HHsearch 1.5 NAME c5mmjt_ FAM FILE c5mmjt_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5mmjt_.a3m DATE Thu Feb 9 21:49:02 2017 LENG 107 match states, 107 columns in multiple alignment FILT 104 out of 134 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4285 -0.7779 SEQ >ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH TSCCCCC >sa_dssp EEEEDEEDCDEEDCDEDDEEDDEECEDDBEDCBEDBCDCBDDBDEEECDBEEDCEDBDECBEDBCDAADEBCEEDCCEEECBDECCDDADEDDEEBBDEC EDDEEEE >ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH CCCCCCC >ss_conf 9875235899999999999999999999999999999999602422355623689999999999999999986288310067779999999996899762 3135789 >Consensus xxxxxxSAxKRirqxekrrxrNkxxKSxikTxiKkvxxAixxgdxxxxxxxxdxexaxxxlxxaxsxiDKAvxKGViHkNxAARkKSRLxkkxnalkxxx xxxxxxx >c5mmjt_ TLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHH GWYTPSL >UniRef50_B2S2J8(1-86:95) 30S ribosomal protein S20 n=3 Tax=Treponema RepID=RS20_TREPS E=4e-08 s/c=0.69 id=32% cov=79% ---RSVSARKRHDQSEVRRMRGRMARSAARTCARRYLAAVTSGDRESSLP---------LLRSLVKRLDTAARKGVFARKAVARQKSRMCRLYNGV---- ------- >UniRef50_D1J786(1-97:102) Chloroplast 30S ribosomal protein S20 n=2 Tax=Phaeophyceae RepID=D1J786_ECTSI E=8e-08 s/c=0.60 id=28% cov=81% ------SAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDlivgqsPSDSVKKKLLASLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKK-- ------------- >UniRef50_B6ALQ9(1-86:87) Ribosomal protein S20 n=2 Tax=Leptospirillum sp. Group II RepID=B6ALQ9_9BACT E=9e-08 s/c=0.68 id=34% cov=72% ---------KDIKKNEKRRARNRQAVSMIRTMAKKVETLVSQGKK---------EEAVVALGEVVPVIDHAVNRRILHRNSASRKISRLTLKVN------ ------- >UniRef50_A1VRN0(12-97:106) 30S ribosomal protein S20 n=63 Tax=Proteobacteria RepID=RS20_POLNA E=2e-06 s/c=0.63 id=35% cov=79% ------SGRKRVRQDVKLNAANTSLRSKYRTAVKNVEKAVLAGDK---------DKAKDLFAKAQSIVDTISDKGIFHKNKAARDKSRLSAKVKALAL-- ------- >UniRef50_C7RDE6(1-86:88) Ribosomal protein S20 n=3 Tax=Anaerococcus RepID=C7RDE6_ANAPD E=9e-06 s/c=0.60 id=34% cov=77% ------SSKKRIDVARRNTLRNKSRKSEIKTLIKKFDAAIEE---------KDVEKATAIFKKADKRLKQAEAKNVMHKNKVARTTSRLAKALNQV---- ------- >UniRef50_B9XNE7(1-87:87) Ribosomal protein S20 n=1 Tax=bacterium Ellin514 RepID=B9XNE7_9BACT E=8e-05 s/c=0.55 id=33% cov=78% ------SAERRMRNSARKQKNNRSTTTRLHTLEKNYLQLVTAGKK---------DEATKAYQAVTSALDKAAKTGTVHRSTASRKKSRLALRLNKVK--- ------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 2098 384 * * * 1 0 * * * * * * 2056 0 0 L 2 * * * * * 2636 * 2597 * 1327 1862 * * * * * * * * * 2 0 * * * * * * 2696 0 0 K 3 1733 * * * * * * * 1931 * * * * 3184 1613 * * * * * 3 0 * * * * * * 