HHsearch 1.5 NAME c5xyid_ FAM FILE c5xyid_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5xyid_.a3m DATE Sat Sep 2 08:28:11 2017 LENG 52 match states, 52 columns in multiple alignment FILT 37 out of 41 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.4552 2.2102 SEQ >ss_dssp CCCCSCCSSCTTSTTSSCTTTSSCSSEECGGGCCEEHHHHHHTSTTTTCCCC >sa_dssp EEEEEEDEECECBEECCAEDDEEDEDDCEEEECCBADDBCEECCEEDEDEEE >ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCEEHHHCHHHHHHHHHHHHHHCCCCCC >ss_conf 9875775457886542113402767621022317789999977642385249 >Consensus xxxkhprxxgxGsgxRxCrxCgxxxglIrkYglxlCRqCFRExAxdiGFxKy >c5xyid_ FVPKHPRDNAKGSVERSCRICGKRRGVIRQYRLNICRRCFRERAELLGFKKY >UniRef50_Q4CMS5(11-55:57) Ribosomal protein S29, putative n=6 Tax=Eukaryota RepID=Q4CMS5_TRYCR E=7e-06 s/c=1.15 id=46% cov=88% ------QKIGMGKGSRHCVICSNQKAVIRKYELNVCRQCFRENAANIGFSK- >UniRef50_Q74NE6(20-67:69) 30S ribosomal protein S14P n=20 Tax=Archaea RepID=RS14_NANEQ E=7e-09 s/c=1.29 id=42% cov=92% -----PKERKFGKGARRCERCGRYDGIIRRYGLYLCKDCFKEVAHELGFFKW >UniRef50_B9ZHX2(27-64:65) Ribosomal protein S14 n=2 Tax=Halobacteriaceae RepID=B9ZHX2_NATMA E=1e-08 s/c=1.61 id=44% cov=75% --------------QRVCRDTGREQGLIGTYDIWLCRQSFREMARDMGFRKY >UniRef50_Q5JJG2(9-55:56) 30S ribosomal protein S14P n=11 Tax=Archaea RepID=RS14_PYRKO E=1e-07 s/c=1.22 id=50% cov=92% ---RKPRKFGKG--ARRCMRCGQYGPIIRIHGLMLCRHCFREVAPKLGFKKY >UniRef50_Q8SS73(9-54:55) 40S ribosomal protein S29 n=1 Tax=Encephalitozoon cuniculi RepID=RS29_ENCCU E=0.0005 s/c=0.99 id=47% cov=90% ----HSHRKPFGKGSRSCVSCYTFRGIIRK--LMMCRRCFREYAGDIGFAIY >UniRef50_Q5I7K3(10-55:56) 40S ribosomal protein S29 n=54 Tax=cellular organisms RepID=RS29_WHEAT E=9e-10 s/c=1.40 id=51% cov=90% ----HPKNYGAGS--RVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKY >UniRef50_C5PBJ3(8-55:56) 40S ribosomal protein S29, putative n=2 Tax=Coccidioides RepID=C5PBJ3_COCP7 E=9e-09 s/c=1.28 id=43% cov=94% ----YSRPRNYGKGSRQCRVCAHKAGLIRKYGLLVCRQCFREKSQDIGFVKY >UniRef50_A8B7H6(100-135:137) Ribosomal protein S29A n=2 Tax=Giardia intestinalis RepID=A8B7H6_GIALA E=2e-08 s/c=1.67 id=57% cov=71% ---------------RECRICGNYNSVYRKYGLFICRRCFKENAGKIGFVK- >UniRef50_O28368(2-50:51) 30S ribosomal protein S14P n=2 Tax=Euryarchaeota RepID=RS14_ARCFU E=8e-06 s/c=1.05 id=54% cov=96% ---KKERTKVFGRGANECRRCGRRRGLIRMYGLYLCRQCFREVASELGFKKY # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 0 * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 V 2 * * * * * * * * * * * * * * * * * 0 * * 2 0 * * * * * * 1000 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 1000 0 0 K 4 * * * * * * * * 330 * * * * * 2291 * * * * * 4 0 * * * * * * 1845 0 0 H 5 * * * * * * 769 * 2016 * * * * * * * * * * 2592 5 0 * * * * * * 2379 0 0 P 6 * * * 4599 * * * * * * * * 366 * * 2452 * * * * 6 0 * * * * * * 2541 0 0 R 7 * * * * * * 4084 * 1865 * * * * 4236 806 * * * 4585 * 7 0 * * * * * * 2602 0 0 D 8 * * 4021 4023 * * * * 1456 * * 2437 2911 * 3551 * 3192 * * * 8 0 * * * * * * 2602 0 0 N 9 * * * * 2963 * * 4236 2167 * * 4021 * * 2783 * * * * 1362 9 0 * * * * * * 2602 0 0 A 10 4021 * * * * 810 * 4934 2958 * * 5147 4084 * 4344 * 5059 4637 * * 10 0 * * * * * * 2602 0 0 K 11 4850 * * * 2026 * * * 1224 * 3324 * 3886 5220 * * * * * 3358 11 62 * 4567 * * * * 2615 0 0 G 12 3640 * * * * 121 * * * * * * * * * * * * * * 12 77 * 4272 * * * 0 2627 0 1000 S 13 * * * * * * * * 1777 * * * * * 2643 987 * * * 4523 13 833 * 