HHsearch 1.5 NAME c5xxuR_ FAM FILE c5xxuR_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5xxuR_.a3m DATE Sat Sep 2 08:32:11 2017 LENG 117 match states, 117 columns in multiple alignment FILT 45 out of 49 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4261 0.5136 SEQ >ss_dssp CCCCCHHHHHHHHHHHHHSTTTCCSCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHCCCSCSSSCSSSBCCCHH HHHHHHHHCCCCCBCCC >sa_dssp EEEDEEEBDEDADDBACEDDEEBDEDDEDABECACECDECEDEECCDDBACBACDABEDCEEDEBEDBECDDCDDDDEEEEEEEEEEEDEEEEDEEBDEE DBDECEEEEEEEDDCDE >ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCHHHCCCCCCCCCHH HHHHHHHHCCCCCCCCC >ss_conf 9641678999999999973224057868889999997200452035789999999999984087540688832466764542165211101110102899 99999981889865329 >Consensus GxIrxkxiKrxaxxliekYxxxxtxDFxxNKxvveeitxvxSKklRNkIAGYvThLxKriqxgxvrgisikxqeeerErrxxxvpxxSxxDxxxixVDxx TxeMLkxlxxxlxxxxv >c5xxuR_ GRVRTRTVKRAARQIVEKYYAKLTLDFQINKKISEEVAVIPSKRMRNRVAGFVTHLMKRIQKGPVRGISLKLQEEERERRMDFVPERSEVDVATITVDQD TADMLRALDINLPNVVV >UniRef50_UPI00015531AB(19-85:128) PREDICTED: similar to OTTHUMP00000016594 n=2 Tax=Murinae RepID=UPI00015531AB E=1e-10 s/c=1.00 id=40% cov=53% GYICIKTGKKAAWVITEKNYTGLSNDLHNKKDLCKEIIIFPSKKLY-KIAGFVMRLMKQIQR-------------------------------------- ----------------- >UniRef50_Q4TBI5(317-358:372) Chromosome 13 SCAF7124, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodon nigroviridis RepID=Q4TBI5_TETNG E=4e-05 s/c=1.17 id=42% cov=28% -------------------------------------------------------------------------------------QVSALDQELIEVDPD TKEMLKLLDFGsLSNLQV >UniRef50_A9A3R4(4-55:129) Putative uncharacterized protein n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A3R4_NITMS E=6e-05 s/c=0.93 id=36% cov=45% -------IKRLSYEVLETHKSKFGEDFADNKKILNEVSIVRSKGLKNEIAGYITNYIKK----------------------------------------- ----------------- >UniRef50_A0B7E2(16-74:86) SSU ribosomal protein S17E n=2 Tax=Euryarchaeota RepID=A0B7E2_METTP E=2e-10 s/c=1.13 id=28% cov=51% GCVKPSYIKNFAKKLLSTYEGEFTTDFEMNKEKVSAYTNVRNKAIRNRIAGYITRILEQ----------------------------------------- ----------------- >UniRef50_Q8SSF9(2-110:120) 40S ribosomal protein S17 n=2 Tax=Apansporoblastina RepID=RS17_ENCCU E=1e-24 s/c=1.04 id=42% cov=92% GCVRNKIVKRAARTIAEKYFQRLDSTFDHNLLVVQDVAVVQSKKLKNEIAGYLTSLYKKILKGTYNKVYIKSHEEERERKENVIPKESMLDVDCVEVDDV TMEMIKR---------- >UniRef50_Q9AW27(2-111:118) RpS17 protein n=1 Tax=Guillardia theta RepID=Q9AW27_GUITH E=5e-20 s/c=0.90 id=39% cov=93% GKVRTKTIKRSAKYIFIKYFKHLTIDFQENKFFCDEIALITSKSLRNKIAGYVTHLIKEFFKGKKKKIYtnIKFDINNIEINNKESEVFSNTELKLNLVD DETKQMIKKL--------- >UniRef50_Q74MA1(2-59:72) 30S ribosomal protein S17e n=1 Tax=Nanoarchaeum equitans RepID=RS17E_NANEQ E=3e-10 s/c=1.15 