HHsearch 1.5 NAME c6zqiB_ FAM FILE c6zqiB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6zqiB_.a3m DATE Sat Jan 23 08:30:02 2021 LENG 101 match states, 101 columns in multiple alignment FILT 14 out of 18 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.1 EVD 0.3952 -1.3196 SEQ >ss_dssp CEEEESSSCEEEECCSSSCSCCEEEECSSSEEEEEECCSSCCCSSSCEEEEEECBCCTTSCCSSCSEEESSSCEEEEEECCSTTSSCCCCCCCCCCCCCC C >sa_dssp DEDDDEEECBCADADDECDEDDCEBEBEECEAEABADBEEBBCECECDDDCDBDDDDEEEECEEDCACADCDCADABBACBDEEEECDDEEEEEEEEEEE E >ss_pred CEEEEECCEEEEEECHHHCCCEEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCEECCEEEECCC C >ss_conf 9789348989997435651426999668746258999940576487605564201378777863114762424999845225888885300102343058 9 >Consensus xxvxxxgxxxxmxxxxxDigkxixvxtxxGxxxCxxxAxDiGxxCedtitYxCpxlxxxeEPxDiDCwCxxvxvxVxYgxCxxxxxgxxrRsrRSvxixx H >c6zqiB_ VEVTKKGDTYYMFADKKDAGKVVTFETESGPNRCSIQAMDIGHMCPATMSYECPVLEPQYEPEDVDCWCNSTAAWIVYGTCTHKTTGETRRSRRSITLPS H >UniRef50_P33478(117-212:3396) Methyltransferase/RNA-directed RNA polymerase NS5 n=6644 Tax=root RepID=POLG_DEN1S E=3e-33 s/c=1.48 id=45% cov=96% --LTTRGGEPHMIVSKQEREKSLLFKTSVGVNMCTLIAMDLGELCEDTMTYKCPRI-TEAEPDDVDCWCNATDTWVTYGTCSQ--TGEHRRDKRSVALAP H >UniRef50_B9TRQ0(120-217:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=6e-31 s/c=1.37 id=38% cov=88% ----------LMTVEPSDIGKAIAVPTPSGNVTCYVQANTVGEMCDHSVTYLCPKVD--VEREDVDCWCHGGEAYVRYGKC-RRGKNRAQRSRRSVGISA H >UniRef50_Q9JAD5(106-199:3379) Polyprotein n=215 Tax=root RepID=Q9JAD5_9FLAV E=1e-26 s/c=1.28 id=33% cov=93% MQVSQNGDGWLLSPDQMDIGK--TYKVGTG--LCIFSSLDIGVPCNLTITYACVTLANTEEPVDLDCFCRDVqNVWVKYPLCKPGG----HRLKRSLSIT EH >UniRef50_UPI0000167A20(5-98:166) PreM protein n=2 Tax=Montana myotis leukoencephalitis virus RepID=UPI0000167A20 E=2e-24 s/c=1.20 id=36% cov=93% MEIEQQGTSLVIKPQRSDVGRPVRVSTG----YCMFSAMDIGITCEKTIQYECVTLTTSEEPFDVDCYCrNVTNVLVEYSTCNPT----VERAKRSLVIQ DH >UniRef50_P29838(122-212:776) Envelope protein E (Fragment) n=153 Tax=Flavivirus RepID=POLG_LANVY E=1e-18 s/c=1.03 id=34% cov=86% --------SMVIRAEGRDAATQVRVENGT----CVILATDMGSWCDDSLAYECVTIDQGEEPVDVDCFCRGVEkVTLEYGRCGRREGSRSRRS---VLIP SH >UniRef50_UPI0000167A11(1-87:87) PreM protein n=1 Tax=Modoc virus RepID=UPI0000167A11 E=5e-14 s/c=0.90 id=28% cov=86% IEVVKNNGGWLMKPRLQDTGSTV----PVGKGSCTFTSLDVGYECDYKIGYDCVTLTSTEDPNGIDCYCRGVDmVRVEYPLCK-KGSNRVRR-------- -- >UniRef50_C3VP79(129-223:3435) Polyprotein