HHsearch 1.5 NAME c5xyib_ FAM FILE c5xyib_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5xyib_.a3m DATE Sat Sep 2 08:29:54 2017 LENG 82 match states, 82 columns in multiple alignment FILT 28 out of 32 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4188 0.3751 SEQ >ss_dssp CCSCCCCSSCCHHHHHHSCTTTSSSCCCSCCEEEEBCSSCCCCEEEESSCSSCBCCSSSCSCSEECCSSSCEECSSCBCCCC >sa_dssp EEEEEEEEEDEEEDDEEDEDEEBEEEEEDCEECBACBDECECDCEBDADCEEDCDBEECEECBACDEEDEBEDDEEBDDDEE >ss_pred CCCHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEECCCCCEEEEECCCEEEECCCCEEEEC >ss_conf 9410232087779998633432111079715899981898770179726764899456674344315840483278558759 >Consensus xxxxxdllxpxxxxexxkhKxkrLvxxPnSxFmxVkCxxCxnixivFShAxtxVxCxxCgxxLxxPTGGKaklxxxxxfrxx >c5xyib_ TTLDVDILHPSVEQELHTNKKKTLVPNPRSEFLSLRCPSCTGLTTAFSHSNVPVFCKNCQTPLATPTGGRILLADQVEIRPR >UniRef50_A8BJL1(42-119:124) Ribosomal protein S27 n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BJL1_GIALA E=7e-12 s/c=0.92 id=38% cov=95% -SMNVDLLYPDPVEEQRKHKLKRLVQGPNSYFLEIKCAGCQDIVVVYSHANTPVFCPGCTSQISIPTGGKCAFTSQVE---- >UniRef50_Q3LW62(8-85:93) Ribosomal protein S27 n=1 Tax=Bigelowiella natans RepID=Q3LW62_BIGNA E=1e-05 s/c=0.65 id=30% cov=96% ----LDLSNPSKKTEAKKHKLKRLIQSPNSHYIATKCLKCKKINIIFSHSVFWKTCVDCSTLLTRPSGGKFKSSKSMQIVKR >UniRef50_A9A5Z8(8-61:65) Ribosomal protein S27E n=2 Tax=marine archaeal group 1 RepID=A9A5Z8_NITMS E=0.0002 s/c=0.87 id=29% cov=67% ------------------------IPKPSSKFQKVNCNECGELQIVYSHASTQVACNSCGNAIAEATGSKAKINGKVS---- >UniRef50_P38654(4-83:84) 40S ribosomal protein S27 n=7 Tax=Entamoeba RepID=RS27_ENTHI E=5e-23 s/c=1.35 id=41% cov=99% --IEVDLLNPTAASEAKAHKMKRLVPTPNSYFLEIKCPKCGATTTTFSHAHRQILCQKCGQPLGQPTGGKLKLTQQCKFRIK >UniRef50_Q9AW40(7-80:81) 40S ribosomal protein S27 n=1 Tax=Guillardia theta RepID=Q9AW40_GUITH E=7e-20 s/c=1.33 id=36% cov=89% -----NLLNEELEKM--KHKKKRIIPNPNSYFINIICKNCKNKNIIFSHSQTKIVCKNCALNLCYPTGGKARLIKGCKF--- >UniRef50_Q6QI38(204-254:496) LRRGT00170 n=2 Tax=Rattus norvegicus RepID=Q6QI38_RAT E=4e-16 s/c=1.68 id=31% cov=63% ----------------RKHKKKHLVQSPSSYFMDVKYLGCYKVPNIFSQEHTVVLYDGCSTVFCQPT--------------- >UniRef50_O27364(13-58:63) 30S ribosomal protein S27e n=7 Tax=Euryarchaeota RepID=RS27_METTH E=3e-07 s/c=1.22 id=30% cov=57% -------------------------------FLRVKCLDCGNQQVVFDRAASYVQCIICGKTLVEPTGGKSKIKAQI----- >UniRef50_Q8SS34(1-79:85) 40S RIBOSOMAL PROTEIN S27 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS34_ENCCU E=7e-20 s/c=1.24 