HHsearch 1.5 NAME c7hxvA_ FAM FILE c7hxvA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c7hxvA_.a3m DATE Sat Mar 1 10:00:42 2025 LENG 140 match states, 140 columns in multiple alignment FILT 11 out of 13 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.3773 -2.2158 SEQ >ss_pred CCEEEEEEEEEEEEECCCHHHHHCCEEECCCCCEEEEEECCCCCCEECCCCCCCEEEEEECCCEEEEEEEECCCEEEEECCCCCHHHEEEEEEEEEECCC CCCCCEEEEECCCCEEEEEECCCCEEEEEEEEEEEEECCC >ss_conf 9528985179986521681442011012477738999824666633045625634898502673620899378459981688251422420366630378 6544306787155238997178853986884133222059 >Consensus xgavyvgnykixNxHLatxedxxnxvxxxxnrDLlvxxtxaxGxdxIarCxCttgvYYcxxxxkyyPvxxxxpxxxxiexseYYPxrxQxxxLlgxGxxE pGDCGGiLrCxHGviGivTagGxgxVxFaDiRxlxxxeee >c7hxvA_ SGAIYVGNYRVVNRHLATHNDWANLVWEDSSRDLLVSSTTAQGCDTIARCDCQTGVYYCSSRRKHYPVSFSKPSLIFVEASEYYPARYQSHLMLAVGHSE PGDCGGILRCQHGVVGIVSTGGNGLVGFADVRDLLWLDEE >UniRef50_B3SRP0(864-1003:2187) Polyprotein n=637 Tax=Picornaviridae RepID=B3SRP0_9ENTO E=6e-68 s/c=1.84 id=77% cov=101% SGAIYVGNYRVVNRHLATQQDWDNLVWEDYNRDLLVSQTTAHGCDTIARCDCTTGVYFCKSMMKHYPVSFQGPGLVHVKKNEYYPERYQSHVLLATGHSE PGDCGGILRCQHGVIGIVTMGGDNLVGFADIRDLFWLDDE >UniRef50_P03313(858-997:2185) RNA-directed RNA polymerase 3D-POL n=4566 Tax=root RepID=POLG_CXB3N E=3e-67 s/c=1.83 id=71% cov=101% SGAVYVGNYRVVNRHLATSADWQNCVWESYNRDLLVSTTTAHGCDIIARCQCTTGVYFCASKNKHYPISFEGPGLVEVQESEYYPRRYQSHVLLAAGFSE PGDCGGILRCEHGVIGIVTMGGEGVVGFADIRDLLWLEDD >UniRef50_P36290(790-1127:2214) RNA-directed RNA polymerase 3D-POL n=3134 Tax=Enterovirus RepID=POLG_CXA24 E=1e-90 s/c=0.45 id=57% cov=101% NMAVYVAGYKICNYHLATPEDHDNAVRVLWNRDLMIVSSRAQGSDTIARCNCRTGVYYCKSMKKYYPVTVTEPTFQYMEANDYYPARYQTHMLLGMGFAE PGDCGGILRCNHGVMGIVTAGGNGIVAFADIRDLWVYEEE >UniRef50_P06209(784-1119:2206) RNA-directed RNA polymerase 3D-POL n=4988 Tax=root RepID=POLG_POL32 E=6e-88 s/c=0.45 id=56% cov=101% NKAVYTAGYKICNYHLATQEDLQNAVSVMWNRDLLVTESKAQGIDSIARCNCSTGVYYCESRSRYYPVSFVGPTFQYMEANDYYPARYQSHMLIGHGFAS PGDCGGILRCQHGVIGIITAGGEGLVAFSDIRDLYAYEEE >UniRef50_UPI0000163F32(1-145:146) 2A (P2-A) n=1 Tax=Human rhinovirus 14 RepID=UPI0000163F32 E=1e-26 s/c=0.81 id=45% cov=101% YGGIYTSNVKIMNYHLMTPEDHHNLIAPYPNRDLAIVSTGGHGAETIPHCNRTSGVYYSTYYRKYYPIICEKPTNIWIEGSPYYPSRFQAGVMKGVGPAE LGDCGGILRCIHGPIGLLTAEGSGYVCFADIRQLECIAEE >UniRef50_A3R4H5(169-384:384) Polyprotein (Fragment) n=53 Tax=Human enterovirus D RepID=A3R4H5_9ENTO E=4e-57 s/c=0.60 