HHsearch 1.5 NAME c6uueA_ FAM FILE c6uueA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6uueA_.a3m DATE Sat Jun 20 08:34:32 2020 LENG 91 match states, 91 columns in multiple alignment FILT 12 out of 16 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.3938 -1.0387 SEQ >ss_dssp CCEEEEEEETTEEEEEETTCCCCGGGHHHHHHHHHHHHHHSCGGGSCSEEEEEECSSSEEEEEEECCGGGGGGCEEEEEESSCCCHHHHCC >sa_dssp EEDCECCEBEEBDABADDECDEAEEBAECADDAADCACDDCEEECDBDDABACDBEEDDACACACBDEECDECDDECEACDEEEECCEDAE >ss_pred CCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCHHHCC >ss_conf 9705768774838984158832335678999999999631335533058999648788599998617888997279999835787033119 >Consensus sxFrxlxxvxnVxVxtPvNhPxlsxWxPxIexCVxkYxxxHxxxxxPveVIaTgGQxNqixLNYIHsxxxsxenvTlrllxxqxdxxxiCx >c6uueA_ SKFRLLENVNGVEVLTPLNHPPLQAWXPSIRQCVNKYAETHTGDSAPVKVIATGGQGNQLILNYIHTLPHSNENVTLRIFSEQNDLGSICK >UniRef50_Q9RHQ9(204-292:292) Transmembrane regulatory protein ToxR n=2 Tax=Grimontia hollisae RepID=Q9RHQ9_VIBHO E=2e-09 s/c=0.71 id=31% cov=99% --FREILTIENVPVYIPVTNARISQWQPMVQRCVEKYIGFYGKERELEEVIVTGGQDNHISLNYIHSAKDADDNITYVLLTSQQGSDAICR >UniRef50_P15795(204-294:294) Cholera toxin transcriptional activator n=121 Tax=Gammaproteobacteria RepID=TOXR_VIBCH E=1e-32 s/c=1.54 id=53% cov=101% TSFKPLTVVDGVAVNMPNNHPDLSNWLPSIELCVKKYNEKHTGGLKPIEVIATGGQNNQLTLNYIHSPEVSGENITLRIVANPNDAIKVCE >UniRef50_Q1Z5R8(203-291:291) Transcription activator ToxR n=4 Tax=Photobacterium RepID=Q1Z5R8_PHOPR E=1e-30 s/c=1.49 id=44% cov=99% --FAPLLTVDGITVSTTKIHPVLSDWKPMISECVTTYLESHQDKIRPVDIIVTGGQNNSIWLNYIHDTSVPNENVTLRLLTSQEDNSKLCQ >UniRef50_D0YZ11(210-299:299) Transcriptional activator ToxR n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YZ11_LISDA E=2e-29 s/c=1.43 id=47% cov=99% --FIPLFSVKGVQVVTPNNNPIMNDWQSLISTCITSYLDNHQQESKPVKVIVTGGQSNQVWLNYIHTAQTANENVTLRLLTSHEDNANLCR >UniRef50_B5FBZ3(205-292:293) Toxin transcriptional activator ToxR n=3 Tax=Vibrio fischeri RepID=B5FBZ3_VIBFM E=2e-28 s/c=1.43 id=39% cov=98% --FVQVANYDNTPVFVPVNHPSIEQWKPLIEQCTNFYNSKHTDSLKPIEVIATSGQPNQITLNYIHSEEHSDQSISVRLLIDQKGVDKVC- >UniRef50_Q2MCI1(137-194:199) Transmembrane regulatory protein (Fragment) n=20 Tax=Vibrio RepID=Q2MCI1_9VIBR E=1e-15 s/c=1.45 id=56% cov=65% SKFRQLAVYNNIVVNTPINHPDLTNWLPSIEKCVKKYNKSHTGELAPKEVIVTGGQKN--------------------------------- >UniRef50_Q5UEL8(145-201:202) Transmembrane regulatory protein (Fragment) n=42 Tax=Vibrio RepID=Q5UEL8_9VIBR E=4e-14 s/c=1.39 id=50% cov=64% SEFKTLAEVDGVKVQSPVNHPDLSSWLPAIEKCVLRYNTNHTGMLKPTEVIATGGQP---------------------------------- >UniRef50_Q9F295(81-118:118) ToxR protein (Fragment) n=1 