id=28% cov=98% --MASDLAFPTREKVGSTYKKDRLYREGNGFFMYVRCGGCRHTTCCYSHSQTNISCPGCGDIILTSSGGRAVVSPNCEFKK- >UniRef50_A0RY94(8-61:224) Ribosomal protein S27E n=1 Tax=Cenarchaeum symbiosum RepID=A0RY94_CENSY E=2e-13 s/c=1.43 id=38% cov=61% ------------------------VPEPTSRFVKIECESCGSPTIVYSMAKSAVNCRFCGNLLAEPAGGKAVL--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 1000 0 0 T 2 * * * * * * * * * * * * * * * 1000 1000 * * * 2 0 * * * * * * 1527 0 0 L 3 * * * * * * * 3175 * 1005 1355 * * * * * * * * * 3 0 * * * * * * 2509 0 0 D 4 1180 * 2355 2227 * * * * * * * 3404 * * * 4180 * * * * 4 0 * * * * * * 2501 0 0 V 5 * * * * * * * 4104 3994 3069 * * * * 2390 2680 * 1276 * * 5 0 * * * * * * 2692 0 0 D 6 * * 154 * * * * * * * * 3307 * * * * * * * * 6 0 * * * * * * 2749 0 0 I 7 * * * * 4387 * * 3381 * 224 * * * * * * * * * * 7 0 * * * * * * 2749 0 0 L 8 2965 * * * * * * 4941 * 417 * * * * * 3464 * * * * 8 0 * * * * * * 2783 0 0 H 9 * * * * 2965 * 1687 * * * * 1216 * 3839 * * * * * 4036 9 0 * * * * * * 2783 0 0 P 10 * * * 3419 * * * * * * * * 257 * * * 3839 * * * 10 0 * * * * * * 2783 0 0 S 11 3839 * 4036 2793 * * * 3816 * 4519 * * 4744 * * 1567 2088 * * * 11 0 * * * * * * 2783 0 0 V 12 2222 * * * 4941 * * * 3464 3012 * * 2016 * 2965 * * 3440 * 3816 12 0 * * * * * * 2783 0 0 E 13 2389 * 4941 988 * * * * 2640 * * * * 4298 * * * 4036 * * 13 0 * * * * * * 2783 0 0 Q 14 * * * 1857 * * * * 1871 3839 * * * 3440 4298 2764 3464 * * * 14 0 * * * * * * 2783 0 0 E 15 * * * 461 * * * * 4271 * 3419 * * * * * * 2965 * * 15 142 * 3419 * * * * 2783 0 0 L 16 1903 * * * * 2868 * 4158 2299 3302 * * * 2812 3434 * * * * * 16 0 * * * * * 0 2672 0 1000 H 17 * * * * * * 3448 * 1994 * * * * 3770 1159 2875 * * * * 17 0 * * * * 0 * 2811 0 1000 T 18 4011 4373 * * * * 4439 * 822 * * * * 5019 4839 * 2236 * * * 18 0 * * * * * * 2910 0 0 N 19 * * * * * * 568 * 4439 * * 2729 * * * * * * * 2960 19 0 * * * * * * 2910 0 0 K 20 * * * * * * * * 0 * * * * * * * * * * * 20 0 * * * * * * 2910 0 0 K 21 * * * * 3898 * * * 913 1558 4011 * * * * * * * * * 21 68 * 4439 * * * * 2910 0 0 K 22 * * 3015 * * * * * 300 * * * * * 3969 * * * * * 22 0 * * * * 0 * 3018 0 1000 T 23 * * * * * * 3210 * * * * 3981 * * 688 * 2843 3871 * * 23 0 * * * * * * 2998 0 0 L 24 * * * * * * * 3746 * 112 * * * * * * * * * * 24 0 * * * * * * 2998 0 0 V 25 * * * * * * * 1483 * * * * * * * * * 918 * 3145 25 0 * * * * * * 3207 0 0 P 26 * * * * * * * * * * * * 1143 1204 3145 * * * * * 26 0 * * * * * * 3207 