id=45% cov=77% FGGAFVGSYKIINYHLATDQEKHDAVYVDWQSDILVTTVAAHGKHQIARCKCNTGVYYCKHKDRSYPVCFEGPGIQWIEENEYYPARFQTNTLLATGPVE AGDCGGL--------------------------------- >UniRef50_Q6ST70(288-477:477) Polyprotein (Fragment) n=69 Tax=Enterovirus RepID=Q6ST70_9ENTO E=9e-67 s/c=0.67 id=41% cov=69% FGAVYTCNYKIMNYHLMTHEDHLNLLTPYYNRDLAVVATGALGSETIPHCNCTSGVYYSQYYNKYYPIICDKPTNIWIEGGNYYPSRFRIRGLKGV---- ---------------------------------------- >UniRef50_P04936(854-992:2150) RNA-directed RNA polymerase 3D-POL n=87 Tax=root RepID=POLG_HRV2 E=1e-59 s/c=1.40 id=36% cov=100% DMYVHVGNLIYRNLHLFNSEMHES-ILVSYSSDLIIYRTNTVGDDYIPSCDCTQATYYCKHKNRYFPITVTSHDWYEIQESEYYPKHIQYNLLIGEGPCE PGDCGGKLLCKHGVIGIVTAGGDNHVAFIDLRHFHCAEEQ >UniRef50_P07210(870-1008:2164) RNA-directed RNA polymerase 3D-POL n=290 Tax=root RepID=POLG_HRV89 E=1e-59 s/c=1.40 id=36% cov=100% SMFVHVGNLIYRNLHLFNS-DLDDSILVSYSSDLIIYRTNTEGNDVIPNCDCTECTYYCHHKDRYFPIRVTAHDWYEIQESEYYPKHIQYNLLIGEGPCE PGDCGGKLLCKHGVIGMITAGGEGHVAFIDLRKFQCAEEQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * 3161 * 2257 * * * * * * 2540 * * * 1321 * * * 3225 1 0 * * * * * * 2432 0 0 G 2 * * * * * 719 * * 3473 * 1726 * * * * * * * * * 2 0 * * * * * * 2432 0 0 A 3 847 * * * 3202 2162 * * * * * * * * * * * * * 3161 3 0 * * * * * * 2432 0 0 I 4 3101 * * * * * * 1946 * * * * * * * * * 680 * * 4 0 * * * * * * 2432 0 0 Y 5 * * * * 3101 * 2182 * * * * * * * * * * * * 593 5 0 * * * * * * 2432 0 0 V 6 * * * * * * * * * * * * * * * * 1788 493 * * 6 0 * * * * * * 2432 0 0 G 7 2540 3432 * * * 839 * * * * * * * * * 3225 * 3851 * * 7 0 * * * * * * 2432 0 0 N 8 * * * * * 2540 * * * * * 491 * * * 3101 * * * * 8 0 * * * * * * 2432 0 0 Y 9 * * * * * * * * * 2182 * * * * * * * 3225 * 572 9 0 * * * * * * 2432 0 0 R 10 * * * * * * * 2182 1035 * * * * * 1778 * * * * * 10 0 * * * * * * 2432 0 0 V 11 * * * * * * * 1035 * * * * * * * * * 1778 * 2182 11 0 * * * * * * 2432 0 0 V 12 * 2540 * * * * * 3101 * * 2325 * * * 2182 * * 1778 * * 12 0 * * * * * * 2432 0 0 N 13 * * * * * * * * * * * 0 * * * * * * * * 13 0 * * * * * * 2432 0 0 R 14 * * * * * * * * * 2182 * * * * 1778 * * * * 1035 14 0 * * * * * * 2432 0 0 H 15 * * * * * * 0 * * * * * * * * * * * * * 15 0 * * * * * * 2432 0 0 L 16 * * * * * * * * * 0 * * * * * * * * * * 16 0 * * * * * * 2432 0 0 A 17 786 * * * 2182 * * * * * 2325 * * * * * * * * * 17 0 * * * * * * 2432 0 0 T 18 * * * * * * * * * * * 2182 * * * * 359 * * * 18 0 * * * * * * 2432 0 0 H 19 * * 3101 * * * 2066 * * * * * 2405 2594 * 1785 * * * * 19 166 * 3202 * * * * 2432 0 0 N 20 3727 * * 833 * * * * * * * 3609 * 2283 * * 3725 * * * 20 0 * * * * 0 * 2378 0 1000 D 21 * * 374 3101 * * * * * * 3161 * * * * * * * * * 21 0 * * * * * * 2432 0 0 W 22 * * * * * * 1347 * 3101 2331 * * * * * * * * 1778 * 22 0 * * * * * * 2432 0 0 A 23 3700 * 1910 3161 * * 2162 * * 3432 * * * 2126 * * * * * * 23 0 * * * * * * 2432 0 0 N 24 * * 2151 * * * * * * * * 593 * * * 3161 * * * * 24 171 * 3161 * * * * 2432 0 0 L 25 1685 2733 * * * * * * * 1416 * * * * * 2610 * * * * 25 0 * * * * 0 * 2371 0 1000 V 26 * * * * * * * 1611 * 3432 * * * * * * * 786 * * 26 0 * * * * * * 2432 0 0 W 27 3225 * * * * * * * * 2182 * * * * 3610 3473 3432 * 1778 3101 27 0 * * * * * * 2432 0 0 E 28 * * * 1778 * * * * * * * * 2325 * * * * 975 * * 28 0 * * * * * * 2432 0 0 D 29 * * 1564 * * * * * * 3610 3473 * * * * 1785 * * * 2325 29 0 * * * * * * 2432 0 0 S 30 * * * * * * * * * * * * 3225 * * 3700 * * 1794 922 30 0 * * * * * * 2432 0 0 S 31 * * * * * * * * * * * 771 * 3101 * 1750 * * * * 31 0 * * * * * * 2432 0 0 R 32 * * * * * * * * * * * * * * 593 1569 * * * * 32 0 * * * * * * 2432 0 0 D 33 * * 0 * * * * * * * * * * * * * * * * * 33 0 * * * * * * 2432 0 0 L 34 * * * * * * * 3101 * 179 * * * * * * * * * * 34 0 * * * * * * 2432 0 0 L 35 2325 * * * * * * 2182 * 1006 3610 * * * * * * * * * 35 0 * * * * * * 2432 0 0 V 36 * * * * * * * 1063 * * * * * * * * * 939 * * 36 0 * * * * * * 2432 0 0 S 37 * * * * * * * * * * * * * * * 1778 2275 1829 * 2182 37 0 * * * * * * 2432 0 0 S 38 3432 * * 3473 * * * * * * * * * 3726 2182 1912 1969 * * * 38 0 * * * * * * 2432 0 0 T 39 * * * * * * * * * * * * * * * 2540 491 3101 * * 39 0 * * * * * * 2432 0 0 T 40 3101 * * * * 2325 * * 3473 * * 2182 * * 3610 * 1778 * * * 40 0 * * * * * * 2432 0 0 A 41 572 * * * * 3225 * * * * * * * * * * 2182 * * * 41 0 * * * * * * 2432 0 0 Q 42 * * * 3202 * * 1191 * * 3432 * * * 2006 * * * 3161 * * 42 0 * * * * * * 2432 0 0 G 43 * * * * * 0 * * * * * * * * * * * * * * 43 0 * * * * * * 2432 0 0 C 44 3225 1778 3161 * * * * 3473 3101 * * 3202 * * * 2518 * * * * 44 0 * * * * * * 2432 0 0 D 45 * * 548 2325 * * 3101 * * * * * * * * * * * * * 45 0 * * * * * * 2432 0 0 T 46 * * * * * * * 3843 * * * * * 3101 * 3473 1204 2490 * 3161 46 0 * * * * * * 2432 0 0 I 47 * * * * * * * 0 * * * * * * * * * * * * 47 0 * * * * * * 2432 0 0 A 48 786 * * * * * * * * * * * 1251 * * * * * * * 48 0 * * * * * * 2432 0 0 R 49 * * * * * * 2325 * * * * 