HHsearch 1.5 NAME c7kpoA_ FAM FILE c7kpoA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7kpoA_.a3m DATE Sat Nov 28 08:36:34 2020 LENG 107 match states, 107 columns in multiple alignment FILT 15 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4169 -0.1118 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCSSCCEEETTEEECHHHHHTTSTTTCCSSCCHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHH HHHHHHC >sa_dssp EEECDEDBCDBABDAACBABEABDDCCEDDCCCAAEECECBECCECEEDDDADCACDACDDEDBCEEBECECACDAADCABEEAEDEDEDCDDACECCDD ADECDEE >ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH HHHHHCC >ss_conf 9887124899999999999999998424412234321480788850784047779985197644478118999999999995057781258999999999 9998509 >Consensus xxtxxxxxRxxlVxxMxxslxxWexxTgxxKxdlAexSgiWrVyxDxxxxrTrTLDKYLxietLPxxPRWrxVxxTaxyVLsxcxxxxxxrxxLexxlxx lxxlixx >c7kpoA_ GSSKQDLXRAVLVEAXTSALNYWERVSGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCKEAGPERTHIEXQRDK LQKLLTS >UniRef50_Q089Y1(514-611:617) TPR repeat-containing protein n=2 Tax=Shewanella RepID=Q089Y1_SHEFN E=2e-27 s/c=1.26 id=31% cov=93% ---------ELLVNTMIDCISIWEKSTKTNKVELADRSQIWTISIDSGRLRTRSLDKYLQVKKLPANPRWRNVVKTCHFILSECHLSNDDRTLLTSHLDQ IMQVIKS >UniRef50_B1KHQ5(589-691:695) Putative PAS/PAC sensor protein n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KHQ5_SHEWM E=7e-27 s/c=1.17 id=35% cov=91% -----------LVDLMFYCVEFWETTTQSTRIELAEKSGIWRVSIDDGRLRTRSLDRYLSVQQLPKKPRWREVLRTAHYVIAECKLDTEQENTINLKLTA LNQHLHT >UniRef50_D1U387(985-1150:1150) Sensor protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U387_9DELT E=2e-42 s/c=0.60 id=38% cov=97% --TNMQTKRSMSVTVVKLAVDCWTASTGTAKADMAEQSGLWNVYMERdGYFRTQTLDKYLDPELLPQKPRWQKVLATADFVLANCEEDSPCRRELEEATA DFRALF-- >UniRef50_Q1GCY8(936-1092:1096) Sensor protein n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GCY8_SILST E=1e-36 s/c=0.55 id=40% cov=98% -TTPGDTYRDTIVTLMSDSLDIWSAATGKGKIDFAETSGIWRVNLDKTSLQTRTLDKYLLIETLPDNPRWRDVLKTVSFVLSLKERETADPALaqrfeaL ETQLEAFRTLI-- >UniRef50_C7RCL6(488-602:607) TPR repeat-containing protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RCL6_KANKD E=2e-32 s/c=1.00 id=34% cov=100% ACTDEQF-RQSLVELLIETVNLWEKASQLDRIELAEKSRIWRVSIDEGRLRTRSLDKYLNIQKIPQNPRWRNVVKTSHYVLAECELSQSDRALLEDKLEQ VMSLIKA >UniRef50_C6BV14(548-649:650) Putative PAS/PAC sensor protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BV14_DESAD E=4e-27 s/c=0.94 id=34% cov=94% ----QPDKRELAVIIMNSSLEYWEKATGRSKADLASESGIWNIYIEKDGYaRTQTLDRYLNIETLPERPRWKNIYATAEFVLNNSAQNPEATSELETNLN