HHsearch 1.5 NAME c6ivuB_ FAM FILE c6ivuB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6ivuB_.a3m DATE Sat May 18 08:24:56 2019 LENG 118 match states, 118 columns in multiple alignment FILT 52 out of 56 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.3981 -1.0507 SEQ >ss_dssp CCCCCCHHHHHHHHHHHHHHTCCHHHHHHTCCSSHHHHHHHHHHHHHHHHCHHHHHHHHHHSSCCHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHSSCHH HHHHHHHHHGGGSSCCCC >sa_dssp EEDEBCEECDCDACEDADEBDADCECBEECDBEDECCDACABDAACCAADCEEACDCACEECDBBEEDADEDBEBEDECACECDCBAAABAABADCEAEC CCEECDDCBEECEECEEE >ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHH HHHHHHHHHHHHHHHHCC >ss_conf 9714799999999999998298399996208889899999999999995599999999982265199999982998999975169999999999288489 999953897644664159 >Consensus xexxexreEIxxfxkxLxxfgIslxdLvxxsPKHxDtRxxxixiAxxixxxxxlxxxlxxkKxLPikeLxxxxxVxrKtleRxRkYIIAxxlIlxxdyxx LkxYlxxxxxxxxxxxxx >c6ivuB_ MEDIEAREDIEELKKKLQEFGITFLDLVLNVPKHRDSRQLCIRLAKMLAEDEQMYNALMKNKNIPRNELKKKAKVHGRTIGNNRKYIIALCLIFRSNLNL SKRYLEYYTMLEHHHHHH >UniRef50_C1I9M2(23-128:331) Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I9M2_9CLOT E=7e-18 s/c=0.86 id=30% cov=89% -DAIEKRaEEIESLKEELLTYKILIKDLAHEYPSYS-IRNKILNIAYFIIEDVELFDYLSETKKFPINRLLKRTPVEREFLQAWREYIVAYVVIFSNpNY KYLQEYIQ------------ >UniRef50_C5RQ09(115-216:224) Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQ09_CLOCL E=8e-07 s/c=0.54 id=23% cov=84% --------EIALFQEELKNYKISFAAFSSGAPQNTEDKNLSLNLAFYCIRNTSAQNHIQSKHSLPINHLAKNFHIPASKIRSLKKYILALFLLFSiDDYF YLRAYLD------------ >UniRef50_B0K7I6(105-210:218) RNA polymerase, sigma 28 subunit, FliA/WhiG family n=10 Tax=Thermoanaerobacteraceae RepID=B0K7I6_THEP3 E=3e-26 s/c=1.12 id=33% cov=91% YEAENRKLEMISFVNLLSLYNITLDDLVKQSPKHSDTRKIATKIAYTICKNEKLLEYLKNRKNLPIKDLISILKVSRKTIEKHRKYIIALVIIISEDLPL LKQYIS------------ >UniRef50_B8FZ04(123-228:237) RNA polymerase, sigma 28 subunit, SigI n=2 Tax=Desulfitobacterium hafniense RepID=B8FZ04_DESHD E=1e-24 s/c=1.08 id=30% cov=89% -QNQERAAEIQEFSLALKKYGLSFKVLAEVCPKHRDSRETLLGVARTLALSPELWQQVEKTGKLPMQALTLKTKVHPKVLERGRKYILAVALLIANqhDY IYLREYV------------- >UniRef50_UPI0001C3646B(121-227:239) putative RNA polymerase sigma factor SigI n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3646B E=2e-23 s/c=1.02 id=20% cov=92% -ERLSLCEEIDRLSEAIGVYGVAWKDLPRICPKQPRAKATCRQAAAAVLLNPEFHAMFFGQKKLPQAQLASALFLSPKTLEKHRKYIVTLIILLSGDYPG IRAFLPQY---------- >UniRef50_B0A685(130-232:234) Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A685_9CLOT