HHsearch 1.5 NAME c8jjrU_ FAM FILE c8jjrU_ COM /bmm/www/servers/phyre2/HH/hhmake -i c8jjrU_.a3m DATE Sat May 18 08:40:58 2024 LENG 104 match states, 104 columns in multiple alignment FILT 105 out of 392 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.3 EVD 0.4438 -0.1301 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSCSBGGGTBCTTTSCSSTHHHHHSCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH HHHC >sa_dssp EEDEEEECEDCBDDBDEBCECCEDCDDCEEECEEEDDCEEEEBDCEEBDDCCDCEEDBCEECDDEDDEEDDEEEEEEEEDEDCBEEBDEBCEDBEDDDDD CEEE >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHCC >ss_conf 9606999999999979999986589998862147566664432122101378888730321213332201433679999996986338999999999999 8509 >Consensus sexxxxxReaElxHGRxAMLaxxGxlxxexxxxxxxxxxxxxxxxxxxxxxxxxxxxxpxxxxxxxxxxxxxxexxxxxkxkEikNGRLAMlAxxGxxxq xaxx >c8jjrU_ SETFRRRRISEIKNGRVAMIACMGYIAPEYFRWPGYCSPSTDLKFADIPNGIQALYKMPAEAWAQIGVFIAFLELFRRGLEAEINNGRLAMVAITGMISQ NAFF >UniRef50_Q2IA65(62-185:193) Chloroplast light harvesting protein isoform 14 n=1 Tax=Isochrysis galbana RepID=Q2IA65_ISOGA E=0.0002 s/c=0.38 id=27% cov=100% SFNLNYMREAELKHGRICMLAWVGYVavdngfyVPFAPHVSSLAAHDTAVKSGNMLLLLGAVGVIEALSYNAVnemmsgqtdrrpgdFSMDPFGQADKTM LEKEISHCRLAMFAFSGVVTQSAL- >UniRef50_B9HLM2(78-212:244) Light-harvesting complex I protein Lhca1 n=6 Tax=rosids RepID=B9HLM2_POPTR E=4e-16 s/c=0.64 id=27% cov=100% -ENLERYKESELIHCRWAMLAVPGILIPEALGLGNWVkaqewaaAPGGQATYLGQPVPWGTLPTVLAIEFVAIafvehqrsmekdpekkkypggafdpLG FSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAY >UniRef50_C0PRU3(103-233:249) Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=C0PRU3_PICSI E=4e-09 s/c=0.48 id=28% cov=97% --GLQRFRECELIHGRWAMLGVLGALAVEGFTgiywqdagkvelVEGSSYFGFSLPFNMSTLILIEVLLLGyiefqrnaevdpetrlyPGGKYFDPFGLA VDEIkKDRLKLAEIKHARLAMVAFLIFAIQAA-- >UniRef50_B8CGD3(120-267:377) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8CGD3_THAPS E=1e-07 s/c=0.39 id=25% cov=100% SETFDLYtmQEAEIRHARLAMLAVVGWPMSELLAPDWMLQNGCAPSVLNGVNPLsflaiagflgaagffefktslrsnvgtpmgkihekdmSAIWEFGVA GdynWDPLNLYSAAGNDFKGRKglrDVEISHGRMAMLGITYFAAWEAL- >UniRef50_Q5ENN0(148-261:478) Chloroplast light harvesting complex protein n=1 Tax=Heterocapsa triquetra RepID=Q5ENN0_HETTR E=7e-09 s/c=0.54 id=26% cov=81% ------LRESEIKHGRVCMLAFVGIVVQSIVQIPGYPQEPDWLNalsacyaskvptlglvqmsvffmlvegrYFPENAWIGQMDREPGdLGFDPLKLTKK PGFDLKKAQLQELKNGRL--------------- >UniRef50_A4QPK1(97-180:202) Chloroplast light-harvesting complex I protein Lhca3 (Fragment) n=1 Tax=Acetabularia acetabulum RepID=A4QPK1_ACEAT E=4e-08 s/c=0.71 