n=26 Tax=Flaviviridae RepID=C3VP79_9FLAV E=6e-36 s/c=1.59 id=39% cov=89% ----------YMNVTGSDVGTWLSIKTAVGNGSCIVMATDVGTWCEDTVTYLCPKLDGAAEPDDIDCWCKVVSVYVTYGRCRRD--GVSRRSRRSVALAP H >UniRef50_P05769(126-224:3434) Methyltransferase/RNA-directed RNA polymerase NS5 n=2839 Tax=Flavivirus RepID=POLG_MVEV5 E=5e-33 s/c=1.42 id=47% cov=89% ----------MMTVNATDIADVIAIPTPKGPNQCWIRAIDIGFMCDDTITYECPKLESGNDPEDIDCWCDKQAVYVNYGRCTRAR--HSKRSRRSITVQT H >UniRef50_Q1X881(122-217:3412) Methyltransferase/RNA-directed RNA polymerase NS5 n=397 Tax=Flavivirus RepID=POLG_YEFVN E=3e-30 s/c=1.38 id=35% cov=95% VTLVRKNRWLLLNVTAEDLGKTFSV----GTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCWCYGVeNVRVAYGRC--DAVGRSKRSRRAIDLP TH # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 2387 * * 1467 * * * * * * 1161 * * 1 0 * * * * * * 2414 0 0 E 2 * * * 714 * * * * * * * * * 2502 * * 2227 * * * 2 0 * * * * * * 2414 0 0 V 3 * * * * * * * 2893 * 1634 * * * * * * * 881 * * 3 0 * * * * * * 2750 0 0 T 4 * * * 2893 * * * * * * 3019 * * * * 3091 1639 1720 * * 4 0 * * * * * * 2750 0 0 K 5 * * * * * * * * 1726 * * 3019 * 1989 2646 * 2621 * * * 5 0 * * * * * * 2750 0 0 K 6 * * 3019 * * * * * 1652 * * 1937 * 2893 2621 * * * * * 6 0 * * * * * * 2750 0 0 G 7 * * * * * 522 * * * * * 1720 * * * * * * * * 7 0 * * * * * * 2750 0 0 D 8 * * 1858 * * 1218 * * * * * * * * 2646 * 2893 * * * 8 0 * * * * * * 2750 0 0 T 9 * * * 2770 * 2114 * * * * * * * * * 2048 2823 * 2063 * 9 0 * * * * * * 2880 0 0 Y 10 * * * * * * * 3395 * 2106 2457 * 2868 * * * * * 2193 2890 10 0 * * * * * * 2868 0 0 Y 11 * * * * 3728 * 3490 * * 1617 2655 * * * * * * 2310 * 2747 11 0 * * * * * * 3168 0 0 M 12 * * * * * * * 2347 * 2140 794 * * * * * * * * * 12 0 * * * * * * 3203 0 0 F 13 * * * * 3711 * * 3561 1830 * * 2273 * * 3109 3774 2627 * * * 13 0 * * * * * * 3203 0 0 A 14 1966 * * * * * * * * * * * 1812 * * * * 1122 * * 14 0 * * * * * * 3203 0 0 D 15 * * 2742 2815 * * * * * * * 3659 * 3765 3898 2823 1525 * * * 15 0 * * * * * * 3203 0 0 K 16 2627 * * * * 2503 * * 2153 3898 * * 3596 2810 3765 * * 3815 * * 16 0 * * * * * * 3203 0 0 K 17 3815 * * 3596 * * * * 2777 * 3774 * * 2720 3109 2206 3659 * * 3974 17 0 * * * * * * 3203 0 0 D 18 * * 128 3561 * * * * * * * * * * * * * * * * 18 0 * * * * * * 3203 0 0 A 19 2379 * * * * * * 1436 * 3596 * * * * 3561 * 3898 2296 * * 19 0 * * * * * * 3203 0 0 G 20 2358 * * 