HHsearch 1.5 NAME c7xybE_ FAM FILE c7xybE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7xybE_.a3m DATE Sat Jul 23 08:32:27 2022 LENG 67 match states, 67 columns in multiple alignment FILT 103 out of 176 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.1 EVD 0.4211 -0.0205 SEQ >ss_dssp CCCCTTHHHHHHTCSSHHHHHHHHHHHHHHHTSSCCSSCCCSCCHHHHHHHHHHTTSCCHHHHHHHC >sa_dssp ECCCCDDBBDEDDDEECCDECBDDACECBEEEEDECDCEEDECECECAACBACCEEDBDCDDBDDBE >ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCC >ss_conf 9688899971158788999999999999973261335454668676699999982895887702479 >Consensus aRxsiexxlxxixsryxLVxxaakRARqlxxgxxxxxxxxxxxKxxxiALxEIaxgkixxxxlxexx >c7xybE_ ARVTVEDCLDNVDNRFELVMLATKRARQLATGGKEPKVAWENDKPTVVALREIASGLVDENVVQQED >UniRef50_B9MR33(4-69:77) DNA-directed RNA polymerase, omega subunit n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR33_ANATD E=1e-09 s/c=0.97 id=32% cov=97% -RPGLDELLKYVDNKYTLSVLVAKRARQLLQQAQKKVdiTNFNSDKYVTMAVNEVASGKISYKYVKP-- >UniRef50_O66570(4-60:76) DNA-directed RNA polymerase subunit omega n=1 Tax=Aquifex aeolicus RepID=RPOZ_AQUAE E=7e-05 s/c=0.85 id=34% cov=84% -RPKIEEAMKRVESRYELVHAAVRRTLQLLREGEDFFVQEGGEvhKKTFAAIEDIAEG----------- >UniRef50_A9KPG3(24-79:82) DNA-directed RNA polymerase subunit omega n=7 Tax=Clostridiales RepID=RPOZ_CLOPH E=2e-08 s/c=1.07 id=30% cov=85% ----------VVNSRYSIVLATAKRARQIIDGA-EPLTESSCNKPLSIAVEELYKSKVKIVSEDDEN >UniRef50_Q04EL5(6-103:107) DNA-directed RNA polymerase subunit omega n=2 Tax=Oenococcus oeni RepID=RPOZ_OENOB E=0.0009 s/c=0.46 id=33% cov=96% ---SVDELLNKVDSRYKLIALASKRAKELEELPRlkdellklkreekptdrdkkqiqeiaaqletlvgPTLDNYKSVKPIGRALEEINAGNVQIDPVNKD - >UniRef50_C8WW73(4-66:66) DNA-directed RNA polymerase, omega subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW73_ALIAD E=8e-08 s/c=0.92 id=32% cov=85% --------LERCNSKYALVVLAAKRARKLqNETLNQPGASTTRN--VSRALWEIHDGVVRCKNFDGE- >UniRef50_A1A0T8(13-89:94) DNA-directed RNA polymerase subunit omega n=79 Tax=Actinobacteridae RepID=RPOZ_BIFAA E=7e-12 s/c=0.93 id=32% cov=94% ----IDDLMEHADSKYALAIFAAKRARQINSYFTqlnegllqnvgPLVEYQNQEKPLSIAFREINSGLL-EETLGEDD >UniRef50_Q17Y32(10-74:74) DNA-directed RNA polymerase subunit omega n=15 Tax=Helicobacter RepID=RPOZ_HELAH E=4e-08 s/c=0.91 id=31% cov=96% ----VAQALKNIGNdRYMLDNLVFARVKQLNAGAKTLVnMDPKRHKLVDIAIREIAEGKIDIDRIDERN # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 3062 0 0 R 2 * * * * * * * * * * * * * * 0 * * * * * 2 0 * * * * * * 3813 0 0 V 3 * * * * * * * 2746 * 4479 * * 1484 * * * * 1157 * * 3 0 * * * * * * 3813 0 0 T 4 5043 * * * * 5153 * * 4858 5059 * * * * * 1121 1261 * * * 4 0 * * * * * * 4433 0 0 V 5 4989 * * * * * * 1044 * 5816 4453 * * * * * * 1251 * * 5 0 * * * * * * 4835 0 0 E 6 3663 * 1663 1154 * * * * * * * 3081 * * * * * 4734 * * 6 0 * * * * * * 4922 0 0 D 7 * * 1296 2068 * * * * 2754 * * 4239 * 3714 * 3704 * * * * 7 0 * * * * * * 4922 0 0 C 8 2480 1691 * * * * * 4090 * 1387 5473 * * * * * 5747 5122 * * 8 0 * * * * * * 4920 0 0 L 9 5974 * * * 6684 * * 3126 * 861 2900 5571 * 5746 6135 5493 4581 4123 * * 9 0 * * * * * * 5118 0 0 D 10 4719 * 2851 1802 * 6725 * * 1891 6852 6320 5702 * 4656 6935 3217 4501 5815 * * 10 0 * * * * * * 5195 