id=23% cov=78% ------LKYAEIMNGRWAMLGAAGCIAPEFLGKLGAIPESTALIWwkSGVIPPAGDTDIYWGSSWTVFWVNACLMNFAELRRLQDYKN------------ ------ >UniRef50_B5YM25(59-180:201) Fucoxanthin chl a/c light-harvesting protein, major type n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B5YM25_THAPS E=4e-08 s/c=0.49 id=27% cov=96% --SFDKMRYAELKHGRVAQLAAWGYATTWSGaRFPGCEDFPAGHEAVLKIGTENLIPVLVVAGALEtlwkqkegsfpgdfsatsfpvgFGPFAKTEADMI DLRTKELNNGRAAMMGILGMIVHE--- >UniRef50_A9SH38(213-308:325) Early light-induced protein 8 n=6 Tax=Physcomitrella patens subsp. patens RepID=A9SH38_PHYPA E=8e-09 s/c=0.64 id=18% cov=90% ----------ETINGRLAMLGFVWALVGENATGLSVIDQVFSPGSTGLIWFLASVQIFTYASLVPIFNAkesTDARSFGPFTAKAERWNGRAAMIGFFSL IVTELF- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 2783 * * * * * * * * * * * * * * 511 2710 * * * 1 0 * * * * * * 3709 0 0 E 2 * * 1532 1063 5197 * * * * * * 5534 * 3603 4493 * * * * * 2 0 * * * * * * 5572 0 0 T 3 5730 * 5117 3951 * 3272 * * 3086 * * 2377 * 5225 4172 2877 2097 5515 * * 3 0 * * * * * * 5722 0 0 F 4 * * * * 1495 5009 * 3977 * 1439 3840 * * * * * * 4459 * 3905 4 64 4530 * 1000 1000 * * 5746 1566 0 R 5 2562 * 4232 3439 * 6078 * 5997 1892 4119 * 3804 * 3415 3636 4994 5998 * * 4836 5 0 * * * * * * 5864 0 0 R 6 * * 5637 * 5255 * * * 3181 5620 5536 3988 * 4756 1535 4721 * * 2497 2824 6 0 * * * * * * 5896 0 0 R 7 * * * * 3272 * * * * 1972 3210 4339 * 6381 6416 * * * 4678 1247 7 20 6154 * 1000 1000 * * 6153 1000 0 R 8 5445 * * 5350 * * 6056 * 4779 * * * * 2549 560 * * 4272 * * 8 0 * * * * * * 6166 0 0 I 9 3245 * 3701 899 * * 5726 4829 6363 * * 5643 * 4373 6452 5649 4881 4629 6647 5004 9 0 * * * * * * 6171 0 0 S 10 698 4570 * * * 6498 * 6497 * * 5425 * * 6964 5794 2538 6624 4048 * 5201 10 0 * * * * * * 6191 0 0 E 11 * * * 0 * * * * * * * * * * * * * * * * 11 0 * * * * * * 6315 0 0 I 12 * * * * * * * 1654 * 977 * * * * * * 4804 2856 * * 12 0 * * * * * * 6315 0 0 K 13 * * * * 5382 * * 2453 1325 4690 3232 * * 5791 5297 6464 3673 3680 * 4725 13 0 * * * * * * 6315 0 0 N 14 * * * * * * 306 * * * * 2389 * * * * * * * * 14 0 * * * * * * 6427 0 0 G 15 2710 3802 * * * 468 * * * * * * * * * 4246 * * * * 15 0 * * * * * * 6427 0 0 R 16 * * * * * * * * * * * * * * 0 * * * * * 16 0 * * * * * * 6427 0 0 V 17 4298 * * * 4010 * * 3051 * 2434 6684 * * 6329 * 6470 * 2137 1690 6555 17 0 * * * * * * 6427 0 0 A 18 164 3791 * * * 5765 * * * * * * * * * 6658 * 7143 * * 18 0 * * * * * * 6427 0 0 M 19 * * * * * * * 5897 * * 114 * * 4073 * * * * * * 19 0 * * * * * * 6427 0 0 I 20 4809 * * * * * * 5036 * 345 