3060 0 0 K 4 * * * * * * * * 1587 * * 2871 * * 1208 3356 * * * * 4 0 * * * * * * 3460 0 0 A 5 2399 * * * * * 4142 3026 4181 * * 3225 3695 * 3084 1869 * * * * 5 0 * * * * * * 3663 0 0 D 6 4307 * 2464 3284 * * * * 2263 4475 * * 2732 2772 4363 * * 3905 * * 6 0 * * * * * * 3722 0 0 S 7 * * * * * 5806 * * * * * 4684 * * * 118 5530 * * * 7 0 * * * * * * 4889 0 0 A 8 519 * * * * 6589 * * 4082 * * 6306 5741 4078 * 3358 6520 4899 * * 8 0 * * * * * * 4897 0 0 A 9 3630 5866 * 2696 * * * 2549 1623 3718 6946 6884 * 4444 3486 6127 6628 * * * 9 0 * * * * * * 4908 0 0 K 10 5241 * * * * * * * 142 * * * * * 3889 * * * * * 10 0 * * * * * * 4915 0 0 R 11 4200 * 5158 * * * 5282 * 5435 * 5433 * * * 271 5878 * * * * 11 0 * * * * * * 4915 0 0 T 12 2665 * 4729 5248 * * 4208 1745 * 3829 5044 4223 * * * 6134 4470 2305 * 6650 12 0 * * * * * * 4918 0 0 R 13 * * 4647 5618 * * * 6280 2473 3073 * 6404 * 4006 951 5481 * 6144 * * 13 0 * * * * * * 4918 0 0 Q 14 5571 * * * * * * 3202 4711 4139 * 5637 * 1289 4282 5205 2854 2954 * * 14 0 * * * * * * 4918 0 0 A 15 2752 * 3727 * * 7362 5948 3549 * * * 1899 * 5138 6510 1963 3261 * * * 15 0 * * * * * * 4918 0 0 E 16 3362 * 5260 1051 * * 6404 5283 3329 4163 * 4779 * 5673 4143 * 5913 3795 * * 16 0 * * * * * * 4918 0 0 T 17 5195 * * 4294 * * * * 1083 * * 6359 * 5129 1739 6510 4537 4180 * * 17 0 * * * * * * 4918 0 0 R 18 4132 * * 4460 * * 5346 * 3031 6620 * 2197 * 6919 1045 5081 * * * * 18 0 * * * * * * 4918 0 0 R 19 5221 * * 4670 6466 * 6017 * 5010 * * 3174 * 4847 856 * 2488 * * * 19 0 * * * * * * 4918 0 0 L 20 2366 * 6043 3612 6287 6966 * 3306 4769 1396 5308 * * 3656 6024 6039 7100 5160 * * 20 0 * * * * * * 4918 0 0 R 21 3934 * * 4307 * * 4118 3912 4703 5580 * 5596 * 4345 1029 6287 * 5145 * 3323 21 0 * * * * * * 4918 0 0 N 22 * * * * * 5682 * * * * * 28 * * * * * * * * 22 0 * * * * * * 4918 0 0 K 23 4068 5301 * * * 6590 6059 4880 1455 * 6448 4470 * 4110 1773 5150 5425 4948 * * 23 0 * * * * * * 4918 0 0 A 24 1722 * * 7045 5713 5361 6273 4498 4662 6510 4814 5188 * 4504 4646 1911 4524 4743 * 4488 24 0 * * * * * * 4918 0 0 R 25 4142 * 7268 5970 4878 * 6877 3766 5481 4217 5625 5399 * 3720 2410 5913 4742 3312 4310 2213 25 0 * * * * * * 4918 0 0 K 26 * * * * * * * 5111 735 4285 * * * 6083 2016 5646 5134 6859 * * 26 0 * * * * * * 4918 0 0 S 27 4631 * * 7045 7039 5775 * * 5141 * * 5478 * * * 479 2662 * * * 27 0 * * * * * * 4918 0 0 E 28 2331 * * 3131 5413 6669 6549 * 3231 5787 3331 6510 * 4198 2279 4307 3846 5183 * * 28 0 * * * * * * 4918 0 0 V 29 5682 6162 * * 5309 * * 2011 * 2257 2798 * * * * * 