E=2e-21 s/c=1.00 id=23% cov=86% ----DLRDEILAFKKELEQFDITFEILAEKSPKHKDTRDRAIRIGYRVSDDGVIIEKVYEKKRLPIRDISRKFEITEKILKRSKVFILSTAVLFFKKYTN LIVWI------------- >UniRef50_UPI0001C379BF(122-230:240) putative RNA polymerase sigma factor SigI n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C379BF E=3e-23 s/c=1.00 id=24% cov=90% YEEKELREatkqEIEELSAQMEDFGVSMNDVADNSPRQRRTLEVCQKAISYARNNPDILEDFLRTKRVPIARLAEGAEVERKSLERHRRYLVAVLLICTN GYEIMRGHI------------- >UniRef50_C6PTR9(114-219:228) Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTR9_9CLOT E=6e-20 s/c=0.93 id=25% cov=90% -ENLKRSEEIKVLSEELKRYNVSFKDLVNNSPSHKDTRDKLLDVSFACSKDSSILNYIHKYKKLPVKQICITIGCNRKFIEQWRRYILSLIIIISNEsYY YITSYLN------------ >UniRef50_Q0TMY6(22-127:337) Putative uncharacterized protein n=9 Tax=Clostridium perfringens RepID=Q0TMY6_CLOP1 E=4e-14 s/c=0.75 id=18% cov=86% -----LKKEISTFIKELRKFKVDLKSLSSEE-FNLEERNLILNIAYFLVDEEVLLRKIINRRELKTKVIAKKTGFSNEKIISWSNYLIAYLILLYNaDYT NLAMYLN------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * 2095 * * 1953 * 2892 3910 * * * * * * * * 1706 1 0 * * * * * * 3466 0 0 E 2 * * 2344 641 * * * * * * * 3221 * 4195 * * * * * * 2 0 * * * * * * 3972 0 0 D 3 3541 * 2469 2354 * * * * 4921 * * 1732 * 3898 3457 4453 * * * * 3 0 * * * * * * 4222 0 0 I 4 * * 4818 3877 3760 * * 1974 3905 2487 4558 * * 4624 * 4588 * 3222 * 3452 4 0 * * * * * * 4222 0 0 E 5 * * 2283 754 * * * 5176 4972 * * 3592 * 5661 * 4671 * * * * 5 0 * * * * * * 4469 0 0 A 6 4404 * * * 4603 * * 5733 5145 2003 5583 * * * 1231 5899 3671 3774 * * 6 0 * * * * * * 4751 0 0 R 7 5747 5052 * 5899 * * * 4161 2134 * 5509 4344 * 3888 1311 3866 5961 5363 * * 7 41 5145 * 0 * * * 4751 1000 0 E 8 4068 5356 3560 1193 * 5666 * * 2989 2897 * 5866 * 3672 5773 * * * * * 8 46 4994 * 2000 415 * * 4800 1000 0 D 9 * * 4711 206 * * * * * * * * * 4257 * * 5510 5604 * * 9 0 * * * * * * 4877 0 0 I 10 * * * * * * * 400 * 3003 4058 * * * * * * 4117 * * 10 0 * * * * * * 4877 0 0 E 11 3949 * 4067 1578 * 5510 5391 4856 4003 2527 * 4943 * 5886 4150 3571 5668 6075 * * 11 0 * * * * * * 4877 0 0 E 12 4604 * 5423 2205 5389 * 4184 * 4408 2788 * 4502 * 3166 3501 3302 4228 5569 * 5151 12 0 * * * * * * 4877 0 0 L 13 * 5298 * * 1084 * * * * 1827 * * * * * * * * * 2179 13 0 * * * * * * 4877 0 0 K 14 3445 * * 2810 * * * 3302 2297 5298 * 4848 * 2638 4804 2855 5077 4783 * * 14 0 * * * * * * 4877 0 0 K 15 4034 * * 2581 * * * 5510 1310 4073 6569 3445 * 4945 3873 5106 4918 * * 5519 15 0 * * * * * * 