1189 * * 1000 1000 2599 0 1273 V 14 3435 * * * * 294 * * * * * * * * * * * 3444 * * 14 0 * * * * 3007 192 2347 0 2003 E 15 1234 * * 3668 * * * 4261 * * * * * 2773 * 1748 * * * * 15 0 * * * * 0 * 2481 0 1934 R 16 * * * * * * * * 3737 * * 3615 * 4663 315 * * * * * 16 0 * * * * * * 2610 0 0 S 17 * * * 2625 * 3941 4765 * 3527 * * * 5204 2610 2312 2912 * 3296 * 5491 17 0 * * * * * * 2673 0 0 C 18 * 58 * * * * * * * * * * * * * 4655 * * * * 18 0 * * * * * * 2678 0 0 R 19 * * * 4243 * * * * 5382 * 4244 * * 3471 686 4467 4976 3610 * * 19 0 * * * * * * 2588 0 0 I 20 5756 * 3914 * * * * 2807 * * * * * * 1499 4385 * 1432 * * 20 0 * * * * * * 2588 0 0 C 21 * 206 * * * * * * * * * * * * * * 2910 * * * 21 0 * * * * * * 2588 0 0 G 22 2706 * * 4653 * 676 * * * * * * * * * 3407 4685 * * 4385 22 0 * * * * * * 2588 0 0 K 23 * * 3699 * * 5618 2841 * 4705 * * 1923 * 4244 1700 5546 3659 * * * 23 0 * * * * * * 2588 0 0 R 24 * * * 4099 4385 * 2853 * 2847 * 3907 5640 6368 3439 2166 5042 * 5795 * 2698 24 100 3907 * 1000 1000 * * 2588 1000 0 R 25 3040 * 3571 * * 3821 3044 * 4877 * 3907 4365 * 2726 3021 3337 5546 * 4103 * 25 26 5795 * 0 * * * 2588 1000 0 G 26 2457 * * * * 481 * * * * * * 4244 * * 4365 * * * * 26 0 * * * * * * 2588 0 0 V 27 * * * * * * * 2090 * 783 4976 * * * * * * 2716 * * 27 0 * * * * * * 2588 0 0 I 28 * * * * * * * 339 * * * * * * * * * 2638 * 4365 28 0 * * * * * * 2588 0 0 R 29 * * * * * 2975 * * * * * * * 4996 347 4182 * * * * 29 0 * * * * * * 2588 0 0 Q 30 * * * * * * * 4244 468 * 5615 * * 4705 2945 * 4806 * * * 30 71 * 4385 * * * * 2588 0 0 Y 31 * * * * * * 4210 * * * * * * * * * * * * 80 31 0 * * * * * 0 2537 0 1000 R 32 * * 2918 4746 * 456 * * * * * 4017 * * 4649 * * * * * 32 0 * * * * 0 * 2537 0 1000 L 33 * * * * * * * 2092 * 528 3797 * * * * * * * * * 33 0 * * * * * * 2588 0 0 N 34 * * 4226 * 4365 * * * * 4333 2599 1413 * * * 4217 * * 3491 2598 34 0 * * * * * * 2588 0 0 I 35 * 4558 * * * * * 1744 * 1183 2891 * * * * * * 3579 * * 35 0 * * * * * * 2588 0 0 C 36 * 100 * * * * * * 3907 * * * * * * * * * * * 36 0 * * * * * * 2588 0 0 R 37 * * * * * * * * 4243 * * * * * 78 * * * * * 37 0 * * * * * * 2588 0 0 R 38 * * 4243 * * * 3704 * * * * * * 523 2517 * * * * * 38 0 * * * * * * 2588 0 0 C 39 * 207 * * * * * * * * * * * * * 3907 * 3899 * * 39 0 * * * * * * 2587 0 0 F 40 * * * * 0 * * * * * * * * * * * * * * * 40 0 * * * * * * 2587 0 0 R 41 * * * * * * * * 3297 * * * * * 155 * * * * * 41 0 * * * * * * 2587 0 0 E 42 * * * 112 * * * * * * * * * 4621 * 4879 * * * * 42 0 * * * * * * 2587 0 0 R 43 * * 4879 * * * * 2552 2582 5489 3907 3590 * 5594 3245 * * 2610 * 2586 43 0 * * * * * * 2587 0 0 A 44 182 * * * * * * * * * * * * * * 3075 * * * * 44 0 * * * * * * 2587 0 0 E 45 4204 * * 4700 * 3364 3389 * 3141 3899 * 4630 2624 2950 2747 4229 * * * * 45 0 * * * * * * 2587 0 0 L 46 * * 772 3468 * * * * 2337 4700 * 4147 * * * * 4990 * * * 46 0 * * * * * * 2587 0 0 L 47 * * * * * * * 925 * 1977 2189 * * * * * * * * * 47 0 * * * * * * 2587 0 0 G 48 * * * * * 0 * * * * * * * * * * * * * * 48 0 * * * * * * 2587 0 0 F 49 * * * * 100 * * * * * * * * * * * * * 3899 * 49 0 * * * * * * 2587 0 0 K 50 4370 * 5494 3456 4238 * 4672 3824 1499 * * 5532 * 4644 3470 4867 * 3294 * 4897 50 0 * * * * * * 2587 0 0 K 51 * * * * * * * 4370 72 * * * * * * * * * * * 51 0 * * * * * * 2587 0 0 Y 52 * * * * 4399 * 3847 * * * * * * * * * * * 3656 315 52 0 * * 0 * * * 2509 0 0 //