3291 * * * * * 6332 4979 * * 20 0 * * * * * * 6427 0 0 A 21 635 6172 * * * 1619 * * * * * * * * 5897 * * * * * 21 0 * * * * * * 6427 0 0 C 22 1930 5786 * * 2886 * * 4554 * 5160 6554 6470 * * * 4656 3671 1582 4662 * 22 0 * * * * * * 6427 0 0 M 23 2074 * * * * * * 4085 * 2613 6735 * 4639 * * * 3001 1496 6508 * 23 17 6378 * 2807 222 * * 6427 1000 0 G 24 5305 * * 5682 6338 212 5117 * * * * * * * * 5321 6178 * 6365 * 24 0 * * * * * * 6427 0 0 Y 25 2603 3180 * * 2815 * * 2444 6705 5077 5207 * * 6612 * 5682 4985 3740 3161 3555 25 15 6575 * 2000 415 * * 6427 1000 0 I 26 4828 4867 * * 4068 6378 * 2309 * 1479 6236 * 3939 * * * 6115 2513 5055 * 26 15 6600 * 2807 222 * * 6427 1000 0 A 27 2262 * * * 3871 4754 * 3149 * 2910 6329 * 5897 6678 * * 4107 1757 4396 * 27 0 * * * * * * 6427 0 0 P 28 4244 * 6575 7143 * 3843 5866 5207 * * * * 1585 2572 * 3993 2711 3341 * * 28 0 * * * * * * 6427 0 0 E 29 4887 * 3468 718 6600 5758 4679 * 4246 * * 5897 5682 4420 5638 6826 6329 * 5441 * 29 68 4753 6845 2808 222 * * 6427 2423 0 Y 30 2095 * 6326 * 3404 5181 * 2812 4499 2254 6328 4173 * 6632 6131 5570 5808 4027 * 4551 30 227 2777 * 2837 217 * 0 6429 4614 1000 F 31 4059 5639 6360 * 2383 3592 * 3281 * 1795 * * 5836 * * 6159 5751 3047 4038 6636 31 135 4029 5149 1198 826 0 * 6429 2851 1000 R 32 3462 * 6186 6614 * 1913 2900 6322 4842 5304 * 3856 7111 5249 2845 4944 3039 5865 * * 32 178 3257 6414 2794 225 * 0 6410 3647 1780 W 33 * * * * 2273 2914 5845 3373 3109 3124 5866 4828 5542 6333 5390 * 4255 4196 4289 4390 33 38 5247 * 3004 192 * 0 6395 1978 2137 P 34 4185 * 4064 4994 4796 2806 6883 4923 6347 4193 5659 5160 1389 4777 * 4638 4338 * 6525 * 34 14 6723 * 2807 222 458 1878 6395 1000 2137 G 35 4010 * 5130 4986 5079 1301 * 6483 5098 3682 6007 4018 4174 * * 3798 6623 4332 4941 5197 35 60 5569 5644 4027 91 * 0 6414 1631 1000 Y 36 3865 6429 4975 3768 3723 3872 * 4711 5287 3812 4171 5229 4489 4615 * 4436 6179 3987 2882 3194 36 26 5802 * 3759 111 * 0 6393 1585 1659 C 37 3322 6694 6679 4499 4046 5695 6733 3163 * 2298 5104 4895 6804 4152 6886 4175 4761 3067 4247 4991 37 11 7003 * 2807 222 * 0 6393 1000 1659 S 38 3381 5884 3218 4390 4810 3618 6258 * 3911 6283 5779 5635 3542 4221 5935 2565 4310 6586 4610 4121 38 11 7036 * 2322 322 753 1299 6393 1000 1659 P 39 2323 * 4562 4078 4540 3271 5729 * 5938 4015 6007 4662 2463 3435 * 5242 4490 5202 5755 6697 39 51 4855 * 2558 268 0 * 6414 2147 1000 S 40 3543 5788 4160 4554 4391 2236 6888 6707 * 5026 * 4748 2627 5739 * 3271 4428 3847 5056 5534 40 68 5130 5823 2235 345 * * 6427 