id=37% cov=50% GRVKIKVVKRTALELFKRYPDIWTKDFEKNKKLVQALLKKVSKKFRNQIAGYLVRLVK------------------------------------------ ----------------- >UniRef50_C3MZH2(2-59:79) 30S ribosomal protein S17e n=12 Tax=Sulfolobaceae RepID=RS17E_SULIA E=3e-09 s/c=1.09 id=32% cov=50% GNIYTKDIKRIVKEIYNQYKDEIKDDYNTNKQIVVRYVDVKSKKVRNRIAGYLTRYYK------------------------------------------ ----------------- >UniRef50_D2EGN2(2-58:72) 30S ribosomal protein S17e n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGN2_9EURY E=1e-08 s/c=1.07 id=34% cov=50% GRIRGKEIRNATIEVLKTYKGLFTDDFENNKEALSGI-ITAQKRTRNKIAGFITKLAK------------------------------------------ ----------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3431 0 0 R 2 * 3567 * * * * * * 2443 5094 * 2007 * * 2043 3619 4083 * * 3823 2 0 * * * * * * 3431 0 0 V 3 * * * * * * * 878 * * * * * * * 4503 * 1279 * * 3 0 * * * * * * 3505 0 0 R 4 * 3826 * * * * * * 1972 * * * * * 787 4503 * * * 4291 4 0 * * * * * * 3505 0 0 T 5 * * * * * 3449 * 2836 * * * 3518 2291 2826 * * 1575 * * * 5 0 * * * * * * 3505 0 0 R 6 4499 * * * * 5669 * * 930 * * 5231 * * 3274 2996 2681 * * * 6 0 * * * * * * 3521 0 0 T 7 4456 * 3433 4675 3050 * * 4060 * 5677 * 5240 * 4955 * * 1926 3882 * 2103 7 0 * * * * * * 3521 0 0 V 8 * * * * * 3927 * 1080 * * * * * 4866 * 5006 * 1337 * * 8 0 * * * * * * 3639 0 0 K 9 * * * * * * * * 106 * * * * * 3825 * * * * * 9 0 * * * * * * 3639 0 0 R 10 * * * * * * * 4517 1513 * * 3591 * 5303 1242 3739 * * * * 10 0 * * * * * * 3651 0 0 A 11 1349 * * * 5185 * 4982 2689 * 3216 5114 * * * * 4333 2405 5764 * * 11 0 * * * * * * 3651 0 0 A 12 886 * * * * 3796 * * * * * * * * * 2333 2811 4440 * * 12 0 * * * * * * 3651 0 0 R 13 * * 5195 4311 5533 * * 3994 1856 4627 4755 * * 4332 1809 * 4535 * 3613 5361 13 0 * * * * * * 3651 0 0 Q 14 4196 * * 1518 5115 5686 * 5837 3914 5324 * * * 2380 * * 4793 2470 * 5030 14 0 * * * * * * 3661 0 0 I 15 * * * * 3621 * * 1550 * 1142 5744 * * * * * * 3245 * * 15 0 * * * * * * 3798 0 0 V 16 4835 * * * 3203 * * 1773 * 1615 * * * * * * 3452 3307 * 4476 16 0 * * * * * * 3798 0 0 E 17 * * 3584 767 * * * 5127 2973 * * 4476 4634 5698 4530 5309 * * * * 17 0 * * * * * * 3798 0 0 K 18 * * * 3556 * 4586 * * 1425 * 5698 4378 * 2710 3070 * 2630 * * * 18 32 * 5533 * * * * 3798 0 0 Y 19 * * * * 5407 * 2539 * * * * 4304 * * 5236 * * * * 459 19 0 * * * * 0 * 3787 0 1000 Y 20 * * * 5309 3038 4277 4634 * 2749 * * * 2016 * 4928 * * 5533 * 1686 20 0 * * * * * * 3798 0 0 A 21 4521 * 2223 5660 * 3351 * * 4204 * 4737 3458 5215 4103 * 2766 2444 * * 5269 21 0 * * * * * * 3798 0 0 K 22 3945 5903 * 2677 * 4311 5127 4735 2537 3791 * * 4608 5907 2016 4526 * 4248 * * 22 0 * * * * * * 3798 0 0 L 23 * 5533 * * 1309 * * 3530 * 1337 4832 * * * * * * * 4125 * 23 0 * * * * * * 3798 0 0 T 24 * * 4835 * * 1921 * * 4476 * * 2952 * * * 4311 1070 * * * 24 0 * * * * * * 3798 0 0 L 25 * * 2965 4677 5482 4461 * 5127 2928 3359 * 2403 * * 3617 3234 2935 * * * 25 0 * * * * * * 3798 0 0 D 26 * * 274 * * * 5215 * * * * 3907 * * * 4486 4835 * * * 26 0 * * * * * * 3798 0 0 F 27 * * * * 145 * * * * 4311 * * * * * * * * * 4476 27 0 * * * * * * 3798 0 0 Q 28 5551 4608 3155 1315 * * 2150 * * * * 4476 * 4305 * * 5411 * * 3661 28 0 * * * * * * 3798 0 0 I 29 4338 * 4412 3247 5588 * 3186 5509 4735 5533 5309 3076 * 3883 * 4608 1671 5660 * * 29 0 * * * * * * 3798 0 0 N 30 * * 4634 * * * * * 4311 * * 137 * * * * * * * * 30 0 * * * * * * 3798 0 0 K 31 * * * * * * * * 115 3705 * * * * * * * * * * 31 0 * * * * * * 3798 0 0 K 32 3559 * 4311 3461 5127 * 3638 6123 1548 4835 * * * 4476 2434 * * 4516 * * 32 0 * * * * * * 3798 0 0 I 33 3576 * * * 5127 * * 2864 3679 2357 6259 * * 5269 5815 4681 5138 1503 * * 33 0 * * * * * * 3798 0 0 S 34 * 1840 * * * * * 5482 * 2782 * * * * * 5509 * 913 * * 34 0 * * * * * * 3798 0 0 E 35 3606 * 4315 1285 * 5907 * * 3442 * 4266 5551 * 3246 * 3250 5666 4476 * * 35 0 * * * * * * 3798 0 0 E 36 3994 * 2593 1024 * 5231 * * 3377 * * * * 4046 3770 * 5432 * * * 36 0 * * * * * * 3798 0 0 V 37 * * * * 5744 * 5269 1844 * 1960 * * * * * * 4608 2060 * 2847 37 39 * 5231 * * * * 3798 0 0 A 38 1842 * * * * 5544 * 3553 * 4712 * * * * * 3065 1282 4459 * * 38 0 * * * * 0 * 3771 0 1000 V 39 * 5421 3819 4360 * * * 1355 4735 5127 * 2757 * 4881 * 4599 3060 4133 * * 39 0 * * * * * * 3798 0 0 I 40 4688 * * * 4311 * * 1468 4735 5730 * * * * * 5215 3618 1379 * * 40 0 * * * * * * 3798 0 0 P 41 5231 * * 2776 * 5421 * * 3682 4608 * 5698 1834 3320 3452 4075 3367 4735 * * 41 0 * * * * * * 3798 0 0 S 42 5815 * * * * * * * * * * 3903 * 5231 * 385 3398 * * 5138 42 0 * * * * * * 3798 0 0 K 43 * * * 4642 * * * * 59 * * * * * * * * * * * 43 0 * * * * * * 3798 0 0 R 44 5309 * 5533 5411 * 4052 4437 5138 1164 * 5286 4642 6379 * 2858 5127 3564 5666 * * 44 0 * * * * * * 3798 0 0 M 45 * * * * 4735 * * 2986 * 861 4852 * * * * * 3873 2452 * * 45 0 * * * * * * 3798 0 0 R 46 * 4115 * * * * * * 3017 * * * * 4634 458 * * * * 4311 46 75 * 4311 * * * * 3798 0 0 N 47 * * * * * * * * * * * 68 * * * 4446 * * * * 47 0 * * * * 0 * 3726 0 1000 R 48 * * * 3560 * 5215 * * 1276 * 5421 * * 3837 1554 * * 4586 * * 48 0 * * * * * * 3798 0 0 V 49 * * * * * * * 303 * 4586 * * * * * * * 2756 * * 49 0 * * * * * * 3798 0 0 A 50 122 * * * * * * * * * * * * * * * 4642 4608 * * 50 0 * * * * * * 3798 0 0 G 51 * * * * * 59 * * * * * * * * * 4642 * * * * 51 0 * * * * * * 3798 0 0 F 52 * * * * 2297 * * * * * * * * * * * * * * 328 52 0 * * * * * * 3697 0 0 V 53 5533 * * * * * * 1602 * 3079 * * * * * 4872 4642 1131 * * 53 0 * * * * * * 3697 0 0 T 54 5114 * * * * * * 