3561 * 473 * * * * * * * * * * * * * * 20 0 * * * * * * 3203 0 0 K 21 * * 3659 * * * * * 728 * * * * * 3765 3016 3061 * * * 21 110 * 3774 * * * * 3203 0 0 V 22 3521 * * 3736 * * * * * * * * 3599 3013 * 3487 1677 2601 3951 * 22 0 * * * * * 0 3128 0 1000 V 23 * * * * 2678 * * 1609 * 2701 * * * * * * * 1466 * * 23 111 * 3759 * * 0 * 3128 0 1000 T 24 2526 * 3878 * * * 3757 * * 3486 * * * * 2289 2706 2075 * * * 24 0 * * * * * 0 3152 0 1000 F 25 * * * * 2560 * * 2203 * * * * * * * * * 907 * 3642 25 135 * 3489 * * * 0 3152 0 1000 E 26 * * * 2663 * * * * 1960 * 3705 * 1887 3894 3555 3543 * * * * 26 0 * * * * * 0 3046 0 1506 T 27 * * * * * * * * * * 3635 1750 * * * * 902 3524 * * 27 0 * * * * 984 1016 3046 0 1506 E 28 3893 * * 3561 * 1214 * * * * * * 1996 * 3739 3452 * * * * 28 116 * 3691 * * * 0 3112 0 1000 S 29 * * * * * * 3652 * 3434 * * * * * * 2434 1363 1977 * * 29 514 * 1737 * * 971 1029 3026 0 1558 G 30 * * * * * 0 * * * * * * * * * * * * * * 30 182 * 3075 * * * 0 2940 0 2104 P 31 * * * * * * * * 2745 * * 1549 1971 * * * 2984 2971 * * 31 0 * * * * * 0 2779 0 2231 N 32 * * * * * 1388 * 3137 * * * 1386 * * * * * 3041 * * 32 0 * * * * 1528 614 2779 0 2231 R 33 * * * * * * * * * 3226 3242 3209 * 3305 3223 1917 3264 * * 3292 33 0 * * * * 0 * 2992 0 1896 C 34 * 0 * * * * * * * * * * * * * * * * * * 34 0 * * * * * * 3203 0 0 S 35 * * * * * * * 2904 * * 3765 * * * * 3711 1746 1963 3659 3596 35 0 * * * * * * 3203 0 0 I 36 * * * * 1812 * * 1882 * 3561 * * * * * * 3596 1855 * * 36 0 * * * * * * 3203 0 0 Q 37 * * * * * * * 3561 * 3109 3010 3596 * 2652 3659 2200 2872 * * * 37 0 * * * * * * 3203 0 0 A 38 502 * * * * * * 3596 * * * * * * * 2243 * * * * 38 0 * * * * * * 3203 0 0 M 39 * * * * * * * 3659 * 1767 1717 3596 * * * * 2503 3974 * * 39 0 * * * * * * 3203 0 0 D 40 * * 261 3596 * * * * * * * * * * * * 3596 * * * 40 0 * * * * * * 3203 0 0 I 41 3596 * * * * * * 1422 * 3561 3109 * * * * * * 1542 * * 41 0 * * * * * * 3203 0 0 G 42 * * * * * 125 * * 3596 * * * * * * * * * * * 42 0 * * * * * * 3203 0 0 H 43 * * * 2158 3659 * 3711 3765 * * * 2892 * * 3846 4075 4046 3774 * 2739 43 0 * * * * * * 3203 0 0 M 44 * * * 2856 * * * * * 2696 2070 * 3774 * * * 3765 * 1632 * 44 0 * * * * * * 3203 0 0 C 45 * 0 * * * * * * * * * * * * * * * * * * 45 0 * * * * * * 3203 0 0 P 46 * * 1507 1266 * * * * * * * 3774 2652 * * * * * * * 46 0 * * * * * * 3203 0 0 