4877 0 0 K 16 4516 * * 1396 * * * 6569 2734 3631 4808 4356 * 4118 3633 4907 * 3665 * * 16 0 * * * * * * 4877 0 0 L 17 * * * * * * * 3131 * 255 4387 * * * * * * * * * 17 0 * * * * * * 4850 0 0 Q 18 3174 5506 * 2748 * 4515 * * 2431 3783 3815 5794 * 3730 3740 2674 * * 5602 * 18 0 * * * * * * 4850 0 0 E 19 4538 * 3656 1576 5420 6061 * * 3354 4715 * 3854 * 3240 4606 3320 5287 5260 * * 19 0 * * * * * * 4850 0 0 F 20 * * * * 1057 * * * * * * * * * * * * * 4600 1065 20 0 * * * * * * 4850 0 0 G 21 * * 3678 * * 722 * * 2372 * * 3273 * 5710 * * * * * * 21 0 * * * * * * 4850 0 0 I 22 * * * * 4560 * * 832 * 2431 5506 * * * * * * 2407 * * 22 0 * * * * * * 4850 0 0 T 23 5260 5794 4804 5457 * 5482 * * 4766 3679 * 5402 * * 5113 1314 1712 * * * 23 0 * * * * * * 4850 0 0 F 24 * * * * 1238 * * 3425 * 1278 5056 * * * * * * 6089 5271 * 24 0 * * * * * * 4848 0 0 L 25 3802 * 3205 2079 5770 * 4953 * 2087 5707 5724 4249 * 6585 5942 3108 5803 5465 * 5422 25 0 * * * * * * 4848 0 0 D 26 4861 * 832 2463 * * 5954 5593 5436 * * 3413 * * * 4812 5860 5975 * * 26 0 * * * * * * 4848 0 0 L 27 * * * * 4861 * * 4593 * 230 * * * * * * * 3808 * * 27 0 * * * * * * 4848 0 0 V 28 2089 * * 5595 * 5422 * 3225 * 5314 * * 4368 * * 3836 * 1088 * * 28 0 * * * * * * 4848 0 0 L 29 5637 * 2689 2409 * 4948 5301 * 2438 4890 6075 2675 * 4529 3997 3588 * * * * 29 0 * * * * * * 4848 0 0 N 30 3245 3399 * 2333 5215 4861 6585 3976 5593 5942 * 2446 * 5292 * 3280 * 3853 * 4387 30 0 * * * * * * 4848 0 0 V 31 2587 3461 * 4812 * * * 5422 * 6430 5473 * 4260 * * 977 5032 4894 * 5301 31 52 * 4812 * * * * 4848 0 0 P 32 * * * * * * * 5130 * * * * 42 * * * * * * * 32 0 * * * * 0 * 4774 0 1000 K 33 * * * * 4812 * * * 418 * * * * 4301 3068 4436 * * * * 33 37 * 5307 * * * * 4848 0 0 H 34 * * * 5076 * * 435 * * * * 3793 * 2931 * * * * * 5179 34 0 * * * * 0 * 4815 0 1000 R 35 4447 * * 2851 5762 * * * 2055 4812 * 5861 5271 4630 1706 4670 3666 6266 * * 35 37 * 5301 * * * * 4848 0 0 D 36 5638 * 543 3786 * * * * 3443 * * 5572 * * 3209 * * * * * 36 42 * 5138 * * 0 * 4829 0 1000 S 37 2802 * 4802 4745 * * * 5215 * 5436 * * * 5151 5569 1762 1360 * * * 37 0 * * * * 0 * 4821 0 1000 R 38 * * * * * * * 4467 2259 4036 * * * * 546 * * * * * 38 0 * * * * * * 4848 0 0 Q 39 4496 * 3371 1895 * * * 4467 2819 3871 * 2760 * 3343 4344 5954 5416 * * * 39 0 * * * * * * 4848 0 0 L 40 4516 * * 5637 5416 * 6122 3566 3235 2062 3630 3563 * * 3669 4194 2841 5056 * * 40 0 * * * * * * 4848 0 0 C 41 1619 2288 * * 6264 * * 3536 * 2066 * * * 6288 * 4112 5637 * * 4610 41 0 * * * * * * 4848 0 0 I 42 * * * * 6585 * 5016 1267 5465 1684 4649 * * 4352 4443 5770 6166 5595 * 5543 42 0 * * * * * * 4848 0 0 R 43 4362 * 3921 4835 * 3834 * * 2149 5942 4729 1791 * 3560 3591 4506 * * * * 43 0 * * * * * * 4848 0 0 L 44 2462 5942 * * * * * 1144 * 3134 * * * * * * 5762 2200 * * 44 0 * * * * * * 4848 0 0 A 45 369 * * * * 5593 * 4369 * 5016 * * * * * 3167 * 6122 * * 45 0 * * * * * * 4848 0 0 K 46 5271 * * 3323 4178 * 5942 * 2222 3862 6384 3989 * 3614 2434 5056 * * * 2758 46 0 * * * * * * 4848 0 0 M 47 2695 * * 3955 3657 5861 * 3620 3302 3690 4427 * * 4680 4713 * 3659 3515 * 2898 47 0 * * * * * * 4848 0 0 L 48 3572 3769 * * * * * 1650 * 1656 * * * * * 5499 * 2437 * * 48 0 * * * * * * 4848 0 0 A 49 1709 4090 * * * 5436 * 2785 * 3525 * * * * 4036 2706 * 2754 5803 * 49 0 * * * * * * 4848 0 0 E 50 5163 * 3179 1406 * 5724 3962 * 3133 4581 * 4306 * 5637 4861 2833 * * * * 50 0 * * * * * * 4848 0 0 D 51 * * 1655 3243 * * 3839 * * * * 1490 * 5860 4339 5975 3869 * * * 51 0 * * * * * * 4848 0 0 E 52 * * 3589 1602 * 5021 * * 3015 * * 5762 2183 4504 5724 4499 4014 5301 * * 52 0 * * * * * * 4848 0 0 Q 53 4588 * 2829 1583 * 4504 * * 5120 5938 * 3453 * 4700 * 2891 4308 4150 * 5422 53 0 * * * * * * 4848 0 0 M 54 4861 * * * 3993 * * 2125 * 848 4378 * * * * * * 5416 5015 6004 54 0 * * * * * * 4848 0 0 Y 55 5324 5835 * * 2540 * 5271 5593 5637 1810 3670 * * 4861 3745 4948 4457 3743 5975 3689 55 0 * * * * * * 4848 0 0 N 56 3314 * 2503 2088 * 4419 5762 * 4756 * * 3126 * 3508 3406 4213 5416 6430 * * 56 0 * * * * * * 4848 0 0 A 57 5707 * 3990 4193 3938 5186 4399 4684 2189 5261 3928 * * 3649 5016 5307 * * * 2076 57 0 * * * * * * 4848 0 0 L 58 * * * * 2965 * * 2673 * 954 3643 * * * * * 5436 3386 * * 58 0 * * * * * * 4848 0 0 M 59 * 5860 * 3743 3757 * 5586 3138 2961 3127 4959 4356 * 3817 4439 5301 4948 4458 * 2685 59 0 * * * * * * 4848 0 0 K 60 5803 * * 2663 * 5271 * * 2002 4825 5499 3554 * 5770 1921 4121 4402 5724 * * 60 0 * * * * * * 4848 0 0 N 61 * * * * * * * * 1057 * * 3328 * 5271 3095 5016 2458 5465 * 4597 61 0 * * * * * * 4848 0 0 K 62 * * * * * 3942 4861 * 542 * * 5692 * * 2363 * * * * * 62 0 * * * * * * 4848 0 0 N 63 4251 6063 * 3751 * * * * 2069 * 5610 3893 * 3968 1964 3756 4193 5207 * 4155 63 0 * * * * * * 4843 0 0 I 64 * * * * 5294 * * 2631 * 354 * * * * * * * 5029 * * 64 0 * * * * * * 4843 0 0 P 65 * * * * * * * * 4810 * * * 87 5465 * * * * * * 65 0 * * * * * * 