKIKPDSETLLPIANISRIMKRIlpASAKVAKESKDIIRECVTEFIQFLTSEvsekggqthASDRCVRERRKTISGEDILFSMEKLGfndyvEPLYKY- - >UniRef50_C4R5Y2(271-340:387) Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R5Y2_PICPG E=1e-06 s/c=0.78 id=23% cov=82% -----------LPKSMILKMVKfKTGRTTIGPNLYPTLQSISDDFFTQVSEDLCRYAEHGRRSMVNFTDIQLLTQRINKNL----- >UniRef50_P84243(53-135:136) Histone H3.3 n=3545 Tax=Eukaryota RepID=H33_HUMAN E=2e-11 s/c=0.85 id=22% cov=93% -RRYQKSTELLIRKLPFQRLVREIAQDfktdlRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER------ >UniRef50_B9H0G6(44-118:394) Predicted protein n=5 Tax=rosids RepID=B9H0G6_POPTR E=9e-08 s/c=0.78 id=22% cov=89% ---------RAIGKIAVAQMCESMGFQSFQQSALETLTDVTTWYIRNIGKAAQLCANLAGRTEGNVFDVIQGLEELGLP-QGFAG >UniRef50_B3RYW1(29-105:450) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RYW1_TRIAD E=8e-07 s/c=0.71 id=19% cov=88% -----------LSLSTMKQWADQLGFGEVNDEVAALLSEDASYRIRHLIQVASEVMIHSKRTRMMTDDVNKAAKLcRLESIYGING >UniRef50_Q6CJD7(35-109:216) DNA polymerase epsilon subunit D n=1 Tax=Kluyveromyces lactis RepID=DPB4_KLULA E=0.0001 s/c=0.64 id=19% cov=86% -----KSIITSLAKESLQNAFQKGEEERritVSKDAALAMQRSATVFVNHLLMFARMNAKDSNRKSCNDQDIMAALDTLG-------- >UniRef50_P49905(86-166:196) Transcription initiation factor TFIID subunit 12 n=16 Tax=Diptera RepID=TAF12_DROME E=9e-08 s/c=0.71 id=22% cov=87% -----------LTKPRLTELVREVDtTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDVQLHFERKyNMWIPGFG- >UniRef50_B9GVA9(82-151:234) Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GVA9_POPTR E=1e-07 s/c=0.82 id=22% cov=69% ----------------IKRVMKSdGDVKMISAETPILFSKACELFILELTLRSWLQTASCKRRTLQRCDISRVIR----------- >UniRef50_Q8SSG3(14-88:128) Histone H2A n=1 Tax=Encephalitozoon cuniculi RepID=H2A_ENCCU E=0.0009 s/c=0.60 id=14% cov=68% ----------------IKKIMKDRTRMRISKDALVAVSACVMYLISEITDGAKNVASTDGKKKVMPKHINNAI------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 1132 * * * * * * 2000 * * * * * 1767 1 0 * * * * * * 2608 0 0 R 2 * * * * * * * * 1241 * * * * * 793 * * * * * 2 0 * * * * * * 3920 0 0 K 3 * * * 3129 * * * * 989 * * * * * 1389 * * * * * 3 129 * 3550 * * * * 4145 0 0 V 4 * * * * * * * 1636 * 2385 3391 * * * * * * 3280 * 1794 4 0 * * * * 0 * 4002 0 1000 L 5 * * * * * * * * 3430 2570 * * * 1655 * 1247 * * * * 5 0 * * * * * * 4374 0 0 R 6 * * * * * * * * 1201 * * * 2934 * 1618 3203 * * * * 6 0 * * * * * * 5163 0 0 D 7 * * 1159 3248 * * 2880 * * * * * * * * 1684 * * * * 7 0 * * * * * * 5672 0 0 N 8 3178 * * 4121 4090 3553 4288 2863 4227 4497 * 3005 * * * 2571 3198 * * * 8 0 * * * * * * 5792 0 0 I 9 4310 * * 1953 * * * 1728 * * * 4632 4154 * 4738 4555 4664 2528 * * 9 66 * 4473 * * * * 5887 0 0 Q 10 4937 * 4804 3733 * * * * 5017 3025 4765 3458 4734 2128 2752 4804 3686 * * 4422 10 102 3868 * 2142 371 * 0 6121 1368 1000 G 11 