2249 0 T 41 2634 6276 3403 2949 3841 2790 * 4813 6414 6825 * * 4696 3827 * 3413 3328 5714 * 6646 41 0 * * * * 985 1015 6434 0 1607 D 42 3331 * 3549 3836 6316 2434 6751 4845 * 5029 5763 4663 4420 5415 6829 2626 6391 4500 3931 4255 42 27 * 5753 * * 0 * 6434 0 1000 L 43 2425 5778 5168 4655 4702 6668 5675 4416 4497 2101 5900 5786 4456 5486 * 4278 5051 3452 6166 4432 43 54 5131 6965 3965 95 908 1098 6362 2120 1542 K 44 3346 * 3620 4048 5146 2937 5346 5859 3579 5804 * 4147 3401 4858 * 3585 4248 5150 3886 4634 44 85 4812 5545 4418 69 * 0 6428 2546 1567 F 45 3096 6605 4924 5587 1546 5118 * 5718 * 3643 4414 5565 * * 6717 3869 5554 4914 3779 3727 45 51 4846 * 3282 157 921 1083 6408 2152 2375 A 46 2633 * 4331 4644 4121 3222 * 5949 3773 2499 * 6464 3953 4210 6537 3726 4264 4998 6731 6759 46 43 5092 * 5146 41 * 0 6414 2181 1571 D 47 3012 6665 3039 4080 5430 2762 5682 6470 5342 3367 6464 4611 3980 4183 * 3437 3867 6686 5566 * 47 26 5804 * 4515 65 * 0 6414 1189 1571 I 48 3499 * 7028 6805 4325 3091 * 3425 5587 3692 5027 4792 4478 4864 * 4163 2973 2719 4800 5687 48 83 4156 * 3939 97 * 0 6414 2818 1571 P 49 3216 * 5741 4893 5510 4089 5174 3509 5630 5582 3955 4816 2077 5288 * 3885 3654 3812 6784 6292 49 52 5534 6184 4251 78 0 * 6414 1529 1571 N 50 2916 * 3852 5020 4216 4164 * 5107 5448 2950 * 2578 4333 4462 4385 4733 4747 4162 6355 5423 50 0 * * * * 0 * 6428 0 1000 G 51 2478 * * * 4349 2198 * 4527 4816 3173 * 6776 2396 6937 * 4032 4356 5181 5715 * 51 76 4489 7152 2633 254 * * 6427 2559 0 I 52 5009 * * 5684 3025 4906 6609 3004 6884 1382 * 5690 6365 6946 6011 * 3899 3311 5899 5239 52 70 4390 * 3844 104 0 * 6427 2775 1000 Q 53 2671 * 3924 2892 3720 2935 6948 6499 4936 4088 6172 4097 4919 5266 6940 3821 6811 4480 4308 6555 53 43 5087 * 3324 152 * * 6427 2258 0 A 54 1605 * 5870 3900 4624 3134 5266 5740 6421 3482 * 6555 5583 4252 6455 3923 5303 4223 5257 5614 54 61 4590 * 4148 84 * * 6427 2385 0 L 55 4455 5682 4860 6613 4360 5718 6038 2141 * 2097 4943 * 6937 6421 * 5944 4300 3215 3676 4586 55 98 4102 7102 4240 78 * * 6427 2983 0 Y 56 3088 * 2701 4474 * 2685 6387 5154 5766 3605 * 4742 5209 3316 5584 3601 4420 6695 4577 5560 56 49 5310 6935 3815 106 0 * 6425 2102 1000 K 57 2538 * * 3848 6102 3428 6762 3762 4144 4552 4874 6793 6319 3571 3531 3972 4182 3389 * 5140 57 43 6023 6160 4363 72 0 * 6422 1511 1000 M 58 3409 * 5005 4972 3499 5038 6877 2895 5620 2407 5850 5962 5234 * * 5044 4102 2624 * 4029 58 124 3600 * 4474 66 0 * 6406 3449 1000 P 59 5492 * 6465 3675 * 3511 4504 6947 5063 3877 * 6725 1139 