3202 * * 786 3161 * * * * 49 0 * * * * * * 2432 0 0 C 50 * 0 * * * * * * * * * * * * * * * * * * 50 0 * * * * * * 2432 0 0 D 51 * * 1423 * * * * * 3101 * * 1428 * 3843 3851 * * * * * 51 0 * * * * * * 2432 0 0 C 52 * 163 * * * * * * * * * * * * 3225 * * * * * 52 0 * * * * * * 2432 0 0 Q 53 * * * * * * * * * * * 3101 * 3700 3610 2650 823 * * * 53 0 * * * * * * 2432 0 0 T 54 * * * 3202 * * * * * * * * * 3161 * 2325 786 * * * 54 0 * * * * * * 2432 0 0 G 55 3161 3202 * * * 359 * * * * * * * * * * * * * * 55 0 * * * * * * 2432 0 0 V 56 * * * * * * * * * * * * * * * * 2182 359 * * 56 0 * * * * * * 2432 0 0 Y 57 * * * * * * * * * * * * * * * * * * * 0 57 0 * * * * * * 2432 0 0 Y 58 * * * * 2783 * * * * * * * * * * * * * * 226 58 0 * * * * * * 2432 0 0 C 59 * 321 * * * * * * * * * * * * * 2325 * * * * 59 0 * * * * * * 2432 0 0 S 60 3843 * * 3473 * * 3202 * 1374 * * * * 2627 * 3700 3225 * * * 60 0 * * * * * * 2432 0 0 S 61 * * * * * * 1569 * * * * * * * * 1109 * * * 2325 61 0 * * * * * * 2432 0 0 R 62 * * * * * * * * 1071 * 2667 * * * 2582 * * * * 2325 62 0 * * * * * * 2432 0 0 R 63 * * 2151 * * 3851 * * 3610 * 3726 1867 * * 2443 3473 * * * * 63 0 * * * * * * 2432 0 0 K 64 * * * * * * * * 803 * * * * * 1228 * * * * * 64 0 * * * * * * 2432 0 0 H 65 * * * * * * 1778 * * * * * * * * 3101 * * * 756 65 0 * * * * * * 2432 0 0 Y 66 * * * * 2182 * * * * * * * * * * * * * * 359 66 0 * * * * * * 2432 0 0 P 67 * * * * * * * * * * * * 0 * * * * * * * 67 0 * * * * * * 2432 0 0 V 68 * * * * * * * 1030 * * * * * * * * * 971 * * 68 0 * * * * * * 2432 0 0 S 69 * 3101 * * * * * 2325 * * * 3851 * * 3202 1679 2369 * * * 69 0 * * * * * * 2432 0 0 F 70 * 2325 * * 1006 * * * * * * * * * * * * 1726 * * 70 0 * * * * * * 2432 0 0 S 71 * * 3432 1464 * * * * * * * * * 3726 * 3700 1726 3473 * * 71 0 * * * * * * 2432 0 0 K 72 3202 * * 3610 * 1248 * * 1854 * * * * * * 3161 * * * * 72 0 * * * * * * 2432 0 0 P 73 * * * * * * 2182 * * * * * 359 * * * * * * * 73 0 * * * * * * 2432 0 0 S 74 * * 2182 * * 1595 * * * * * * * * * 3700 1428 * * * 74 0 * * * * * * 2432 0 0 L 75 * * * * 2540 * * 3101 * 1778 * 2325 * * * * * * 2182 * 75 0 * * * * * * 2432 0 0 I 76 * * * * * * * 1854 * * * * * 1794 * * * 2221 * 2182 76 0 * * * * * * 2432 0 0 F 77 * * * 1476 3700 * 3726 * * * * * * * * * * * 1662 2540 77 0 * * * * * * 2432 0 0 V 78 * * * * * * * 898 * * 2540 * * * * * * 1778 * * 78 0 * * * * * * 2432 0 0 E 79 * * * 824 * * * * 3726 * * * * 1476 * * * * * * 79 0 * * * * * * 2432 0 0 A 80 2006 * * 1071 * 2325 * * 3726 * * * * * * * * * * * 80 0 * * * * * * 2432 0 0 S 81 * * * * * 3432 * * * * * 1458 * * * 880 * * * * 81 0 * * * * * * 2432 0 0 E 82 * * 2540 670 * * * * * * * 3432 3225 * * * * * * * 82 0 * * * * * * 2432 0 0 Y 83 * * * * * * * * * * * * * * * * * * * 0 83 0 * * * * * * 2432 0 0 Y 84 * * * * * * * * * * * * * * * * * * * 0 84 0 * * * * * * 2432 0 0 P 85 * * * * * * * * * * * * 0 * * * * * * * 85 0 * * * * * * 2432 0 0 A 86 1452 * * 3726 * * * * 1787 * * * * * 3843 2325 * * * * 86 0 * * * * * * 2432 0 0 R 87 * * * * * * 2182 * * * * * * * 359 * * * * * 87 0 * * * * * * 2432 0 0 Y 88 * * * * 1662 * * 2182 * * * * * * * * * * * 1109 88 0 * * * * * * 2432 0 0 Q 89 * * * * * * * * * * * * * 140 3432 * * * * * 89 0 * * * * * * 2432 0 0 S 90 3225 * * * * * * 3432 * * * * * * * 1390 2334 * * 2182 90 0 * * * * * * 2432 0 0 H 91 * * * * * 3225 1109 * * * * 1569 * * 3432 * * * * * 91 0 * * * * * * 2432 0 0 L 92 * * * * * 3432 * * * 1750 2540 * * * * * 3101 1637 * * 92 0 * * * * * * 2432 0 0 M 93 * * * * * * * * * 293 2443 * * * * * * * * * 93 0 * * * * * * 2432 0 0 L 94 * * * * * * * 1687 2325 1029 * * * * * * * * * * 94 0 * * * * * * 2432 0 0 A 95 1293 * * * * 756 * * * * * * * * * * * * * * 95 0 * * * * * * 2432 0 0 V 96 2847 * * 2182 * * 3473 * * * 3610 * * * * * 2380 1854 * * 96 0 * * * * * * 2432 0 0 G 97 * * * * * 0 * * * * * * * * * * * * * * 97 0 * * * * * * 2254 0 0 H 98 * * * * 1524 * 2512 * * * * * 1068 * * * * * * * 98 0 * * * * * * 2254 0 0 S 99 1559 2091 * * * * * * * * * * * * * 1594 * 3402 * * 99 0 * * * * * * 2254 0 0 E 100 * * * 149 * * * * * * * * * * * 3349 * * * * 100 0 * * * * * * 2254 0 0 P 101 3402 * * * * * * * * 2760 * * 400 * * * * * * * 101 0 * * * * * * 2254 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * * * * * 2254 0 0 D 103 * * 0 * * * * * * * * * * * * * * * * * 103 0 * * * * * * 2254 0 0 C 104 * 0 * * * * * * * * * * * * * * * * * * 104 0 * * * * * * 2254 0 0 G 105 * * * * * 0 * * * * * * * * * * * * * * 105 0 * * * * * * 2254 0 0 G 106 * * * * * 0 * * * * * * * * * * * * * * 106 0 * * * * * * 2254 0 0 I 107 * * * * * * * 576 2091 3402 * * * * * * * * * * 107 0 * * * * * * 2254 0 0 L 108 * * * * * * * * * 0 * * * * * * * * * * 108 0 * * * * * * 2177 0 0 R 109 * * * * * * * * * 1958 * * * * 429 * * * * * 109 0 * * * * * * 2177 0 0 C 110 * 0 * * * * * * * * * * * * * * * * * * 