A 47 3711 * 846 3815 * * 3596 * 3765 3774 * * * * * * * * * 3898 47 0 * * * * * * 3203 0 0 T 48 * * * * * * * * 3898 * * * * * * 1511 948 * * 3974 48 0 * * * * * * 3203 0 0 M 49 * * * * * * * 1517 * 4075 1667 * * * * * * 1855 * * 49 0 * * * * * * 3203 0 0 S 50 4075 * * 3596 * 3898 * 3974 * * * * * 3765 * 3711 792 * * * 50 0 * * * * * * 3203 0 0 Y 51 * * * * * * * * * * * * * * * * * * * 0 51 0 * * * * * * 3203 0 0 E 52 3774 * 3898 1794 * * * * 3561 2233 * 3596 3815 3974 * 4145 * * * * 52 0 * * * * * * 3203 0 0 C 53 * 0 * * * * * * * * * * * * * * * * * * 53 0 * * * * * * 3203 0 0 P 54 * * * * * * * 3815 * * * * 738 * * * * 1601 * * 54 0 * * * * * * 3203 0 0 V 55 * * 3846 * * * * * 2169 * * 3596 * * 3561 * 1107 3711 * * 55 0 * * * * * * 3203 0 0 L 56 * * * * * * * 1888 * 628 * * * * * * * 3596 * * 56 128 * 3561 * * * * 3203 0 0 E 57 2702 * 1458 2530 * * * * * * * * * * * 3489 2184 * * * 57 133 * 3510 * * 0 * 3099 0 1000 P 58 3743 * * 3870 * 3904 * * * * * 3678 2517 2986 * 2630 2003 * * * 58 0 * * * * * 0 3109 0 1000 Q 59 3904 * * 2735 * 2700 * * * * * 2739 * 3551 3483 3675 2144 * * * 59 122 * 3619 * * 0 * 3109 0 1000 Y 60 2629 * * 791 * * * * * * * 3557 * * * * * 3411 * 3619 60 0 * * * * 0 * 3165 0 1000 E 61 * * 2774 340 * * * * * * * 3974 * * * * * * * * 61 0 * * * * * * 3203 0 0 P 62 * * * * * * * * * * * * 238 * 2715 * * * * * 62 0 * * * * * * 3203 0 0 E 63 * * 1749 1728 3765 * * * * * * 3898 * * * * * 1943 * * 63 0 * * * * * * 3203 0 0 D 64 * * 100 * * 3898 * * * * * * * * * * * * * * 64 0 * * * * * * 3203 0 0 V 65 * * * * * * * 1243 * 2794 * * * * * * * 1207 * * 65 0 * * * * * * 3203 0 0 D 66 * * 0 * * * * * * * * * * * * * * * * * 66 0 * * * * * * 3203 0 0 C 67 * 0 * * * * * * * * * * * * * * * * * * 67 0 * * * * * * 3203 0 0 W 68 * * * * 1943 * * * * * * * * * * * * * 738 2830 68 0 * * * * * * 3203 0 0 C 69 * 0 * * * * * * * * * * * * * * * * * * 69 110 3765 * 0 * * * 3203 1000 0 N 70 * * 3659 * * * 3596 * 4046 * * 2091 * * 1612 3846 * * * 2773 70 0 * * * * * * 3203 0 0 S 71 3561 * 2794 * * 1054 * * 3659 * * * * * * 3711 * 2899 * * 71 0 * * * * * * 3203 0 0 T 72 * * * * * 2715 * * * * * * * 3659 * * 2091 905 * * 72 357 2188 * 0 * * * 3203 1714 0 A 73 2685 * 1847 2815 * * * * 3815 * * 1771 * * * 4046 * * * * 73 291 2451 * 0 * * * 3203 1553 0 A 74 2652 * * * * * * * * * * 3815 * * * * 3561 546 * * 74 0 * * * * * * 3203 