0 0 N 27 3722 * * 2491 * 3814 4199 * 4104 * 4215 2960 * 4245 * 1815 4531 * * * 27 0 * * * * * * 3207 0 0 P 28 * * * * * 3145 * * * * * * 173 * * * * * * * 28 0 * * * * * * 3207 0 0 R 29 * * * * * * * * * * * 779 * * 2120 3034 3939 * * * 29 0 * * * * * * 3471 0 0 S 30 * * * * * 2993 * * * * * * * * * 194 * * * * 30 0 * * * * * * 3595 0 0 E 31 * * * 3961 3119 * 2828 * 2851 * * * * * 3253 4786 * * * 1322 31 0 * * * * * * 3595 0 0 F 32 * * * * 125 * * * * * * * * * * * * * * 3591 32 0 * * * * * * 3900 0 0 L 33 * * * * * * * 2246 * 1964 1603 * * 4459 * 4657 * 3077 * * 33 0 * * * * * * 3900 0 0 S 34 3591 * 1795 3668 * * * * 1990 * * 4354 * * 2922 4115 * * * 4061 34 0 * * * * * * 3900 0 0 L 35 * * * * * * * 2023 * 4115 5529 * * * * * 3591 757 * * 35 0 * * * * * * 3900 0 0 R 36 * * * 4188 * * 4330 4354 876 * * 4459 * 4588 2431 * * 5096 * * 36 0 * * * * * * 3900 0 0 C 37 * 100 * * * * * * * * * * * * * * * * * 3894 37 0 * * * * * * 3900 0 0 P 38 3656 * 4330 4188 * 4061 * 5348 4354 2266 * 3555 1704 5735 4820 5123 * * * * 38 0 * * * * * * 3900 0 0 S 39 * * 2032 4457 * 1531 * * 2625 * * 4353 * 4636 * 3149 * * * * 39 0 * * * * * * 3900 0 0 C 40 * 62 * * * * * * * * * * * * 4580 * * * * * 40 0 * * * * * * 3900 0 0 T 41 * * 4459 3659 3890 1945 * * 2542 5709 * * * 3651 4058 * 4113 * * 2644 41 0 * * * * * * 3900 0 0 G 42 4665 * 4665 3517 * 4113 4058 * 2120 * * 1281 * * * 4186 5677 * * * 42 0 * * * * * * 3900 0 0 L 43 * * * 2412 * * * 1549 4353 3275 * * 4186 4991 * * 3330 2918 * * 43 0 * * * * * * 3900 0 0 T 44 * * * * * * * * * * * 2922 3890 1435 * 5113 1465 4665 * * 44 0 * * * * * * 3900 0 0 T 45 * 4058 * * * * * 1818 * * 4636 3890 * * * * 1760 1980 * * 45 0 * * * * * * 3900 0 0 A 46 4113 4058 * * * * * 1577 * 4328 * * * * * * 3884 1219 * * 46 0 * * * * * * 3900 0 0 F 47 * * * * 322 * * * * * * * * * * * * * * 2322 47 0 * * * * * * 3900 0 0 S 48 4817 * 3519 * * 4328 * * * * * * * * * 344 4654 * * * 48 0 * * * * * * 3900 0 0 H 49 * * * * * * 752 * 3204 * 4186 4636 * 3890 2887 * * * * * 49 0 * * * * * * 3900 0 0 S 50 800 * * 3890 * * * * * * * * 3483 * * 1895 * * * * 50 0 * * * * * * 3900 0 0 N 51 2638 * * * * * 3226 * 4186 * * 3363 * 1740 * 2564 5113 3590 * * 51 0 * * * * * * 3900 0 0 V 52 * * * * 3590 * * * * * 5142 4328 * * 4665 2298 893 4113 * * 52 0 * * * * * * 3900 0 0 P 53 3755 * 5241 4654 * * * * 3764 * * 4058 3363 3557 * * 2791 1811 3590 4991 53 0 * * * * * * 3900 0 0 V 54 * * * * * * * 2407 3590 * * * * * * * * 457 * * 54 0 * * * * * * 3900 0 0 F 55 4457 * * * 3363 * * 4065 3126 2438 * 3255 * 4991 4239 4058 2861 3163 * * 55 0 * * * * * * 3900 0 0 C 56 * 110 * * * * * * * * * * * * * * * * * 3763 56 0 * * * * * * 3505 0 0 K 57 4289 * 3763 5344 * 5282 * 3781 3217 3057 * 3303 3119 3851 4138 * 5516 2643 * * 57 0 * * * * * * 3505 0 0 N 58 * * 3740 * 4138 1753 * 3211 4502 * * 2908 * * * 3463 * 2353 * * 58 0 * * * * * * 3505 0 0 C 59 * 0 * * * * * * * * * * * * * * * * * * 59 0 * * * * * * 3505 0 0 Q 60 4218 * * * * 1005 * * * * * 3646 * 3653 * 2221 3754 * * * 60 0 * * * * * * 3505 0 0 T 61 4026 * 3919 4696 * * * * 3781 4218 * 3025 * 4502 3648 3320 1472 * * * 61 0 * * * * * * 3505 0 0 P 62 3920 * 5357 * * * * 3137 * 2925 * 4218 3352 4352 * * 2227 2000 * * 62 0 * * * * * * 3505 0 0 L 63 * * * * 3763 * * 1960 * 579 * * * * * * * * * * 63 0 * * * * * * 3505 0 0 A 64 1391 1808 * * * 4502 * * * 3919 * * * * * 4352 3740 3337 * * 64 0 * * * * * * 3505 0 0 T 65 * * * 2256 * * * 4352 3126 * * * * 1845 3740 * 2184 * * 4218 65 0 * * * * * * 3505 0 0 P 66 3920 * * * * * * * * * * * 274 * * 3227 * * * * 66 0 * * * * * * 3505 0 0 T 67 4138 * * * * * * * * * * * * * 4618 2827 393 * * * 67 0 * * * * * * 3505 0 0 G 68 * * * * * 66 * * * * * * * * 4475 * * * * * 68 0 * * * * * * 3408 0 0 G 69 * * * * * 103 * * * * * * * * * 3860 * * * * 69 0 * * * * * * 3408 0 0 R 70 * * * 4145 * * * * 305 * * * * * 2902 * * * * * 70 0 * * * * * * 3418 0 0 I 71 533 4008 * * 3553 * * 3991 * 4255 * * * * * 4430 * * * * 71 0 * * * * * * 3420 0 0 L 72 4008 * 4008 * * * * * 1010 3991 * 4879 * * 2808 * * 2843 * * 72 0 * * * * * * 3420 0 0 L 73 * * * * 3330 * * 2206 * 935 * * * * * 3553 * 3722 * * 73 0 * * * * * * 3420 0 0 A 74 2827 * * * * * * 3801 3599 * * 3308 * * * 1899 1574 * * * 74 0 * * * * * * 3196 0 0 D 75 3488 * 3555 1933 * 3205 * * 2443 * * * 3000 3854 * 3691 * * * * 75 0 * * * * * * 3155 0 0 Q 76 * * * * * 1562 * * 3205 * * 3000 * 1640 * 3225 * * * * 76 0 * * * * * * 3155 0 0 V 77 * 1043 * * * * * 3488 * * 3225 * * * * * 4391 1884 * * 77 0 * * * * * * 3155 0 0 E 78 * * * 1643 * * * * 2528 * * * * 3226 * 1324 * * * * 78 0 * * * * * * 2841 0 0 I 79 * * * * 423 * * 1977 * * * * * * * * * * * * 79 0 * * * * * * 2585 0 0 R 80 * * * * * * * * 2489 * * * * * 578 * * 2720 * * 80 0 * * * * * * 2491 0 0 P 81 * * * * * * * 3226 1048 * * * 2844 * 1888 * * * * * 81 0 * * * * * * 2491 0 0 R 82 * * * * * * * * 634 * * * * * 1491 * * * * * 82 0 * * 0 * * * 2168 0 0 //