110 0 * * * * * * 2177 0 0 Q 111 * * * 2536 * * * 2627 1958 * * 3247 * 1723 * * * * * * 111 0 * * * * * * 2177 0 0 H 112 * * * * * * 0 * * * * * * * * * * * * * 112 0 * * * * * * 2177 0 0 G 113 * * * * * 0 * * * * * * * * * * * * * * 113 0 * * * * * * 2177 0 0 V 114 * * * * * * * * * * * * 2627 * * * * 255 * * 114 0 * * * * * * 2177 0 0 V 115 * * * * * * * 330 * * 3247 * * * * * * 3334 * * 115 0 * * * * * * 2177 0 0 G 116 * * * * * 0 * * * * * * * * * * * * * * 116 0 * * * * * * 2177 0 0 I 117 * * * * * * * 494 * 2627 2966 * * * * * * * * * 117 0 * * * * * * 2177 0 0 V 118 * * * * * * * 2069 * 2627 * * * * * * * 737 * * 118 0 * * * * * * 2177 0 0 S 119 * * * * * * * * * * * * * * * 3334 151 * * * 119 0 * * * * * * 2177 0 0 T 120 655 * * * * * * * * * 1911 * * * * * 3334 * * * 120 0 * * * * * * 2177 0 0 G 121 * * * 2627 * 255 * * * * * * * * * * * * * * 121 0 * * * * * * 2177 0 0 G 122 * * * * * 0 * * * * * * * * * * * * * * 122 0 * * * * * * 2177 0 0 N 123 * * 2166 1284 * * * * * * * 2290 * * * 2627 * * * * 123 0 * * * * * * 2177 0 0 G 124 * * * * * 364 * * * * * 2166 * * * * * * * * 124 0 * * * * * * 2177 0 0 L 125 * * * * * * 1958 3247 * 1723 * * * * * * * 2536 * 2627 125 0 * * * * * * 2177 0 0 V 126 * * * * * * * * * * * * * * * * * 0 * * 126 0 * * * * * * 2177 0 0 G 127 1080 2627 * * * 1454 * * * * * * * * * * * * * * 127 0 * * * * * * 2177 0 0 F 128 * * * * 0 * * * * * * * * * * * * * * * 128 0 * * * * * * 2177 0 0 A 129 661 * * * * * * 1958 * * * * * * * 3181 * * * * 129 0 * * * * * * 2177 0 0 D 130 * * 0 * * * * * * * * * * * * * * * * * 130 0 * * * * * * 2177 0 0 V 131 * * * * * * * 845 * 1958 * * * * * * * 2427 * * 131 0 * * * * * * 2177 0 0 R 132 * * * * * * * * * * * * * * 0 * * * * * 132 0 * * * * * * 2177 0 0 D 133 * * 784 * * * 2950 * 2966 * * * * 2627 * * * * * * 133 0 * * * * * * 2177 0 0 L 134 * * * * 1958 * * * * 429 * * * * * * * * * * 134 0 * * * * * * 2177 0 0 L 135 * * * 2627 3419 * 2950 * * 1881 * * * 2966 * * * * 3247 3181 135 0 * * * * * * 2177 0 0 W 136 3181 1254 * * * * * * * * * * * * * * * 3247 1454 * 136 0 * * * * * * 2177 0 0 L 137 1958 * * * * * * 2627 * 1454 * * * * * * * * * 2213 137 0 * * * * * * 2177 0 0 D 138 2627 * 2376 632 * * * * * * * * * * * * * * * * 138 0 * * * * * * 2177 0 0 E 139 * * 1911 446 * * * * * * * * * * * * * * * * 139 0 * * * * * * 2177 0 0 E 140 * * 2536 810 * * * * * * * * * 1958 * * * * * * 140 0 * * 0 * * * 2177 0 0 //