0 0 W 75 * * * * * * * * 4145 3765 * * * * 2739 * 4075 3815 2094 1492 75 0 * * * * * * 3203 0 0 I 76 * * * * * * * 3711 * 3109 3815 * * * * * * 441 * * 76 0 * * * * * * 3203 0 0 V 77 3596 * * 1963 * * 3846 * 3774 * * 3659 * * 3596 * 2259 2762 * * 77 106 3815 * 0 * * * 3203 1000 0 Y 78 * * * * * * * * * * * * * * * * * * * 0 78 0 * * * * * * 3203 0 0 G 79 * * * * * 483 * * * * * * 2243 * * 3765 * * * * 79 0 * * * * * * 3203 0 0 T 80 * * * * * * * * 3596 2835 * * * * 1085 * 1710 * * * 80 0 * * * * * * 3203 0 0 C 81 * 0 * * * * * * * * * * * * * * * * * * 81 386 * 2090 * * * * 3203 0 0 T 82 * * * * * 2734 * * 1503 * * 3504 * * 3500 3185 2249 * * * 82 136 * 3477 * * 609 1538 2953 0 1791 H 83 * * * * * * 2588 * * * * * 2534 2493 1049 * * * * * 83 148 * 3363 * * 0 * 3046 0 1506 K 84 3558 * 2134 * * 2673 * * 2641 * * 3718 * 3981 2724 * 3653 * * * 84 355 * 2196 * * * 0 3099 0 1000 T 85 2368 * * 3587 * 1294 * * * * * * * * 3230 * 2261 * * * 85 519 * 1727 * * 1916 444 2917 0 1984 T 86 * * * * * 2309 * * 2951 * * 3074 * * * 2810 1857 2928 * * 86 0 * * * * 1578 589 2822 0 2392 G 87 * * * * * 709 * * * * * 2189 * * * 2565 * * * * 87 127 * 3567 * * 1626 565 2815 0 2038 E 88 * * * 2213 * * 3293 * * * * * * 3494 1252 * 3434 3625 * * 88 0 * * * * 1979 422 2881 0 1904 T 89 3393 * * * * * 3312 * 3573 * * * 3644 * * 1485 3400 2409 * * 89 0 * * * * 1601 577 3018 0 1685 R 90 * * * 3545 * * 3481 * 2484 * * * * 3485 845 * * * * * 90 0 * * * * 0 * 3128 0 1491 R 91 * * * * * * * * * * * * * * 0 * * * * * 91 0 * * * * * * 3203 0 0 S 92 3627 * 3486 * * 4037 * * * 3642 * 3878 * * * 879 3700 * * * 92 93 * 3995 * * * * 3152 0 0 R 93 * * * * * * * * 1263 * * * * * 777 * * * * * 93 0 * * * * * 0 3130 0 1000 R 94 * * * * * * * * * * * * * * 0 * * * * * 94 0 * * * * * 0 3130 0 1000 S 95 3428 * 3633 * * * * * * * * * * * * 275 * * * * 95 0 * * * * 0 * 3130 0 1000 I 96 * * * * * * * 1975 * 2635 * * * * * * * 774 * * 96 0 * * * * * * 3152 0 0 T 97 1759 * 3489 * * 3496 * * * 3995 * * * * * 3642 2046 2817 * * 97 0 * * * * * * 3152 0 0 L 98 * * * * * * * 932 * 1355 * * * * * * * 3558 * * 98 0 * * * * * * 3152 0 0 P 99 2136 * * * * * * * * * * * 1771 2042 * 3496 2755 * * * 99 0 * * * * * * 3152 0 0 S 100 3496 * 2663 3642 * * * * * * * 3878 2136 * * 2805 2090 * * * 100 0 * * * * * * 3152 0 0 H 101 * * * * * * 0 * * * * * * * * * * * * * 101 0 * * 0 * * * 3152 0 0 //