6327 6771 4762 5403 4071 4464 * 59 81 4597 6233 4379 71 * * 6422 2396 0 A 60 4125 7042 4089 6667 4260 2142 * 5748 4934 3559 5432 * 2972 5076 6274 3975 4225 3280 * 4701 60 63 4935 6668 2348 315 * 0 6344 2169 1000 E 61 2112 * 3962 3648 6956 2719 * 3831 * 2676 5196 6691 * 4367 * 5157 4980 4022 4997 * 61 130 3535 * 4557 63 1000 1000 6342 3460 1685 A 62 3367 * * 5641 3180 1366 * 5973 * 4666 * 4889 5024 * 5630 3911 6700 4426 4083 3986 62 49 4905 * 2233 345 0 * 6344 2118 1000 W 63 3553 * * * 2027 3980 * 4025 4781 3643 4946 * 5265 5589 5855 5694 6326 6419 2036 4496 63 13 6832 * 3000 193 * * 6422 1000 0 A 64 3145 * 2468 6952 2700 3564 6699 5618 * 2334 6725 4965 * 6771 5322 * 4917 3660 5415 5634 64 13 6797 * 2000 415 * * 6422 1000 0 Q 65 4451 6887 2992 4173 4719 4943 * 5934 5006 4540 * 4505 2278 2085 6681 6668 4836 4274 * 6419 65 98 4591 5358 4156 83 * * 6422 2507 0 I 66 * * 5378 * 3651 4286 * 2334 * 2201 4553 5447 2587 5517 5307 5609 4427 3586 * * 66 83 4160 * 3730 113 1000 1000 6326 2991 1553 G 67 5739 6889 * * 3292 1996 * 4041 4706 1866 5166 4037 6484 5938 6592 * 5529 4573 5835 4687 67 54 4777 * 3420 141 * 0 6348 2596 1000 V 68 3608 * 6384 6090 3490 2424 6646 3894 4796 2177 * 5548 5027 5510 5186 5639 4881 3083 6939 * 68 38 5256 * 4257 77 * 0 6348 2066 1000 F 69 3550 6673 * 6564 2034 3697 * 3784 4623 2745 3683 5835 6384 * * 6235 4345 4269 5687 3848 69 72 4364 * 2934 202 0 * 6348 2638 1000 I 70 2675 5023 5063 5254 4606 3225 * 2613 4552 5207 4771 4469 3407 * 5144 4115 4694 3741 * * 70 13 6779 * 5129 42 * * 6422 1000 0 A 71 2811 4711 4173 4527 4813 1887 * * 2774 * * 5094 4099 * 4678 4040 4896 * 4405 * 71 78 4243 * 4785 53 * * 6422 2930 0 F 72 3137 * 1963 * 2936 6842 * 4476 5010 3558 5552 3992 5026 6140 6414 3585 5589 4673 4459 * 72 72 4355 * 4699 57 * * 6424 2897 0 L 73 2846 * 4575 3424 5263 4043 * 4824 3769 3018 5867 5570 2422 * 4800 4445 6326 3507 * * 73 48 4940 * 4604 61 * * 6422 2524 0 E 74 2382 * 3163 1323 6812 4576 * * 4236 6755 4783 4597 5529 5223 * 4381 * * * 6684 74 87 4096 * 5033 45 * * 6422 3156 0 L 75 3869 6559 3571 2816 3918 3264 * 3995 2671 3873 6681 5969 * 5894 * 4543 4207 4665 4456 6378 75 149 3348 * 4598 61 * * 6422 3862 0 F 76 3189 * 5606 5665 2842 4405 * 5302 4122 2358 3535 4979 * 5464 4521 4340 4698 6982 4875 3807 76 81 4187 * 4317 74 * * 6422 3005 0 R 77 2967 * 3005 2261 4651 * 5963 5358 3151 5739 * 3643 4914 6412 4255 5025 4514 4533 5346 7021 77 58 5018 6868 5260 38 * * 6422 2193 0 R 78 5842 * 3583 2264 4953 5651 * 5632 3368 4040 5178 4287 * 5874 2512 4758 3475 