2816 * * * 4595 2451 * 4551 3068 2633 * * * * 3997 2723 * 3372 * * 11 0 * * * * 0 * 6186 0 1000 I 12 * * * * * * * 1086 * 1104 * * * * * * * 3975 * * 12 0 * * * * * * 6786 0 0 T 13 3431 * * * * 5443 * * 4238 5080 * 5211 1439 * 5762 2316 2971 4078 * * 13 35 * 5391 * * * * 6798 0 0 K 14 4629 * * 5918 * * * 5723 625 2926 * 5406 5886 5678 4443 4706 * * * * 14 0 * * * * * 0 6777 0 1000 P 15 2219 * 5332 2828 * * 5366 3816 3714 3575 * 5242 3656 5213 * 2552 4034 * * * 15 0 * * * * 0 * 6777 0 1000 A 16 3003 4567 * * 4071 * * 3957 3791 4691 4675 4135 3189 * 3912 2612 2823 * * 5558 16 0 * * * * * * 6954 0 0 I 17 4729 * * * 3977 * * 1049 * 2847 5057 * * * * * * 2021 * * 17 0 * * * * * * 7177 0 0 R 18 3528 6178 5503 4436 * 5795 * * 1869 4121 * 5382 * 2591 2518 4310 3899 * * * 18 0 * * * * * * 7177 0 0 R 19 * * 3857 3976 * * * * 2712 5748 * 5469 * 2893 1163 4793 * 4147 * * 19 28 5693 * 0 * * * 7187 1000 0 L 20 5478 * 5727 * 3407 * * 1612 * 1577 3524 * * * * * * 3643 5890 5772 20 23 6011 * 2000 415 * * 7209 1000 0 A 21 1395 4833 * 5727 4707 * * 4231 * 2732 2773 * * * * * * 2493 * * 21 0 * * * * * * 7209 0 0 R 22 6081 * 5890 2947 * * * * 1644 4224 5478 4309 * 3166 2095 5194 5684 * * * 22 83 4159 * 1122 888 * * 7209 2744 0 R 23 4707 * 4624 2708 * 4059 4647 5067 3246 * * 4251 * 4340 2753 2129 * 4818 * 5737 23 100 3901 * 866 1148 * * 7209 2625 0 G 24 2346 5667 5094 5080 4936 3197 5081 3294 6096 4206 5856 5698 * * 5756 3336 4104 2912 * 4733 24 94 3983 * 1000 1000 * * 7229 2451 0 G 25 3697 * 3648 4790 * 988 * 5988 * 4531 * 5551 5778 5636 * 3285 3917 6030 * * 25 42 5139 * 0 * * * 7252 1251 0 V 26 3730 4553 4267 4465 3431 5159 * 3192 4303 5802 6152 5328 4126 4348 4419 3402 6098 2609 * 5583 26 0 * * * * * * 7346 0 0 K 27 3717 * 3575 3175 * 4435 5875 5748 2313 * 4270 5055 * 4135 4240 4343 2744 4161 * * 27 153 3316 * 2081 389 * * 7420 2961 0 R 28 * * 4428 5335 * 5088 * 6737 2285 * 4763 3826 6628 4607 1253 3840 5425 * * 6212 28 57 4691 * 1293 756 * * 7487 2418 0 I 29 4959 * * * 3623 * * 1229 * 2997 4134 * * * * 5551 * 2102 5402 * 29 15 6590 * 1000 1000 * * 7490 1000 0 S 30 3838 * 4662 4173 * 4938 * * 5260 * * 4434 5400 3362 5575 1021 3387 * * * 30 18 6332 * 2322 322 * * 7507 1000 0 G 31 3144 6311 2674 4180 * 4089 * * 1753 * * 4575 3922 5191 4487 3488 5678 5760 * * 31 0 * * * * * * 7507 0 0 L 32 3882 * 1554 1759 * 4163 * * 6353 5387 6660 4693 * * 4673 4022 4622 6136 * * 32 0 * * * * * * 7507 0 0 I 33 991 3796 * * 6413 6634 * 3887 * 5429 6192 * * * * 3250 4938 2636 * * 33 0 * * * * * * 7507 0 0 Y 34 3391 * * 4070 6473 * * 3772 2958 2186 5735 * 4178 6216 3825 4927 6665 3291 * 3193 34 0 * * * * * * 7507 0 0 E 35 3557 6049 2699 1867 * 5895 * 4122 3686 4008 6829 6194 5015 4522 5012 4007 4993 4789 * * 35 0 * * * * * * 7504 0 0 E 36 