QLKKM--- >UniRef50_B1KEQ0(483-582:600) Tetratricopeptide TPR_2 repeat protein n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KEQ0_SHEWM E=5e-27 s/c=1.03 id=31% cov=93% --------RLQLVELMHLALQMWEESTQTGKLELAQQSKIWSVGIDDGRIRARAMERYFGLNTLPQKPRWRSVVRTCNYVLQKCEGKSLYREELETNLKT FQNNIKR >UniRef50_A0KMU1(1052-1154:1159) Sensor protein n=2 Tax=Aeromonas RepID=A0KMU1_AERHH E=2e-28 s/c=1.00 id=40% cov=97% -QQDDEPLRRALVDTMRLTLDAWQQSTGKGKIVLAEKSKLWRVYMDRSSPQTRTLDKYLSLDTLPKAPRWKTVVATAEYVLSHGPLNEAQRQQLHHSAQT LRQL--- >UniRef50_Q1JYH3(1047-1149:1152) Sensor protein n=2 Tax=Proteobacteria RepID=Q1JYH3_DESAC E=7e-28 s/c=0.99 id=32% cov=96% YTSAENDRRRLAVQVMQLSIDYWYEVTDLGKVDLARESGIWKLYTDRNGYtRAQTLDKYLGEDTFPRRPRWKSISNTAVYVLAACTTPSPLRDRLENALA ALR----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1585 * * * * 1650 * * * * * * * * * * * * * 1523 1 0 * * * * * * 1995 0 0 S 2 * 2275 * * * * * * * * * * * 2368 * 2363 1304 * * * 2 0 * * * * * * 2406 0 0 S 3 * * * * * * * * * * * * * 2631 * 1540 1015 * * * 3 0 * * * * * * 2570 0 0 K 4 2467 * 1569 * * * * * 2617 * * 2605 2691 * * * * * * * 4 0 * * * * * * 2570 0 0 Q 5 * * 2834 1720 * 2920 * * * * 2849 * * 1810 * * * * * * 5 0 * * * * * * 2688 0 0 D 6 * * 1476 3082 * * * * * * * 2843 3011 1949 * * * * * * 6 0 * * * * * * 2606 0 0 L 7 * * 1924 * 2871 * * * * 3029 * * 3082 * * 3550 1868 * * * 7 212 * 2871 * * * * 2606 0 0 X 8 * * * * * * * * 1598 2591 * * * * 2484 * * * * 1621 8 0 * * * * 0 * 2300 0 1000 R 9 * * * * * * * * * * * * * * 0 * * * * * 9 0 * * * * * * 2865 0 0 A 10 3532 * 3232 1657 * * * * * 3271 * * * 3548 2252 3457 * * * * 10 0 * * * * * * 2963 0 0 V 11 3123 * * * * * * * * 1489 3457 * * 3271 * 3548 2622 3532 * * 11 0 * * * * * * 2963 0 0 L 12 2001 * * * * * * 2732 * 959 * * * * * 3553 * * * * 12 0 * * * * * * 3055 0 0 V 13 * * * * * * * * * * * * * * * * * 0 * * 13 0 * * * * * * 3080 0 0 E 14 4348 * 2551 2099 * * * 3751 * * * 2704 * 2754 * * 2550 * * * 14 0 * * * * * * 3080 0 0 A 15 3737 * * * * * * 3751 * 1418 * * * * * * 2501 1738 * * 15 0 * * * * * * 3080 0 0 X 16 * * * * * * * 3624 * 3751 393 * * * * * * 3593 * * 16 0 * * * * * * 3015 0 0 T 17 * * * * 3770 * 3458 2768 3692 * * 3751 * 2754 2544 2811 3737 * * * 17 0 * * * * * * 3080 0 0 S 18 * * 2172 2820 * * * * * 1272 * * * * * 2744 * * * 3770 18 0 * * * * * * 3080 0 0 A 19 2039 2712 * * * * * * * * * * * * * 1187 2601 * * * 19 0 * * * * * * 3080 0 0 L 20 * * * * * * * 2696 * 672 * * * * * * * 2197 * * 20 0 * * * * * * 3080 0 0 N 21 3770 * 1543 2346 * * * * * * * 2207 * 3458 * 3656 * * * * 21 0 * * * * * * 3080 0 0 Y 22 3361 2731 * * 3770 * * 2172 * 2820 3458 * * * * * * * * 2157 22 0 * * * * * * 3080 0 0 W 23 * * * * * * * * * * * * * * * * * * 0 * 23 0 * * * * * * 3080 0 0 E 24 * * * 1119 * * * * * * * * * 2030 * 2811 3692 * * 3738 24 0 * * * * * * 3080 0 0 R 25 2185 * * 2063 * * * 3753 2177 * * * * 3361 3737 * 3770 * * * 25 0 * * * * * * 3080 0 0 V 26 1484 * * * * * * * * * * * * * * 1535 3770 2738 * 3753 26 0 * * * * * * 3080 0 0 S 27 * * * * * * * * * * * * * * * 2811 222 * * * 27 0 * * * * * * 3080 0 0 G 28 * * 3738 * * 887 * * 3656 * * * * 2109 * 3770 * * * * 28 0 * * * * * * 3080 0 0 Q 29 * * * * * * * * 1671 2812 * * * 3737 2760 3770 2013 * * * 29 0 * * * * * * 3080 0 0 S 30 3692 * 2829 * * 1301 * * * * * 3656 * * * 2162 3770 * * * 30 0 * * * * * * 3080 0 0 K 31 * * * * * * * * 348 * * * * * 2224 * * * * * 31 0 * * * * * * 3080 0 0 F 32 2147 * * * 3737 * * 1394 3770 3458 * * * * * * * 2696 * * 32 0 * * * * * * 3080 0 0 T 33 * * 1177 1684 * * 3753 * * * * * * * * * 3737 3361 * * 33 0 * * * * * * 3080 0 0 F 34 * * * * 2201 * * * * 504 3692 * * * * * * * * * 34 0 * * * * * * 3080 0 0 A 35 0 * * * * * * * * * * * * * * * * * * * 35 0 * * * * * * 3080 0 0 E 36 * * 3656 720 * * * * * * * * * 3458 2754 3751 * * * * 36 0 * * * * * * 3080 0 0 Q 37 * * * 2744 * * * * 2070 * * * * 1659 3656 3753 2811 * * * 37 0 * * * * * * 3080 0 0 S 38 * * * * * * * * * * * * * * * 0 * * * * 38 0 * * * * * * 3080 0 0 G 39 * * * * * 760 * * 1930 * * * * 3656 3889 * * * * * 39 0 * * * * * * 3080 0 0 L 40 * * * * * * * 730 * 1332 * * * * * * * * * * 40 0 * * * * * * 3080 0 0 W 41 * * * * * * * * * * * * * * * * * * 0 * 41 0 * * * * * * 3080 0 0 R 42 * * * * * * * * 3738 * * 2152 * * 917 3458 3656 * * * 42 0 * * * * * * 3080 0 0 V 43 * * * * * * * 2702 * 2754 * * * * * * * 518 * * 43 0 * * * * * * 3080 0 0 Y 44 * * * * * 3458 * * * * * 2811 * * * 2184 * * * 872 44 0 * * * * * * 3080 0 0 L 45 * * * * * * * 1376 * 2201 2007 * * * * * 2754 * * * 45 0 * * * * * * 3080 0 0 D 46 * * 237 2721 * * * * * * * * * * * * * * * * 46 110 3770 * 0 * * * 3080 1000 0 R 47 * * 2606 3889 * 3753 * * 2206 * * 3770 * * 1623 3656 * * * * 47 116 3692 * 0 * * * 3080 1000 0 S 48 * * 3751 * * 1115 * * * * * 3738 * * * 2020 2811 * * * 48 0 * * * * * * 3080 0 0 T 49 * * * * * 2744 3770 * * * * * * * 1684 2060 2745 * * 3692 49 0 * * * * * * 3080 0 0 L 50 3753 * * 3770 3692 * * 3458 * 1192 * * 3361 * * * * * * 2744 50 233 2744 * 0 * * * 3080 1454 0 Q 51 * * * * * * * * 3753 * * * * 1667 711 * * * * * 51 0 * * * * * * 3080 0 0 T 52 2591 * * * * * * * * * * * * * * * 262 * * * 52 0 * * * * * * 3080 0 0 R 53 * * * * * * * * * * * * * 1737 514 * * * * * 53 0 * * * * * * 3080 0 0 T 54 3458 * * * * * * * * * * * * * * 2184 538 * * * 54 0 * * * * * * 3080 0 0 L 55 * * * * * * * * * 138 3458 * * * * * * * * * 55 0 * * * * * * 3080 0 0 D 56 * * 138 3458 * * * * * * * * * * * * * * * * 56 0 * * * * * * 3080 0 0 K 57 * * * * * * * * 393 * * * * * 2067 * * * * * 57 0 * * * * * * 3080 0 0 Y 58 * * * * * * * * * * * * * * * * * * * 0 58 0 * * * * * * 3080 0 0 L 59 * * * * 3458 * * * * 138 * * * * * * * * * * 59 0 * * * * * * 3080 0 0 R 60 * * 3692 * * 2591 * * * 2811 * 2818 * 3656 3737 1652 * * * * 60 0 * * * * * * 3080 0 0 I 61 * * * 2754 * * * 1477 * 1930 * * 3692 * * * * 2712 * * 61 0 * * * * * * 3080 0 0 E 62 * * 2537 1177 * * * * 3656 * * 3458 * 2218 * * * * * * 62 0 * * * * * * 3080 0 0 T 63 * * * * * * * * 2768 3692 * * * 3770 * * 509 * * * 63 0 * * * * * * 3080 0 0 L 64 * * * * 2754 * * 3889 * 351 * * * * * * * * * * 64 0 * * * * * * 3080 0 0 P 65 * * * * * * * * * * * * 0 * * * * * * * 65 0 * * * * * * 3080 0 0 K 66 3656 * 2811 3751 * * * * 1645 * * * * 2084 2754 * * * * * 66 0 * * * * * * 3080 0 0 T 67 3361 * * * * * * * 1663 * * 1789 * * 2168 * 3737 * * * 67 0 * * * * * * 3080 0 0 P 68 * * * * * * * * * * * * 0 * * * * * * * 68 0 * * * * * * 3080 0 0 R 69 * * * * * * * * * * * * * * 0 * * * * * 69 0 * * * * * * 3080 0 0 W 70 * * * * * * * * * * * * * * * * * * 0 * 70 0 * * * * * * 3080 0 0 R 71 * * * 3753 * * * * 2020 * * 3770 * 3692 920 * * * * * 71 0 * * * * * * 3080 0 0 T 72 * * 2811 3770 * * * * 3692 * * 2177 * * 3770 2591 2020 * * * 72 0 * * * * * * 3080 0 0 V 73 * * * * * * * 2168 * * * * * * * * * 363 * * 73 0 * * * * * * 3080 0 0 L 74 * * * * * * * * * 1177 * * * * * 3738 * 1577 * 2760 74 0 * * * * * * 3080 0 0 N 75 1634 * * * * * * * 1789 * * 2738 * * 2068 * * * * * 75 0 * * * * * * 3080 0 0 S 76 * * * * * * * * * * * * * * * 3737 112 * * * 76 0 * * * * * * 3080 0 0 L 77 876 2553 * * * * * * * 3737 * * * * * 3889 * 2811 * * 77 0 * * * * * * 3080 0 0 D 78 * * 2715 2543 * 3753 2184 * * * * 3458 * * 3770 2811 * 3738 * * 78 0 * * * * * * 3080 0 0 Y 79 * * * * 1421 * 3753 * * * * * * * * * * * * 856 79 0 * * * * * * 3080 0 0 I 80 * * * * * * * 2696 * * * * * * * * * 242 * * 80 0 * * * * * * 3080 0 0 L 