5976 5315 5518 78 103 3865 * 4115 86 0 * 6419 3317 1000 G 79 4768 * * * * 5179 6621 * 3728 1999 2289 * * 5115 3317 4311 3670 * 5963 3045 79 25 5859 * 3453 138 * * 6422 1662 0 L 80 3746 * * 4750 * * * 6806 1307 4037 * * 6488 2191 2798 5044 * 6640 * * 80 80 4632 6165 4435 68 * * 6422 2440 0 E 81 5407 * 4232 3325 * * * 5122 5096 1633 4077 4324 * 4606 6397 6937 2685 3090 * * 81 30 5594 * 3274 157 0 * 6332 1680 1000 A 82 2291 * * * * 6621 * 5200 1136 * * 5209 5966 3517 4241 4765 5642 3984 * * 82 23 5966 * 4349 73 * * 6422 1629 0 E 83 * * 5864 25 * * * * * * * * * * * * * * * * 83 0 * * * * * * 6422 0 0 I 84 * * * * 6228 * * 1035 * 1662 * * * * 5028 * 6165 3051 * 5864 84 0 * * * * * * 6422 0 0 N 85 4659 * * 5079 6316 * * 6763 982 5317 5888 2851 * 3181 6440 4819 5962 6721 4657 * 85 0 * * * * * * 6422 0 0 N 86 * * * * * * 2241 * * * * 380 * 5646 * * * * * * 86 0 * * * * * * 6422 0 0 G 87 5094 3546 * * * 211 * * * * * * * * * 5553 * * * * 87 0 * * * * * * 6394 0 0 R 88 * * * * * * * * * * * * * * 0 * * * * * 88 0 * * * * * * 6394 0 0 L 89 2987 * * * 6143 * * 5460 * 366 5319 * * * * * * 4790 * * 89 0 * * * * * * 6394 0 0 A 90 20 * * * * 6156 * * * * * * * * * * * * * * 90 0 * * * * * * 6389 0 0 M 91 * * * * * * * * * 4292 76 * * * * * * * * * 91 0 * * * * * * 6389 0 0 V 92 * * * * 3349 6519 * 2029 * 1635 3172 * * * * * 4030 2818 6633 * 92 0 * * * * * * 6389 0 0 A 93 531 * * * * 2042 * * * * * * * * * 4430 5751 * * * 93 0 * * * * * * 6389 0 0 I 94 3632 6418 * * 1801 * * 2323 * 3546 2180 * * * * 5784 6086 4253 5099 * 94 0 * * * * * * 6389 0 0 T 95 2470 5836 * * 3335 4479 * * * 1557 4106 * * * * 3830 3679 3162 * * 95 0 * * * * * * 6378 0 0 G 96 2901 * * 6605 * 452 * 4492 * * * * * * * 3896 * * * 6265 96 0 * * * * * * 6378 0 0 M 97 5099 4416 * 5613 1742 * * 3227 * 2621 2821 * * 4719 * * * 4142 4778 3995 97 0 * * * * * * 6378 0 0 I 98 2892 5296 * 5481 2657 * * 2509 * 2830 4308 * * * * 6340 5312 2374 5316 4771 98 0 * * * * * * 6378 0 0 S 99 1763 * * * 3901 5628 4406 3360 * 6620 5789 * * * 6579 3217 4688 1845 * 6596 99 0 * * * * * * 6311 0 0 Q 100 5538 * * 2732 * 6156 3621 * 5695 * 5954 * * 597 * * 5723 * 5845 * 100 0 * * * * * * 6045 0 0 N 101 2295 * 4880 1224 * 4987 * * 5385 * * 4012 * 4289 * 2946 4799 * * * 101 0 * * * * * * 5676 0 0 A 102 633 * * * * * * 4967 * 3590 * * * * * 2265 * * * 4959 102 0 * * * * * * 5217 0 0 F 103 3094 * * * 2069 * * * * 992 * * * * * * * 2819 * * 103 0 * * * * * * 4276 0 0 F 104 * * * * 1068 * * * * * * * * * * * * * 3069 1308 104 0 * * 0 * * * 3500 0 0 //