7234 * * 3388 * * * * * 266 4739 * * 54 0 * * * * * * 3662 0 0 H 55 * * * * * * 905 * 4779 * * 4855 * * 1516 4462 * * * * 55 0 * * * * * * 3552 0 0 L 56 * * * * * * * 3177 4212 417 * * * * * * * * * 3530 56 0 * * * * * * 3477 0 0 M 57 4679 * * * * * * 3354 5115 3955 1340 * * * * * 3647 2731 * 2792 57 0 * * * * * * 3484 0 0 K 58 * * * 4597 * 5517 * * 382 * * * * * 2559 * * * * * 58 0 * * * * * * 3439 0 0 R 59 * * * 4225 * * * * 3095 * * * * 1819 873 * * * * * 59 0 * * * * * * 3097 0 0 I 60 * * * * 2986 * * 563 * 2346 * * * * * * * * * * 60 0 * * * * * * 2711 0 0 Q 61 3494 * * 4255 3758 * * * * 3633 * * * 596 4550 * * * * * 61 0 * * * * * * 2711 0 0 K 62 * * * * * * 4430 * 1120 * * * * 4224 1648 * 3995 4097 * * 62 0 * * * * * * 2671 0 0 G 63 * * 3879 * * 177 * * * * * * * * * 4390 * * * * 63 0 * * * * * * 2629 0 0 P 64 * * * 3513 * * * * 3124 * * * 742 4390 * 3956 3509 * * * 64 0 * * * * * * 2629 0 0 V 65 * * * * * 4558 * * 3124 * * * * * * * * 405 * 3509 65 83 * 4165 * * * * 2629 0 0 R 66 * * * * * * * * 1826 * * 3430 * * 678 * * * * * 66 0 * * * * * 0 2616 0 1000 G 67 * * * * * 349 * * 2218 * * * * * * * * * * * 67 0 * * * * * 0 2616 0 1000 I 68 * * * * * * * 140 * * * * * * * * * 3430 * * 68 0 * * * * * 0 2616 0 1000 S 69 * * * * * * * * * * * * * * * 531 * * * 1700 69 188 3033 * 1000 1000 * 0 2616 1000 1000 L 70 * * * * * * * 608 * 1540 * * * * * * * * * * 70 0 * * * * * 0 2616 0 1000 K 71 * * * * * * * * 67 * * 4453 * * * * * * * * 71 0 * * * * 0 * 2616 0 1000 L 72 2803 * * * 3124 * * 3956 * 762 * * * * * 3509 * * * * 72 0 * * * * * * 2629 0 0 Q 73 * * 3124 * * * 2511 * * * * * * 612 4165 * * * * * 73 0 * * * * * * 2629 0 0 E 74 * * * 270 * 4165 * 3124 * * * * * * * * * * * * 74 0 * * * * * * 2629 0 0 E 75 * * * 393 * 4165 * * 3879 * * 3124 * * * * * * * * 75 86 * 4117 * * * * 2629 0 0 E 76 * * * 184 * * * * * * * 3061 * * * * * * * * 76 0 * * * * * 0 2621 0 1000 R 77 * * * * * * * 3061 3451 * * * * * 342 * * * * * 77 89 * 4064 * * 0 * 2621 0 1000 E 78 * * * 0 * * * * * * * * * * * * * * * * 78 0 * * * * 0 * 2616 0 1000 R 79 * * * * * * * 3124 4165 * * * * * 270 * * * * * 79 0 * * * * * * 2629 0 0 R 80 * * * * * * * * 1741 * * 3124 * * 771 * * * * * 80 0 * * * * * * 2629 0 0 M 81 4117 * 1901 2113 * * * * * 3956 1920 3124 * * * * * * * * 81 0 * * * * * * 2629 0 0 D 82 3513 * 1372 * * * * * 3124 * * 1675 * * * 4558 4165 * * * 82 0 * * * * * * 2629 0 0 F 83 * * * 3124 2000 * 4223 * * * * * * * * * * 3509 * 1018 83 0 * * * * * * 2629 0 0 V 84 4223 * * * * * * 2101 * * * * * 4025 * 3124 * 896 * * 84 0 * * * * * * 2629 0 0 P 85 * * * 3124 * * * * * * * * 247 * * 4558 * * * * 85 0 * * * * * * 2629 0 0 E 86 3240 * 3520 1027 * * * * 2566 * * * * 6369 * * * 2885 * * 86 0 * * * * * * 