0 0 N 11 * * * 4637 * 5449 4613 4076 1485 5175 6555 5269 5293 3174 3248 6486 7022 2915 * 5493 11 0 * * * * * * 5239 0 0 V 12 4333 6584 * * 5804 5302 * 1471 6022 5320 6076 6543 * * * 5164 3552 1566 * 5704 12 21 6095 * 1000 1000 * * 5257 1000 0 D 13 * * 1579 2886 * 3335 * * 4596 6740 * 3007 2616 4645 * 4578 6535 * * * 13 20 6200 * 0 * * * 5279 1573 0 N 14 * * 3514 5881 * * * * * * * 1623 * * * 894 4934 * * * 14 55 4734 * 0 * * * 5302 1744 0 R 15 5836 6608 6616 5990 * * 5994 * 1678 * * 6125 4193 6298 966 * * * * 5338 15 0 * * * * * * 5302 0 0 F 16 * * * * 1970 * * * * * * 5838 6359 4549 * * 5840 * * 611 16 0 * * * * * * 5299 0 0 E 17 3340 * 3919 2978 * 4979 * 3941 3818 4536 4378 6215 * * 3223 2690 3460 4334 * 4904 17 0 * * * * * * 5299 0 0 L 18 * * * * 5699 * * 4040 * 245 5284 * * * * 6710 * 6475 * 5063 18 0 * * * * * * 5289 0 0 V 19 3411 4939 6515 * * * * 3082 * * * * * * * 4010 4512 647 * * 19 0 * * * * * * 5289 0 0 M 20 5983 * * * * 5799 3874 2389 * 2275 3730 3233 * 6090 * 6332 3341 2373 * * 20 0 * * * * * * 5289 0 0 L 21 2356 * * 7132 4924 * * 4828 * 1509 3653 * * * * * 5236 1991 * 5607 21 0 * * * * * * 5289 0 0 A 22 792 * * 6489 * 5534 * 4334 * * * * * * * 3820 4648 2123 * * 22 0 * * * * * * 5289 0 0 T 23 818 * * * 5424 * * 6090 5490 * * * * * * 1727 4758 4899 * * 23 0 * * * * * * 5289 0 0 K 24 5424 * * 4782 * * 6901 * 843 5716 5412 * * 3203 2253 * * 6196 * * 24 0 * * * * * * 5289 0 0 R 25 * * * * * * * * * 6308 * * * 5885 114 * 5976 * * 5035 25 0 * * * * * * 5289 0 0 A 26 345 * * * * * * * * * * * * * * 5573 3997 2951 * * 26 0 * * * * * * 5289 0 0 R 27 5217 * * 6133 * * 4154 * 3039 4566 * 5042 * 6090 618 5841 * 6734 * 6035 27 8 7414 * 1000 1000 * * 5289 1000 0 Q 28 7243 * 3958 2342 * 6901 * * 3680 5230 6056 7083 * 846 6640 6164 * 5976 * * 28 0 * * * * * * 5289 0 0 L 29 * * * * * * 6148 1187 * 975 6332 * * * * * * 6554 * 6090 29 54 5570 5978 2672 246 * * 5289 1765 0 A 30 3147 * 5962 4946 5438 6300 * 3577 * 3954 5699 2137 * 3489 3208 3390 5354 3945 * 5279 30 13 6786 * 0 * 0 * 5312 1000 1572 T 31 3071 * 2482 2339 * * * 5292 4308 6659 * 3442 * 3382 4512 3295 5347 4516 * 5917 31 84 6566 4447 3459 138 * * 5289 1000 0 G 32 * * 5467 3829 * 768 7342 * 3540 6640 6060 4803 * 4862 * * 4709 * * 3407 32 98 6900 4129 3322 152 439 1932 5267 1000 2383 G 33 2019 * 3886 4490 5690 2994 5958 6471 4701 5549 5236 5826 4510 4570 4470 2805 * 5421 * 3891 33 167 6654 3328 3459 138 0 * 5257 1000 2863 K 34 3239 5581 6555 2187 * * 4206 5948 3162 5274 4960 3938 4264 3998 4271 3500 5694 5530 * 4579 34 268 3789 3365 3671 118 0 * 5309 2538 3060 E 35 3429 * 4156 2718 5384 5855 * * 6810 5010 * 5632 1572 5722 4723 4322 2967 5834 * 6781 35 107 4389 5411 2549 270 0 * 5261 2478 2880 P 36 3941 * 6025 4431 5632 5872 * 5038 4075 1882 5342 5273 1584 6705 * 4016 6662 * * 6714 36 30 * 5620 * * 0 * 5305 0 2004 K 37 5487 * * 7412 5207 4208 5692 4498 5895 2121 3519 * 5936 4555 6234 5375 3805 1800 * 4713 37 89 5228 4913 516 1734 * 0 5282 1846 1661 V 38 5265 * 4516 2607 * 5660 * 3174 4583 3650 3959 5248 5796 4800 * 4096 5208 1816 * * 38 52 4810 * 0 * 0 * 5240 2086 2600 A 39 6159 * 2087 2644 * 5612 4954 6037 3550 5166 * 4084 5153 4820 5155 