81 * * * * * * * 3770 * 110 * * * * * * * * * * 81 0 * * * * * * 3080 0 0 E 82 1771 * * 2745 * * * * * * * 3751 * 3458 * 1349 * * * * 82 70 4405 * 1000 1000 * * 3080 1000 0 H 83 2754 * * 1903 * * 2020 * 3458 3391 * 2721 * * * * * * * * 83 65 * 4507 * * * * 3080 0 0 C 84 * 658 * * * 2822 * * 3344 * * * * * 4345 3692 * * * * 84 0 * * * * * 0 3107 0 1000 K 85 3692 * 3675 1360 * * 3619 * 2109 * * * 3954 * * * 3699 * * * 85 0 * * * * * 0 3107 0 1000 E 86 * * * 2087 * 3428 * * * 1436 * * * 3692 3344 * 2986 * * * 86 0 * * * * * 0 3107 0 1000 A 87 2959 * 2286 4376 * * * * 2546 * * 2817 3699 * * 2132 * * * * 87 0 * * * * 0 * 3107 0 1000 G 88 * * 4405 2971 * 3071 * * * * * 3656 3751 3889 * 1659 2568 * * * 88 0 * * * * * * 3080 0 0 P 89 3328 * 3656 2760 * * * * * 2606 * * 1651 3753 * 3889 * 4348 * * 89 0 * * * * * * 3080 0 0 E 90 3041 3692 1661 3737 * * * * * 2379 * * * 2981 * * * * * 3458 90 0 * * * * * * 3080 0 0 R 91 * 3770 * 3030 * * * * 3753 4405 * 4507 4436 * 948 * 3751 * * * 91 65 * 4507 * * * * 3080 0 0 T 92 2200 * 2701 3428 * * * * * * * 3727 * 2808 3660 3692 2637 * * * 92 0 * * * * * 0 3107 0 1000 H 93 * * * 2003 * * 3655 * * 2001 * * * 2391 3699 * 2701 * * * 93 148 3360 * 2329 320 * 0 3107 1064 1000 I 94 4312 * * * * * * 2690 * 331 * * * * * * * * * * 94 0 * * * * 0 * 3107 0 1000 E 95 * * * 743 * * 4228 * 3770 * * 2762 * 4348 * * 3656 * * * 95 0 * * * * * * 3080 0 0 X 96 4274 3581 3693 3560 * * 4055 * * 3566 * 3602 * 3629 * 3472 1715 * * * 96 0 * * * * * * 3022 0 0 Q 97 2688 * * * * * 3602 * 2759 3709 3710 2553 * 2084 * 4171 * * * * 97 0 * * * * * * 3087 0 0 R 98 4171 * * * * * * * * 588 * * * * 3016 * 3661 3709 * * 98 0 * * * * * * 3087 0 0 D 99 2688 * 2638 1949 * * * * 3433 * * 3683 * 2496 * * 3689 * * * 99 0 * * * * * * 3087 0 0 K 100 1911 * 3661 * * * * * 3676 * * * * 1505 * 3710 2755 * * * 100 0 * * * * * * 3087 0 0 L 101 * * * * 1816 * * 3602 * 828 * * * * * * * 3832 * * 101 0 * * * * * * 3087 0 0 Q 102 * * 3652 * * * * * 3634 * 2663 2633 * 2490 1544 * * * * * 102 0 * * * * * * 3132 0 0 K 103 3508 * * * * * * * 1863 * * 3265 * 1595 * 3702 2998 * * * 103 0 * * * * * * 3079 0 0 L 104 * * * * * * 3584 3356 * 1154 3478 3265 * 3560 * * * 3456 * * 104 0 * * * * * * 3079 0 0 L 105 * * * * 2960 * * 930 * 1529 * * * * * * * * * * 105 0 * * * * * * 2757 0 0 T 106 1755 * * * * * 2886 * 1241 * * * * * * * 2780 * * * 106 0 * * * * * * 2595 0 0 S 107 2521 * * * * * * * * * * * * * 2228 1252 2377 * * * 107 0 * * 0 * * * 2278 0 0 //