4843 0 0 R 66 * * * * 5835 * * 1779 5943 1897 3273 * * 5260 5698 * 3909 2564 * 5504 66 0 * * * * * * 4843 0 0 N 67 2793 * * * * 5852 * * 999 6238 5755 3435 * 4430 3540 4392 4888 * * * 67 0 * * * * * * 4843 0 0 E 68 4944 * 4248 1379 * 6098 4349 * 3800 5835 * 4383 * 2664 3335 4763 * 4810 * * 68 0 * * * * * * 4843 0 0 L 69 * * * * * * * 1824 * 687 4572 * * * * * * 4197 * * 69 0 * * * * * * 4843 0 0 K 70 2409 3955 * 2447 * * * 3749 4646 3069 4303 * * * * 2767 3484 4527 * * 70 0 * * * * * * 4843 0 0 K 71 4982 * 5471 2793 * 6063 * 5581 1563 2456 * * 6107 5018 3889 3364 6404 5430 * * 71 0 * * * * * * 4843 0 0 K 72 4102 * 5977 4129 5595 5029 * 3957 2640 2335 4162 3735 * 5835 2771 5115 5581 4331 * * 72 0 * * * * * * 4843 0 0 A 73 3169 5670 * * 2867 5610 * 3013 * 2757 * * * * * 4428 2133 2817 * 5413 73 0 * * * * * * 4843 0 0 K 74 * * 3269 3260 5260 2052 4855 * 2626 * * 4179 4474 4587 3669 4514 * 4608 * 5451 74 0 * * * * * * 4843 0 0 V 75 * 5581 * * 4155 * * 2072 * 3270 * 5558 * * * 5778 5926 928 * * 75 0 * * * * * * 4843 0 0 H 76 4982 5504 * 4155 * * 3008 * 3253 * * 2779 3912 * * 1538 3257 * * * 76 0 * * * * * * 4843 0 0 G 77 4855 * * 2886 * 5698 6081 * 3381 * * 4810 3603 5850 895 5207 * * * * 77 0 * * * * * * 4843 0 0 R 78 * * * 3138 * * * * 490 * * * * * 2841 4855 * * * * 78 0 * * * * * * 4843 0 0 T 79 * * * * 3801 * * 3290 3425 5778 * * * * * 5029 827 3053 * * 79 0 * * * * * * 4843 0 0 I 80 * * * * * * * 1217 * 1016 * * * * * * * 3731 * * 80 0 * * * * * * 4843 0 0 G 81 * * 5595 665 * 5698 * 4810 3204 * * 5207 * 3729 3600 * * * * * 81 0 * * * * * * 4843 0 0 N 82 5294 * * * * 5595 * * 2795 * * 4738 * 5581 609 3832 5300 * * * 82 0 * * * * * * 4843 0 0 N 83 4627 * * * * 2733 2727 * * 4020 * 1923 * 3939 * 3265 * * 2993 4725 83 0 * * * * * * 4843 0 0 R 84 * * * * * * * * 2450 * * * * * 356 4810 * * * * 84 0 * * * * * * 4843 0 0 K 85 5465 * 5207 4297 * * * 5451 723 4442 * 4810 * * 3366 4189 5943 5585 * * 85 0 * * * * * * 4843 0 0 Y 86 * * * * 1777 * * * * * * * * * * * * * * 498 86 0 * * * * * * 4843 0 0 I 87 * * * * * * * 302 * 2667 4982 * * * * * * * * * 87 0 * * * * * * 4843 0 0 I 88 * * * * * * * 654 * 2382 4982 * * * * * 5504 3070 * * 88 0 * * * * * * 4843 0 0 A 89 480 5465 * * 5300 4618 * * * * * * * * * 3556 3892 4581 * * 89 0 * * * * * * 4843 0 0 L 90 3748 * * * * * * 3866 * 2108 3643 * * * * 5610 3927 1535 * 3138 90 0 * * * * * * 4843 0 0 C 91 2331 3387 * * 4346 * * 2774 * 3090 5430 * * * * 2927 5558 2680 * 4036 91 