Tax=Listonella anguillarum serovar O1 RepID=Q9F295_VIBAN E=7e-07 s/c=1.45 id=49% cov=43% SKFKQIAVYNNIVVNTPINHPDLNKWLPSIEKCVKKYN----------------------------------------------------- >UniRef50_Q0PEV9(93-183:183) ToxR (Fragment) n=8 Tax=Vibrio parahaemolyticus RepID=Q0PEV9_VIBPA E=7e-33 s/c=1.55 id=59% cov=101% SQFRQIGEYQNVPVMTPVNHPQINNWLPSIEQCIERYVKHHAEDSLPVEVIATGGQNNQLILNYIHDSNHSYENVTLRIFAGQNDPTDICK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 270 2549 * * * 1 0 * * * * * * 1887 0 0 K 2 * * * 2657 * * * * 958 * * * * 2461 * 2786 * * * * 2 0 * * * * * * 1918 0 0 F 3 * * * * 0 * * * * * * * * * * * * * * * 3 0 * * * * * * 2990 0 0 R 4 3227 * * * * * * 2627 2386 * * * * * 1193 * * 3287 * * 4 0 * * * * * * 2990 0 0 L 5 * * * 2758 * * * * * 3537 * * 1582 1503 * * 3660 * * * 5 0 * * * * * * 2990 0 0 L 6 * * * * * * * 1837 * 861 3899 * * * * * * 3287 * * 6 0 * * * * * * 2990 0 0 E 7 1528 * * 3537 2627 3552 * * * 1974 * * * * * * 3934 * * * 7 0 * * * * * * 2990 0 0 N 8 * * * 2605 * * * * * * * 2407 * * * 2627 1974 2117 * * 8 0 * * * * * * 2990 0 0 V 9 * * * * * * * 2758 * * * * * * * * * 1002 * 1503 9 0 * * * * * * 2990 0 0 N 10 * * 1499 2758 * * * * 2627 * * 1992 * 3552 * * * * * * 10 0 * * * * * * 2990 0 0 G 11 * * * * * 1002 * * * * * 998 * * * * * * * * 11 0 * * * * * * 2990 0 0 V 12 * * * * * * * 1878 * * * * * * * * 3287 677 * * 12 0 * * * * * * 2990 0 0 E 13 3934 * * 3537 * * * * 3660 * * * 1576 2627 * * 3227 2598 * * 13 0 * * * * * * 2990 0 0 V 14 * * * * * * * * * * * * * * * * * 0 * * 14 0 * * * * * * 2990 0 0 L 15 * * * * 3287 * * * * 3537 3552 2117 * 3660 * 3227 * 2627 * 2758 15 0 * * * * * * 2990 0 0 T 16 * * * * * * * 2758 * * 3934 * * * * 3660 724 3287 * * 16 0 * * * * * * 2990 0 0 P 17 * * * * * * * * * * * * 163 * * * 3227 * * * 17 0 * * * * * * 2990 0 0 L 18 * * * * * * * 2598 3227 3537 * 2138 * * * * * 1270 * * 18 0 * * * * * * 2990 0 0 N 19 * * * * * * * 3227 * * * 424 * * * * 2758 * * * 19 0 * * * * * * 2990 0 0 H 20 * * * * * * 535 * * * * 1691 * * * * * * * * 20 0 * * * * * * 2990 0 0 P 21 2758 * * * * * * * * * * * 231 * * * * * * * 21 0 * * * * * * 2990 0 0 P 22 * * 1691 * * * * 2627 * * * * 3537 3552 2758 3287 * 3227 * * 22 0 * * * * * * 2990 0 0 L 23 * * * * * * * 1576 * 992 2627 * * * * * * * * * 23 0 * * * * * * 2990 0 0 Q 24 * * * 3287 * * * * * * * 1766 * 3537 * 1325 3079 * * * 24 0 * * * * * * 2990 0 0 A 25 3537 * 1896 * * * * * 4416 * * 1894 * 1999 * 3660 * * * * 25 0 * * * * * * 2990 0 0 W 26 * * * * * * * * * * * * * * * * * * 0 * 26 0 * * * * * * 2990 0 0 X 27 * * * * * * * * 2126 1188 * * * 1590 * * * * * * 27 0 * * * * * * 2900 0 0 P 28 * * * * * * * * * * * 3642 255 * * 3613 * * * * 28 0 * * * * * * 2990 0 0 S 29 3660 * * * * * * * * 1920 1974 * * * * 1578 * * * 3899 29 0 * * * * * * 2990 0 0 I 30 * * * * * * * 349 * * * * * * * 3899 * 2758 * * 30 0 * * * * * * 2990 0 0 R 31 * * * 1008 * * * * * * * * * 2758 3537 1896 * * * * 31 0 * * * * * * 2990 0 0 Q 32 * * * 3227 * * * * 2033 3934 * * * 1869 2758 * 2627 * * * 32 0 * * * * * * 2990 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 2990 0 0 V 34 * * * * * * * 2017 * * * * * * * * 3287 621 * * 34 0 * * * * * * 2990 0 0 N 35 * * * 2101 * * * * 2117 3660 * 2407 * * * * 1896 * * * 35 0 * * * * * * 2990 0 0 K 36 * * * * 3287 * * * 1106 * * * * * 2605 2627 3227 * * * 36 0 * * * * * * 2990 0 0 Y 37 * * * * * * * * * * * * * * * * * * * 0 37 0 * * * * * * 2990 0 0 A 38 3537 * * * * * * 2758 * 1896 * 1279 * * * * * 3552 * * 38 0 * * * * * * 2990 0 0 E 39 * * 3609 1861 * 2751 * * 2701 * * 2708 * * * 3262 3589 * * * 39 0 * * * * * * 2684 0 0 T 40 * * * * 2751 * 3504 * 2516 * * 1952 * * * 2041 3523 * * * 40 0 * * * * * * 2684 0 0 H 41 * * * * * * 232 * * * * * * * * * * * * 2751 41 0 * * * * * * 2684 0 0 T 42 3504 * * * * 2751 * * * * * * * 1770 * * 1089 * * * 42 0 * * * * * * 2684 0 0 G 43 * * 2171 3504 * 1451 * * 2751 * * * * 2511 * * * * * * 43 0 * * * * * * 2684 0 0 D 44 * * 2514 1154 * 3824 * * 3087 * 3589 * * * * 3262 * * * * 44 0 * * * * * * 2684 0 0 S 45 * * * * * * * 3087 * 1384 * * * * 2751 1512 * * * * 45 0 * * * * * * 2684 0 0 A 46 2511 * * 2687 * * * * 1133 3433 * * * * 3049 * * * * * 46 0 * * * * * * 2703 0 0 P 47 * * * * * * * * * 2687 * * 243 * * * * * * * 47 0 * * * * * * 2703 0 0 V 48 * * * 2687 * * * 2426 3590 * * * * * * * 3498 1038 * * 48 0 * * * * * * 2703 0 0 K 49 * * 3049 724 * * * * 1870 * * * * * * * * * * * 49 0 * * * * * * 2703 0 0 V 50 * * * * * * * 3049 * * * * * * * * * 186 * * 50 0 * * * * * * 2703 0 0 I 51 * * * * * * * 0 * * * * * * * * * * * * 51 0 * * * * * * 2703 0 0 A 52 849 * * * * * * * * * * * * * * * * 1168 * * 52 0 * * * * * * 2703 0 0 T 53 * * * * * * * * * * * * * * * * 0 * * * 53 0 * * * * * * 2703 0 0 G 54 * * * * * 331 * * * * * * * * 3390 3188 * * * * 54 0 * * * * * * 2703 0 0 G 55 * * * * * 0 * * * * * * * * * * * * * * 55 0 * * * * * * 2703 0 0 Q 56 * * * 3390 * * * * * * * * * 145 * * * * * * 56 0 * * * * * * 2703 0 0 G 57 * * 2624 * * 3328 * * 3506 * * 1679 2229 * * 3005 * * * * 57 0 * * * * * * 2665 0 0 N 58 * * * * * * * * * * * 0 * * * * * * * * 58 0 * * * * * * 2569 0 0 Q 59 * * * * * * 2493 * * * * * * 560 * 2796 * * * * 