HHsearch 1.5 NAME c6gwkX_ FAM FILE c6gwkX_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6gwkX_.a3m DATE Sat May 25 08:20:22 2019 LENG 67 match states, 67 columns in multiple alignment FILT 43 out of 47 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4528 1.7766 SEQ >ss_dssp CHHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEEETTEEEEEEGGGEEEEEESSCCCCC >sa_dssp EEDDDCBDCADEECBDACADBEEDDDCDBCADECDEEBBCBBEEECEEEBDCECCDDCECECEDDCE >ss_pred CCHHHHHHHHHHCCCEEEEEEECCEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEEEECCCEEECC >ss_conf 9157899999744983999993471898899873447999972893158997444466027704329 >Consensus nlQdxfLnxxrkxxxxVtixLvnGxklxGxIxxfDxfxVllxxxgxqqLVYKHAISTIxPxxxxxlx >c6gwkX_ NLQDTFLNSVRKSKTPLTIFLVNGVKLQGVVSWFDNFCVLLRRDGQSQLVYKHAISTIMPAQPVQLY >UniRef50_B6IY17(7-73:117) Host factor protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IY17_RHOCS E=2e-15 s/c=1.24 id=40% cov=100% -LQSKVLDVLRTGGTEVTVFLVTGVRLVGRIVAHDAYSLALTGHGGGlQLIYKHAVTTLVPSSPLSLY >UniRef50_Q140R2(7-65:186) Conserved nucleoprotein, Hfg, host factor I like protein n=4 Tax=Burkholderia RepID=Q140R2_BURXL E=6e-16 s/c=1.44 id=42% cov=88% HPQNDFMNAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTI--------- >UniRef50_Q5HPN7(6-64:79) Host factor-I protein, putative n=64 Tax=Staphylococcus RepID=Q5HPN7_STAEQ E=1e-13 s/c=1.31 id=43% cov=90% NIQDQALENFKSEKTEVTIFFLNGFQMKGVVENYDKYVVSLNSQGKQHLIYKHAISTFT-------- >UniRef50_B7JTR0(20-75:77) RNA chaperone Hfq n=19 Tax=Bacillus cereus group RepID=B7JTR0_BACC0 E=3e-10 s/c=1.19 id=35% cov=85% --QEYLLQEAFQKRKNIMLILLKGLHIKGIIRGYDIFSILIEYEGKQQLVYKHAISTI--------- >UniRef50_B7IZ69(6-75:83) Host factor Hfq n=4 Tax=Bacillus cereus group RepID=B7IZ69_BACC2 E=2e-07 s/c=0.81 id=34% cov=87% -VQNKVIENVKGKNSKVNFILNNGFRIEGKIVAYDDFCILVSTKApsnekqigdkqvfQNQLIYKHNISTI--------- >UniRef50_C8W3I4(20-83:85) RNA chaperone Hfq n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3I4_DESAS E=7e-12 s/c=1.12 id=35% cov=93% -VQNKILVQLKEQQASIIVYLINGYRLGGKLKDFDTFTVILEEKETQYIVYKHAISTIIPEK----- >UniRef50_Q73AM9(19-77:78) Host factor-I protein n=136 Tax=Bacillus RepID=Q73AM9_BACC1 E=2e-11 s/c=1.20 id=43% cov=90% HLQEELYKQIKEEKGIVTIFLKSGVRIVGEVVAIDKFTVLMLVDGKQQLIYKQAVSTIM-------- >UniRef50_Q0JYN3(16-72:108) Putative uncharacterized protein h16_B2359 n=2 Tax=Cupriavidus RepID=Q0JYN3_RALEH E=9e-07 s/c=0.96 id=38% cov=82% -LQHQQFAAYRTSQAPVIVHLATGARLQGLVLASDDYVVLLGRQPddiRPTVVYKRAI------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * 2049 * * * * 399 * * * * * * * * 1 0 * * * * * * 2885 0 0 L 2 * * * * * 4930 * 2064 * 962 4601 * 4727 * * * 4756 3342 * * 2 0 * * * * * * 3459 0 0 Q 3 * * * * * * * * * * * * * 0 * * * * * * 3 0 * * * * * * 3482 0 0 D 4 * * 784 2220 * * 4362 * * * * 3108 * * * 4649 * * * * 4 0 * * * * * * 3482 0 0 T 5 6013 * 3149 5009 * 5391 6211 4145 2491 4307 * * 3737 2551 4715 3162 4464 4815 * 4565 5 0 * * * * * * 3482 0 0 F 6 3886 * * * 906 * * 3839 * 3459 4656 * * 4362 * * * 3631 * 3858 6 0 * * * * * * 3482 0 0 L 7 * * * * 4362 * * 4612 * 383 4743 * * * * * * * * 3232 7 0 * * * * * * 3482 0 0 N 8 4362 * 4649 3206 * * * * 3822 * * 697 * 4565 * * 4806 4726 * * 8 0 * * * * * * 3482 0 0 S 9 2478 * 4962 3059 * * 4351 * 4806 5391 5809 3107 * 2307 5620 6121 3093 4649 4956 * 9 27 * 5759 * * * * 3482 0 0 V 10 2104 * * * 4807 * * 4073 * 1282 * * * * * * * 2239 * 4348 10 0 * * * * * 0 3472 0 1000 R 11 * * * * 4551 * * 3711 2479 * * * * * 511 * * * * * 11 0 * * * * * 0 3472 0 1000 K 12 * * 4639 2853 * 4595 * * 1005 * * * * 4551 4207 4147 3211 5612 * * 12 0 * * * * * 0 3472 0 1000 S 13 4821 * 3876 1313 * 4126 * * 2528 * * 4260 * 4304 * 2640 * * * * 13 0 * * * * * 0 3522 0 1000 K 14 * * * * * 3554 5903 * 1458 * * 2947 * 3642 1693 6045 * * * * 14 0 * * * * * 0 3522 0 1000 T 15 3642 * * * * 5022 * 2041 3347 * * 4838 * * 3742 3165 2748 2492 * * 15 0 * * * * * 0 3522 0 1000 P 16 4838 * 5827 2798 * * * 5022 4042 4821 * 3767 1685 4427 3329 3941 4068 5542 * * 16 0 * * * * * 0 3522 0 1000 L 17 5396 5262 * * * * * 2695 * 3622 * * * * * * * 485 * * 17 0 * * * * * 0 3522 0 1000 T 18 4416 * 5262 4796 * * * 2700 4722 * 4572 3680 * * * 3304 1229 4277 * * 18 0 * * * * * 0 3522 0 1000 I 19 * * * * 4623 * * 967 * 4572 * * * * * 4688 * 1447 * * 19 0 * * * * * 0 3522 0 1000 F 20 * * * * 1290 * 3399 3085 * * * * * * * * * * * 1402 20 0 * * * * * 0 3519 0 1000 L 21 * * * * 4837 * * * * 108 4744 * * * * * * * * * 21 0 * * * * * 0 3519 0 1000 V 22 4521 * * * * * * 3013 3840 2542 4093 4628 * * * 4844 5003 1231 * * 22 0 * * * * * 0 3519 0 1000 N 23 * * * * * * * * 4317 * * 639 * * 5003 2368 3594 * * * 23 0 * * * * * 0 3519 0 1000 G 24 * * * * * 0 * * * * * * * * * * * * * * 24 0 * * * * * 0 3519 0 1000 V 25 4521 * * 4744 2256 * * 2756 * 4641 * 5003 * * * * 4844 1390 * 3754 25 0 * * * * * 0 3519 0 1000 K 26 * * * * * * 4641 * 1593 4671 * * 5838 2155 1526 * * * * * 26 0 * * * * * 0 3519 0 1000 L 27 * * * * * * * 2181 * 730 3918 * * * * * 4736 3776 * * 27 0 * * * * * 0 3519 0 1000 Q 28 * * 4744 3346 * 4785 * * 2097 * 5639 * 4831 2402 2985 5555 3304 3307 * * 28 0 * * * * 0 * 3519 0 1000 G 29 * * * * * 0 * * * * * * * * * * * * * * 29 0 * * * * * * 3529 0 0 V 30 * 4812 * 5061 4141 * * 3114 2286 3767 6066 * * 3461 2928 4229 4988 3007 * 4741 30 0 * * * * * * 3529 0 0 V 31 * * * * * * * 869 * 3770 * * * * * * * 1399 * * 31 0 * * * * * * 3529 0 0 S 32 5801 * 6144 2755 * * * 3796 2363 2763 * * * * 2588 4478 4331 2994 5663 * 32 0 * * * * * * 3529 0 0 W 33 1986 * 3901 * * 1956 * * * * * 4850 * * * 1675 * * 4332 5293 33 0 * * * * * * 3529 0 0 F 34 * * * * 655 * 4701 5061 * * * * * 5015 * 3688 4687 4848 * 3129 34 0 * * * * * * 3529 0 0 D 35 * * 0 * * * * * * * * * * * * * * * * * 35 0 * * * * * * 3529 0 0 N 36 4234 * 3589 * * * * 4656 2276 4774 * 1693 * 2792 * 3454 4794 * * * 36 0 * * * * * * 3529 0 0 F 37 * * * * 722 * * * * * * * * * * * * * * 1344 37 0 * * * * * * 3529 0 0 C 38 * 2757 * * * * * 5854 * 4812 4860 * * * * 2282 1405 2462 * * 38 0 * * * * * * 3529 0 0 V 39 * * * * * * * 2202 * 3152 5801 * * * * * * 617 * * 39 0 * * * * * * 3529 0 0 L 40 4016 * * * 4687 * * 3113 * 629 4812 * * * * 4850 * 3906 * * 40 0 * * * * * * 3529 0 0 L 41 * * * * * * * 2800 * 652 3498 * * * * * 4746 3409 * * 41 51 4860 * 1585 585 * * 3529 1000 0 R 42 4860 * 5959 1490 * 4535 * * 3482 5061 4687 4850 * 5801 2666 3159 3838 * * * 42 141 4287 4578 0 * * * 3529 1397 0 R 43 4942 5625 5638 3340 4720 4092 * * * * * 4185 * 5517 2937 2353 2768 2821 * 4633 43 0 * * * * 0 * 3535 0 1273 D 44 * * 2097 2374 * 3969 3256 * 3146 * 5959 3421 4812 2936 * * 5943 * * * 44 44 5961 6144 0 * * * 3529 1000 0 G 45 4639 * * 4788 * 969 * * 5728 * * 2993 3269 4826 * 3939 5136 4801 * * 45 126 3582 * 2940 201 0 * 3534 1690 1000 Q 46 5664 * 4758 * * 3252 4649 6087 1792 * 5801 4988 * 2679 2632 * 3827 4119 * * 46 54 * 4758 * * * * 3529 0 0 S 47 5610 * * 4655 * 4684 * * * 4779 * 4140 3661 921 * 3340 3681 5389 * * 47 57 4684 * 0 * 0 * 3494 1000 1000 Q 48 * * * * * * 4850 * * 4758 * 3935 * 545 * 5664 3378 5293 * 4794 48 25 5854 * 0 * * * 3529 1000 0 L 49 * * * * 4848 4812 * 4794 * 464 2996 * * * * * * 4535 * * 49 0 * * * * * * 3529 0 0 V 50 * * * * * * * 1153 * 4758 * * * * * * * 962 * * 50 0 * * * * * * 3529 0 0 Y 51 * * * * 3382 * * * * * * * * * * * * * * 145 51 0 * * * * * * 3529 0 0 K 52 * * * * * * * * 0 * * * * * * * * * * * 52 0 * * * * * * 3529 0 0 H 53 4988 * * * * * 416 * * * * 4746 * 3862 3143 * * * * * 53 0 * * * * * * 3529 0 0 A 54 166 * * * * * * * 4988 * * 4644 * * * * 4746 * * * 54 0 * * * * * * 3529 0 0 I 55 * * * * * * * 354 * 4007 * * * * * * * 2684 * * 55 0 * * * * * * 3529 0 0 S 56 * * * * * * * * * * * * * * * 197 2973 * * * 56 0 * * * * * * 3494 0 0 T 57 * * * * * * * * * * * * * * * 4174 144 4669 * * 57 0 * * * * * * 3494 0 0 I 58 * * * * 3654 * * 469 * 4583 * * * * * * * 2676 * * 58 0 * * * * * * 3494 0 0 M 59 2942 * * * 4364 * * 2747 * 5612 2874 * * 4531 * 4219 2489 2057 * * 59 0 * * * * * * 3261 0 0 P 60 * * * * * * * * * * * * 178 * * 3627 4819 * * * 60 0 * * * * * * 2991 0 0 A 61 1462 * * 3334 * 3835 4896 * 4638 3993 * * * 3596 * 2008 * * * * 61 0 * * * * * * 2952 0 0 Q 62 * * * 3758 * 5649 3190 * 1626 * * 5157 * 4400 2031 2973 5318 * * * 62 0 * * * * * * 2900 0 0 P 63 * * 4971 3568 4930 * * * * * * 2682 1175 * 4566 3436 4431 * * 3808 63 0 * * * * * * 2662 0 0 V 64 3838 * * * * * * 1941 * 2335 4928 * 4899 * * * * 1304 * * 64 0 * * * * * * 2624 0 0 Q 65 * * 5278 3248 * * 3458 * 3695 * 4517 2707 * 2619 3192 2686 * 3711 * * 65 0 * * * * * * 2638 0 0 L 66 4494 * * * * * 4767 4066 * 682 2590 * * * * 3842 * * * * 66 0 * * * * * * 2581 0 0 Y 67 * * * * 1964 * 2030 * * * * * * * * * * * * 1003 67 0 * * 0 * * * 2270 0 0 //