3007 3579 5465 * 5145 39 48 5991 5885 680 1413 * * 5289 1637 0 W 40 4506 5419 6733 2861 4738 6007 5181 5288 4020 4279 7540 4617 3541 6925 3577 4179 2813 3977 5246 4190 40 19 6251 * 0 * 0 * 5285 1492 1000 E 41 6764 4508 2612 2488 * 4293 5540 7053 2503 6088 * 5039 3551 5232 3992 4745 5103 4303 * 6413 41 164 3874 4673 709 1366 * * 5289 2810 0 N 42 3773 6983 6213 * 6375 2680 5220 * 2954 * 6590 3028 * 4767 3398 2058 4682 5786 * 5674 42 79 5557 4959 0 * 0 * 5270 1883 2074 D 43 4721 * 2285 2298 6780 7075 3568 6160 3267 5849 3728 3441 7508 5774 5572 * 5153 4416 6591 5663 43 100 4564 5343 1134 878 0 * 5257 1835 1628 K 44 * * 6440 6340 * 4943 6484 * 298 * * 4577 * * 4323 5202 * * * * 44 0 * * * * 542 1676 5302 0 2001 P 45 4619 6152 6061 3887 5961 * * * 4463 4159 * 3481 1128 * 6483 3849 5487 5272 * 3848 45 24 5946 * 1000 1000 0 * 5275 1694 1000 T 46 4104 5223 * 5874 * * 6010 3371 * 2435 6629 * 4151 * * 6379 2350 1615 * * 46 0 * * * * * * 5289 0 0 V 47 * 5799 3345 * 5688 3199 * 5486 5278 6489 * 4980 * 5502 6117 2354 2682 1854 * * 47 25 5841 * 2322 322 * * 5289 1097 0 V 48 5688 6148 * * * * * 1351 4082 4071 4090 * * 4159 4040 5607 3413 2590 * * 48 14 6649 * 0 * * * 5289 1000 0 A 49 148 * * * * 5684 * * * * * * * * * 3679 * * * * 49 0 * * * * * * 5289 0 0 L 50 6690 * * 6117 5289 * * 3306 * 566 3910 * * 6010 * * 5382 3880 * * 50 0 * * * * * * 5289 0 0 R 51 5684 * 5647 1631 * * 4796 5841 3826 5646 5066 4875 * 4110 1731 6911 5229 * 6588 5311 51 0 * * * * * * 5289 0 0 E 52 * * 5688 78 * * * * * * * * * 5885 5917 * * * * * 52 0 * * * * * * 5289 0 0 I 53 * * * * 4414 * * 591 * 3269 4907 * * * * * * 2716 * * 53 0 * * * * * * 5289 0 0 A 54 973 * 4728 4695 7312 4519 5942 3583 6117 5091 5234 3826 * 6088 5810 6475 * 5642 7139 4236 54 21 6111 * 0 * * * 5289 1000 0 S 55 2165 * 3433 1687 * 4767 6743 * 3851 * 6879 5416 * 4547 5755 2686 6649 * * * 55 0 * * * * * * 5289 0 0 G 56 * * 3050 4493 * 682 6088 * 4051 6035 * 4111 * 6837 5881 4722 * * * * 56 0 * * * * * * 5289 0 0 L 57 * * * 5729 5724 * 5580 5359 950 2968 5466 4887 * 4726 4349 4834 4193 4706 * * 57 0 * * * * * * 5268 0 0 V 58 * * * * * * * 1626 * 2106 5953 * * * * * 6021 1358 * 5506 58 25 * 5845 * * * * 5190 0 0 D 59 6487 * 2835 * * 4099 * * 3069 * * 3288 4649 5039 4838 2811 1779 5078 * * 59 0 * * * * 910 1096 5201 0 1445 E 60 4791 5182 * 4099 3012 * 5212 3386 5820 4169 * * 4838 4831 5333 6730 5775 3771 4347 1675 60 0 * * * * * 0 5191 0 1000 N 61 3017 * 3474 1454 * 6518 5641 6003 3289 6087 * 5069 * 4089 4710 4352 6430 4341 * 5562 61 0 * * * * 0 * 5141 0 1000 V 62 * * 4019 4755 5603 3915 5231 3936 4636 3153 6333 3677 4345 3659 4061 3856 3380 3195 * 5899 62 0 * * * * * * 5124 0 0 V 63 5899 * 4996 4293 5384 4455 * 2421 6254 1222 6161 * * 5364 * * 3973 3310 * * 63 0 * * * * * * 5114 0 0 Q 64 4383 * 1937 2145 3465 5802 * * 4199 * * 4349 5593 4021 3789 4812 5751 4508 * * 64 0 * * * * * * 5146 0 0 Q 65 5596 * 3992 978 * 5050 5835 * 5101 * * 3184 4547 2754 * * 5021 * * * 65 0 * * * * * * 5001 0 0 E 66 * * 2313 1441 * 4671 * * 3972 * * * * 3019 4986 2990 4421 * * * 66 0 * * * * * * 4675 0 0 D 67 * * 1209 2115 * * * * * * * 1571 * * * * * * * * 67 0 * * 0 * * * 3703 0 0 //