HHsearch 1.5 NAME c6pnjj_ FAM FILE c6pnjj_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6pnjj_.a3m DATE Sat Feb 15 08:29:07 2020 LENG 43 match states, 43 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.4649 2.0065 SEQ >ss_dssp CTTTTTTTTTSHHHHTTHHHHGGGHHHHTTTSSCSCCCTTSCC >sa_dssp EEEEEEEEDECEECDDDEDEEEDCDDEDDDEEDEDEDEEEDEE >ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC >ss_conf 9468999961170899999999999999999761531310369 >Consensus eaxyxxxylssapixatxalixxsvilixlnxxfpglqygtxf >c6pnjj_ EARYLFRYLSSAPVVATLALIIISVILIVLNYLFPGLQYGTFF >UniRef50_B4WP25(2-42:46) Photosystem I reaction center subunit IX n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP25_9SYNE E=5e-08 s/c=1.44 id=60% cov=98% --KYFAKYLTSAPIMATVALVSLSVVLIELNHFFPGLQYGTYF # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 0 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 R 3 * * * * * * * * 1000 * * * * * 1000 * * * * * 3 0 * * * * * * 1311 0 0 Y 4 * * * * * * * * * * * * * * * * * * * 0 4 0 * * * * * * 1311 0 0 L 5 * * * * 1000 * * * * 1000 * * * * * * * * * * 5 0 * * * * * * 1311 0 0 F 6 1000 * * * 1000 * * * * * * * * * * * * * * * 6 0 * * * * * * 1311 0 0 R 7 * * * * * * * * 1000 * * * * * 1000 * * * * * 7 0 * * * * * * 1311 0 0 Y 8 * * * * * * * * * * * * * * * * * * * 0 8 0 * * * * * * 1311 0 0 L 9 * * * * * * * * * 0 * * * * * * * * * * 9 0 * * * * * * 1311 0 0 S 10 * * * * * * * * * * * * * * * 1000 1000 * * * 10 0 * * * * * * 1311 0 0 S 11 * * * * * * * * * * * * * * * 0 * * * * 11 0 * * * * * * 1311 0 0 A 12 0 * * * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1311 0 0 P 13 * * * * * * * * * * * * 0 * * * * * * * 13 0 * * * * * * 1311 0 0 V 14 * * * * * * * 1000 * * * * * * * * * 1000 * * 14 0 * * * * * * 1311 0 0 V 15 * * * * * * * * * * 1000 * * * * * * 1000 * * 15 0 * * * * * * 1311 0 0 A 16 0 * * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1311 0 0 T 17 * * * * * * * * * * * * * * * * 0 * * * 17 0 * * * * * * 1311 0 0 L 18 * * * * * * * * * 1000 * * * * * * * 1000 * * 18 0 * * * * * * 1311 0 0 A 19 0 * * * * * * * * * * * * * * * * * * * 19 0 * * * * * * 1311 0 0 L 20 * * * * * * * * * 0 * * * * * * * * * * 20 0 * * * * * * 1311 0 0 I 21 * * * * * * * 1000 * * * * * * * * * 1000 * * 21 0 * * * * * * 1311 0 0 I 22 * * * * * * * 1000 * * * * * * * 1000 * * * * 22 0 * * * * * * 1311 0 0 I 23 * * * * * * * 1000 * 1000 * * * * * * * * * * 23 0 * * * * * * 1311 0 0 S 24 * * * * * * * * * * * * * * * 0 * * * * 24 0 * * * * * * 1311 0 0 V 25 * * * * * * * * * * * * * * * * * 0 * * 25 0 * * * * * * 1311 0 0 I 26 * * * * * * * 1000 * * * * * * * * * 1000 * * 26 0 * * * * * * 1311 0 0 L 27 * * * * * * * * * 0 * * * * * * * * * * 27 0 * * * * * * 1311 0 0 I 28 * * * * * * * 0 * * * * * * * * * * * * 28 0 * * * * * * 1311 0 0 V 29 * * * 1000 * * * * * * * * * * * * * 1000 * * 29 0 * * * * * * 1311 0 0 L 30 * * * * * * * * * 0 * * * * * * * * * * 30 0 * * * * * * 1311 0 0 N 31 * * * * * * * * * * * 0 * * * * * * * * 31 0 * * * * * * 1311 0 0 Y 32 * * * * * * 1000 * * * * * * * * * * * * 1000 32 0 * * * * * * 1311 0 0 L 33 * * * * 1000 * * * * 1000 * * * * * * * * * * 33 0 * * * * * * 1311 0 0 F 34 * * * * 0 * * * * * * * * * * * * * * * 34 0 * * * * * * 1311 0 0 P 35 * * * * * * * * * * * * 0 * * * * * * * 35 0 * * * * * * 1311 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 1311 0 0 L 37 * * * * * * * * * 0 * * * * * * * * * * 37 0 * * * * * * 1311 0 0 Q 38 * * * * * * * * * * * * * 0 * * * * * * 38 0 * * * * * * 1311 0 0 Y 39 * * * * * * * * * * * * * * * * * * * 0 39 0 * * * * * * 1311 0 0 G 40 * * * * * 0 * * * * * * * * * * * * * * 40 0 * * * * * * 1311 0 0 T 41 * * * * * * * * * * * * * * * * 0 * * * 41 0 * * * * * * 1311 0 0 F 42 * * * * 1000 * * * * * * * * * * * * * * 1000 42 0 * * * * * * 1311 0 0 F 43 * * * * 0 * * * * * * * * * * * * * * * 43 0 * * 0 * * * 1311 0 0 //