2682 0 0 R 87 * * * 3115 3542 4486 * 4368 3470 * * * * * 2780 * 2686 1669 * * 87 0 * * * * * * 3526 0 0 S 88 * * * * * 3401 * * * * * * * * * 143 * * * * 88 0 * * * * * * 3526 0 0 E 89 1430 * 4043 3321 * * 4063 3501 * * 4347 3542 * * * 3470 * 3401 * * 89 0 * * * * * * 3526 0 0 V 90 * * * * 3501 * * 3464 * 1411 * * * * * * 2897 1686 * * 90 0 * * * * * * 3526 0 0 D 91 * * 381 2592 * * * * 3915 * * * * * * * * * * * 91 185 3053 * 1585 585 * * 3526 1127 0 V 92 * * * * * * * 3470 * 3542 * * * 1396 * * 2693 1789 * * 92 0 * * * * * * 3526 0 0 A 93 4305 * 1435 1760 * * * * 3542 * 3501 * 4338 * * 4043 * * * * 93 0 * * * * * * 3526 0 0 T 94 3501 4347 4455 3915 * 3053 * 2455 3401 2610 * 3470 * * * * 3336 * * * 94 0 * * * * * * 3526 0 0 I 95 * * * * * * * 913 * 2486 * 3542 * * * * 4843 2559 * * 95 0 * * * * * * 3526 0 0 T 96 * * * 1333 * * 4063 * 3915 3542 * * * 4338 2880 4043 2783 * * * 96 0 * * * * * * 3526 0 0 V 97 * * * * * 3470 * 3501 * * * * * * * * * 284 * * 97 0 * * * * * * 3526 0 0 D 98 * * 0 * * * * * * * * * * * * * * * * * 98 0 * * * * * * 3526 0 0 Q 99 4862 * 2889 * * * * * 2105 * * * 1675 2394 * 3401 * * * * 99 0 * * * * * * 3526 0 0 D 100 4843 * 1270 2338 * * * 3401 4043 * * * * 4063 * * * 2863 * * 100 0 * * * * * * 3526 0 0 T 101 3501 * * * * * * * * * * * * * * * 284 3470 * * 101 0 * * * * * * 3526 0 0 A 102 3321 * * * 4063 * * * 1277 3160 3187 * * 2280 * * * * * * 102 0 * * * * * * 3526 0 0 D 103 * * 2780 1257 * * * * 2844 * * * * 2771 3470 4063 * * * * 103 0 * * * * * * 3526 0 0 M 104 * * * * * * * * * * 0 * * * * * * * * * 104 0 * * * * * * 3526 0 0 L 105 * * * * * * * 2122 * 470 * * * * 4368 * * * * * 105 0 * * * * * * 3526 0 0 R 106 3915 * * 2435 * * * * 1288 * * 4486 * 2746 4305 * 3395 * * * 106 136 3470 * 1000 1000 * * 3526 1000 0 A 107 4305 * * 3401 4338 3470 * * 3542 2422 * * * * 2559 2155 * 4368 * * 107 0 * * * * * * 3526 0 0 L 108 * * * * * * * * * 525 2674 * 4460 * * * * * * 3282 108 0 * * * * * * 3510 0 0 D 109 * * 1850 1842 * 1703 * * 3849 * * 3895 * * * * * * * * 109 0 * * * * * * 3184 0 0 I 110 * * * * 1796 * * 1430 * 3135 2771 * * * * * 3634 * * * 110 224 2795 * 0 * * * 3184 1466 0 N 111 * * 2368 * * 1200 4181 * * * * 2777 * * * 2557 * * * * 111 507 1755 * 0 * * * 2924 1293 0 L 112 * * * * * * * 1918 * 939 * * * * * * * 2227 * * 112 0 * * * * * * 2779 0 0 P 113 * * * * * * * * * * * * 723 * * 1343 * * * * 113 0 * * * * * * 2779 0 0 N 114 * * * * * 2455 * * * * * 792 * * 2058 * * * * * 114 0 * * * * * * 2590 0 0 V 115 * * * * 3690 * 3115 * * 1652 * * 4340 * 3003 * * 1667 * * 115 0 * * * * * * 2590 0 0 V 116 * * * * * * * * 3264 * * * * 1168 * * * 1149 * * 116 0 * * * * * * 2590 0 0 V 117 * * * * * * * * * * * * * * * * * 0 * * 117 0 * * 0 * * * 1832 0 0 //