2171 5580 * 2642 6391 6395 * 3674 5327 2352 4647 6672 * 6150 * 4527 3503 4183 * 5415 36 0 * * * * * * 7504 0 0 T 37 5302 * * * 3574 * * 1896 * 1418 3941 * * * * * 4744 2938 * 6072 37 0 * * * * * * 7528 0 0 R 38 2674 5552 6171 4951 6812 6755 4707 * 6356 3440 6990 4035 * 1999 3518 2805 4612 5346 * * 38 0 * * * * * * 7528 0 0 G 39 5443 * 3084 2017 * 6542 6847 * 2624 5008 * 3689 6089 3753 3104 4581 4367 6278 * 6216 39 0 * * * * * * 7528 0 0 V 40 2215 2459 3988 5174 4991 * 4991 3625 4837 4158 5302 * * 4851 * 3327 6620 3722 * 4992 40 0 * * * * * * 7528 0 0 L 41 1950 3172 * * 4273 5575 * 3320 * 3521 5936 * * * * 3175 3924 2605 * 6279 41 0 * * * * * * 7528 0 0 K 42 6521 6072 3046 1411 * 6805 6478 6756 4304 5780 6506 4519 * 6600 5771 3120 3199 3800 * * 42 0 * * * * * * 7528 0 0 V 43 4046 6478 3474 1861 5773 * 6382 4068 4359 3424 4896 6265 * 4735 4812 5649 6697 3769 5106 3653 43 0 * * * * * * 7528 0 0 F 44 5244 * 6687 6403 895 * 5227 4942 5890 3907 6738 * * * 3773 6320 6734 * 6061 2715 44 0 * * * * * * 7596 0 0 L 45 4721 6255 * * 3683 * * 1573 * 2029 4655 * * * * 6181 6190 2248 * 6357 45 0 * * * * * * 7599 0 0 E 46 4507 5918 3635 3120 * 3797 4263 5215 3200 3623 * 5483 * 4713 3092 3738 3311 4335 * * 46 0 * * * * * * 7599 0 0 N 47 4789 5713 3740 2177 3837 6991 3918 4318 3886 5475 5178 4221 * 3058 4301 4583 6405 6181 * 4468 47 0 * * * * * * 7599 0 0 V 48 5771 6058 * 6300 6587 * * 1835 * 1411 5271 * * 6573 5481 * 5612 2265 * * 48 0 * * * * * * 7599 0 0 I 49 2731 5343 * * 3562 3695 * 4241 5777 3003 3888 * * * * 2984 2539 3310 * * 49 0 * * * * * * 7599 0 0 R 50 4352 6029 3846 2578 7024 4043 6641 6214 3170 4728 6271 3909 * 3011 3710 3184 4480 6590 * 6295 50 0 * * * * * * 7599 0 0 D 51 4283 4766 2035 2578 4869 4457 5741 5899 3732 5897 6300 5420 * 3783 3364 5446 4462 5714 * * 51 10 7184 * 3170 170 * * 7599 1000 0 A 52 851 5479 * * * 5914 * 6370 * 3607 5757 * * * * 2218 4039 5777 * * 52 0 * * * * * * 7599 0 0 V 53 3455 4180 * 5233 5739 4482 5141 4660 3912 4171 5474 3027 * 4600 4725 2757 3999 4112 4318 5007 53 0 * * * * * * 7599 0 0 T 54 3618 * 3801 3038 * 6405 * 3395 2687 3262 3654 5671 * 3746 4113 6517 4626 4119 * 5769 54 0 * * * * * * 7599 0 0 Y 55 4333 4019 * 6181 2681 6659 4849 3073 5230 2951 4140 4933 * 6400 5450 5062 * 3463 * 2693 55 0 * * * * * * 7599 0 0 T 56 1215 2844 * * * * * * * 6659 2964 * 6239 6122 * 3370 2742 5777 * * 56 0 * * * * * * 7599 0 0 E 57 4504 * 5579 2774 6209 * 5240 4006 2391 5183 6609 4928 * 3574 2978 3897 3711 4292 * 5649 57 16 6516 * 2322 322 * * 7599 1000 0 H 58 4131 5777 4929 4508 * 5137 1101 * 4239 4669 6641 4090 * 5159 4736 4140 6506 * * 4079 58 0 * * * * * * 7599 0 0 A 59 2102 6400 3657 3542 6405 3137 5981 * * * * 3278 * 5213 2951 2490 6439 * * * 59 19 6239 * 1000 1000 * * 7599 1000 0 K 60 * 6238 5850 * * 2467 3925 * 1247 * * 3209 * 5388 3116 4210 * * * * 60 0 * * * * * * 7599 0 0 R 61 5101 * * * * * 5513 * 3135 * * * * * 380 4274 * 6058 * * 61 0 * * * * * * 7599 0 0 K 62 6295 * 5431 * * 6824 6239 5871 1290 5667 6736 4805 6122 4093 2892 3943 3329 3664 * * 62 0 * * * * * * 7599 0 0 T 63 6875 * * 4618 * * * 4851 3748 4984 5334 5757 * 4644 4636 6271 627 5266 * * 63 0 * * * * * * 7599 0 0 V 64 * 5255 * * 5757 6335 * 1493 * 1836 4893 * * * * 6050 * 1951 * * 64 0 * * * * * * 7599 0 0 T 65 4896 * 3614 3289 * * 6609 * 3591 5283 3891 3284 * 3796 4512 3052 2029 * * 6372 65 0 * * * * * * 7599 0 0 A 66 3015 5763 6271 4838 4003 3304 6372 3783 4592 4850 4346 * 2906 * 4207 5686 3409 3006 * 6535 66 16 6516 * 1000 1000 * * 7599 1000 0 M 67 4473 6400 2770 2304 5286 5496 * 4896 3001 * 6537 5182 * 3278 3322 3482 4768 5627 * * 67 0 * * * * * * 7599 0 0 D 68 * * 203 * * * 3244 * * * * * * * * * 5286 * * * 68 0 * * * * * * 7599 0 0 V 69 * * * * 5199 * * 1515 * 3497 3238 * * * * * * 1223 * * 69 15 * 6615 * * * * 7597 0 0 V 70 4404 6871 4801 3915 5505 * * 2875 3391 2230 4826 3302 * 3341 5128 4806 5848 4101 * * 70 0 * * * * 0 * 7558 0 1000 Y 71 4461 5849 6232 4633 5493 5005 4633 * 3560 2121 5906 3729 * 3364 3585 4188 4800 4570 5716 4296 71 0 * * * * * * 7565 0 0 A 72 845 5250 * * 6041 3997 4594 5651 * 4017 * * * * * 3365 * 3380 * 5437 72 34 6360 6498 0 * * * 7563 1000 0 L 73 5037 5737 * 6143 4509 * * 3173 * 822 3393 * * * 5033 5243 6200 5401 5223 * 73 31 5556 * 1003 997 * 0 7521 1741 1000 K 74 3945 * 4079 2402 6824 6277 6677 * 2036 * * 5772 * 2806 2435 3940 * * * * 74 68 4801 6652 0 * 0 * 7396 1728 1000 R 75 3727 6529 3708 3479 * * 5360 4636 3647 4132 6321 5987 * 4943 1388 4911 5821 4262 * * 75 31 5536 * 0 * * 0 7350 1492 1000 Q 76 * 6048 * * 4633 4776 * 3304 3790 1732 4109 4259 * 2921 3258 * 6095 5285 * 4429 76 88 4086 * 0 * * 0 7180 1642 1000 G 77 5632 * 4628 * * 597 * 5965 * 4787 * 2588 * 5601 * * * 4681 * * 77 202 3255 5274 1185 836 0 * 6948 2803 1000 R 78 * * 4546 2230 3074 * 5477 3170 4170 2940 3645 5344 * * 3330 5238 5062 5746 * 5213 78 69 4427 * 0 * 0 * 6821 1529 1000 T 79 4272 * 3703 3931 * 5750 * 4263 3698 * 5183 3003 2113 5708 3511 3337 5318 * 4510 * 79 35 * 5375 * * * * 6738 0 0 L 80 5628 * 3740 3929 * * 5264 2432 * 1966 4668 * * 4728 * 4304 * 3794 * 2539 80 51 4861 * 2000 415 0 * 6707 1000 1000 Y 81 * * * * 2560 * 5116 4236 * * * * 3603 4180 * * * * * 711 81 0 * * * * * * 6606 0 0 G 82 * * 3564 5039 * 325 * * 4600 * * * * * * 4448 * * * * 82 0 * * * * * * 6041 0 0 F 83 * * * * 795 * * 4751 * * * * * * * * * * * 1371 83 0 * * * * * * 5695 0 0 G 84 3533 * * 3069 * 976 * * 3547 * * 3140 * * * 3524 * * * * 84 0 * * * * * * 4003 0 0 G 85 * * * * * 0 * * * * * * * * * * * * * * 85 0 * * 0 * * * 3100 0 0 //