0 * * * * * * 4843 0 0 L 92 * * * * * * * 1345 * 1090 5558 * * * * * * 3113 * * 92 0 * * * * * * 4843 0 0 I 93 4198 * * * * * * 553 * 2247 5926 * * * * * * 4755 * * 93 0 * * * * * * 4843 0 0 F 94 * 5029 * 5451 1690 * * 2680 * 1357 * * * 5523 * * * * * 3868 94 64 4524 * 1000 1000 * * 4843 1682 0 R 95 3539 * 4558 5824 3903 4413 * 5451 4455 6237 4951 4868 * * 3023 1926 3057 5680 5850 4361 95 92 4011 * 523 1717 * * 4843 1871 0 S 96 * * 3789 3301 * 2302 * * 3497 * * 1758 * * 5454 2376 5397 * * * 96 277 2516 * 150 3338 * * 4831 2985 0 N 97 * * 1160 3022 * 3303 * * 3722 * * 2468 * * 4269 * 5660 * * * 97 64 4518 * 0 * * * 4831 1522 0 L 98 * * * * 2037 * * * * 2004 * * * * * * * * * 980 98 0 * * * * * * 4831 0 0 N 99 * * 4339 2574 4828 5452 * 4158 3643 5393 * 4759 2530 * 3838 3677 3129 4177 * 4757 99 0 * * * * * * 4831 0 0 L 100 4526 5737 6061 6051 4418 4489 4782 3404 * 3075 5903 2758 * * * 5413 5783 4173 * 1712 100 0 * * * * * * 4831 0 0 S 101 * * * * 4783 * * 1890 * 785 4274 * * * * 4499 * 5832 * * 101 0 * * * * * * 4831 0 0 K 102 4232 * * * 6012 * * 4479 1550 4707 * 5737 * 2718 1962 4520 5506 * * 6211 102 0 * * * * * * 4831 0 0 R 103 3649 * 2620 2112 * 3156 * * 5482 4423 4772 5624 5588 5084 4694 2878 * 5570 5737 5413 103 0 * * * * * * 4831 0 0 Y 104 * * * * 3053 * 3954 * * * * * * * * * * * 3130 513 104 0 * * * * * * 4806 0 0 L 105 * * * * * * * 1425 * 1113 * * * * * * 5373 2826 * * 105 0 * * * * * * 4820 0 0 E 106 * * 2667 3383 * 4471 * * * * * 1317 3866 2383 * 4645 * * * * 106 0 * * * * * * 4166 0 0 Y 107 * * 2584 * * 2804 * * * * * * * 2238 * * * * 1611 2731 107 0 * * * * * * 2862 0 0 Y 108 * * * * 1127 * * * * * * * * * * * * * * 883 108 0 * * * * * * 2410 0 0 T 109 * * * 1000 * * * * * * * * * * * * 1000 * * * 109 0 * * * * * * 1480 0 0 M 110 * * * * * * * * * * 1000 * * * 1000 * * * * * 110 0 * * * * * * 1480 0 0 L 111 * * * 1000 * * * * * 1000 * * * * * * * * * * 111 0 * * * * * * 1480 0 0 E 112 * * * 1000 * 1000 * * * * * * * * * * * * * * 112 0 * * * * * * 1480 0 0 H 113 * * * * * * 1000 * 1000 * * * * * * * * * * * 113 0 * * * * * * 1480 0 0 H 114 * * * * * * 1000 * * * * * * * * * * * * 1000 114 0 * * * * * * 1480 0 0 H 115 * * * * * * 0 * * * * * * * * * * * * * 115 0 * * * * * * 1480 0 0 H 116 * * * * * * 0 * * * * * * * * * * * * * 116 0 * * * * * * 1000 0 0 H 117 * * * * * * 0 * * * * * * * * * * * * * 117 0 * * * * * * 1000 0 0 H 118 * * * * * * 0 * * * * * * * * * * * * * 118 0 * * 0 * * * 1000 0 0 //