59 0 * * * * * * 2487 0 0 L 60 * * * * * * * 1070 * 1388 * * * * * * * 2822 * * 60 0 * * * * * * 2487 0 0 I 61 * * * * * * * 1971 * * * * * * * 2493 1827 * 1809 * 61 0 * * * * * * 2487 0 0 L 62 * * * * * * * * * 0 * * * * * * * * * * 62 0 * * * * * * 2487 0 0 N 63 * * * * * * * * * * * 0 * * * * * * * * 63 0 * * * * * * 2487 0 0 Y 64 * * * * * * * * * * * * * * * * * * * 0 64 0 * * * * * * 2487 0 0 I 65 * * * * * * * 0 * * * * * * * * * * * * 65 0 * * * * * * 2487 0 0 H 66 * * * * * * 0 * * * * * * * * * * * * * 66 0 * * * * * * 2487 0 0 T 67 * * 1878 * * * * * * * * * * * * 1122 1897 * * * 67 0 * * * * * * 2487 0 0 L 68 1648 * * 2692 * * * * * 2976 * * 2976 * * 2966 2796 * * * 68 0 * * * * * * 2487 0 0 P 69 * * * 1827 * * * * 2493 * * 2966 2976 2822 * 2796 * * * * 69 0 * * * * * * 2487 0 0 H 70 * * 2493 * * * 1287 * * * * * * * * * 2822 1883 * * 70 0 * * * * * * 2487 0 0 S 71 1648 * * * * * * * * * * * 2796 * * 897 * * * * 71 0 * * * * * * 2487 0 0 N 72 * * 1589 * * 2976 * * * * * 1277 * * * * * * * 2966 72 0 * * * * * * 2487 0 0 E 73 * * 2493 583 * * * * * * * * * 2692 * * * * * * 73 0 * * * * * * 2487 0 0 N 74 * * * * * * * * * * * 243 * * * 2692 * * * * 74 0 * * * * * * 2487 0 0 V 75 * * * * * * * 1122 * * * * * * * * * 888 * * 75 0 * * * * * * 2487 0 0 T 76 * * * * * * * * * * * * * * * 2692 243 * * * 76 0 * * * * * * 2487 0 0 L 77 * * * * * * * * * 583 * * * * * * * 2692 * 2493 77 0 * * * * * * 2487 0 0 R 78 * * * * * * * * * * * * * * 282 * * 2493 * * 78 0 * * * * * * 2487 0 0 I 79 * * * * * * * 1388 * 695 * * * * * * * * * * 79 0 * * * * * * 2487 0 0 F 80 * * * * 1971 * * * * 695 * * * * * * * 2976 * * 80 0 * * * * * * 2487 0 0 S 81 1971 * * * * * * 2692 * * * * * * * 2976 1111 * * * 81 0 * * * * * * 2487 0 0 E 82 * * 2692 2976 * 2966 * * * * * 2976 * * * 1111 * * * * 82 0 * * * * * * 2487 0 0 Q 83 * * * * * * 2822 * * * * * 2976 451 * * * * * * 83 0 * * * * * * 2487 0 0 N 84 * * * 1809 * * * * 2692 * * 1388 * 2493 * * * * * * 84 0 * * * * * * 2487 0 0 D 85 * * 583 * * 1589 * * * * * * * * * * * * * * 85 0 * * * * * * 2487 0 0 L 86 2976 * * * * * * * * 2976 * 1809 2966 * * 2493 * 2692 * * 86 0 * * * * * * 2487 0 0 G 87 2822 * 1589 * * 2976 * 2976 * * * * * * * 2796 2966 * * * 87 0 * * * * * * 2487 0 0 S 88 2493 * 2966 * * * * * 1232 * * 2822 * * * 2976 * * * * 88 0 * * * * * * 2487 0 0 I 89 * * * * * * * 1208 * 1809 * * * * * * * 1827 * * 89 0 * * * * * * 2487 0 0 C 90 * 0 * * * * * * * * * * * * * * * * * * 90 0 * * * * * * 2487 0 0 K 91 * * * 2644 * * * * 1722 * * * * 2578 1437 * * * * * 91 0 * * 0 * * * 2351 0 0 //