5613 1691 * 6620 29 0 * * * * * * 4918 0 0 K 30 * * * * * * 6624 * 1036 * * 6136 * * 1204 5875 4750 * * * 30 0 * * * * * * 4918 0 0 T 31 6750 * * 6083 7101 6262 6999 * 7039 6549 * 3576 * 7045 6907 6669 343 6201 * 5787 31 0 * * * * * * 4918 0 0 R 32 2093 5300 * 7026 3472 * * 4249 6413 2522 4791 * * 4235 4086 4094 4290 4741 * 3201 32 0 * * * * * * 4918 0 0 M 33 4501 * * 4172 6347 * * 1521 6123 3856 2895 * * * 6666 4560 3524 2552 * 6364 33 0 * * * * * * 4991 0 0 R 34 * * * * * * * * 327 * * * * * 2468 6546 6482 * * * 34 17 * 6401 * * * * 4991 0 0 K 35 4536 * * 4650 * * * * 870 6319 * 4028 * 4254 2753 4221 6139 5175 * * 35 39 * 5241 * * * 0 4983 0 1000 V 36 3560 4641 * * 2163 * 5747 4928 * 4507 5481 * * * * * 5852 1239 * 3425 36 0 * * * * 1480 640 4947 0 1964 F 37 * * 4797 2870 3992 * 4819 3577 3491 1842 6367 4718 * 4934 3191 6337 6851 4859 * 5085 37 13 * 6841 * * * 0 4958 0 1530 E 38 2863 * 4321 2591 6032 6635 6968 5474 2319 4723 7358 3816 * 4624 4192 4177 3699 4387 * * 38 25 * 5847 * * * 0 4956 0 1788 A 39 593 * * 5573 5120 * * 6697 5111 3219 7017 6700 6506 5555 6354 4949 6110 4936 * * 39 36 * 5329 * * * 0 4953 0 2187 L 40 3954 6286 * * * * * 1567 * 2065 4850 * * * * 6701 * 1728 * * 40 48 * 4919 * * 2113 379 4932 0 2434 D 41 3069 * 2943 1778 * 6304 5957 6745 3725 4353 * 5675 * 4739 * 3535 3182 4536 * * 41 143 * 3407 * * * 0 4960 0 2877 A 42 1649 * 4552 2459 * 4945 6200 6515 3562 5788 * 4359 * 4936 4971 2667 5259 * * * 42 197 * 2971 * * * 0 4955 0 3307 L 43 * * * * * 824 * * 2916 3259 * 5089 * * * 5678 * * * 2743 43 337 * 2265 * * 3800 107 4834 0 3744 K 44 3551 * 1307 3678 * 5466 * * 2722 * 5301 3243 * * 5345 3667 5377 * * * 44 169 * 3177 * * 4216 80 4814 0 4124 K 45 2500 * 4332 4499 4670 * 4474 * 1519 4648 * 4463 4094 4116 4129 * * 5639 * 5828 45 650 * 1463 * * 3250 160 4775 0 4199 K 46 3747 * 3812 2736 * * * * 2402 4884 * * * 4653 4215 3096 2097 4757 * * 46 22 * 6046 * * 3786 109 4461 0 4419 S 47 1718 * * * * 3991 * * 3841 5089 * 4069 3464 * * 2646 2158 * * * 47 273 * 2537 * * 4155 83 4493 0 4327 G 48 1444 * 2725 * * 4213 * * * 3869 * 2828 * * * 2823 5038 4436 * * 48 209 4612 3408 2585 263 4350 73 4320 1000 4511 A 49 2446 5049 * 3402 * * * * 3172 4256 * 4935 1931 * 3930 * 4860 2906 * * 49 66 * 4485 * * 2815 221 4258 0 4476 S 50 3157 * * 5142 5078 * * 5519 5227 5628 * 3344 4572 3912 5385 1973 2151 * * 4307 50 92 * 4014 * * 3082 181 4413 0 4270 T 51 2985 * 2849 4429 * 3479 * 5659 * 5422 * 3353 2904 2707 * 4010 4522 3933 * * 51 61 * 4589 * * 2791 225 4455 0 4268 E 52 2771 5318 4823 2132 * 4404 * * 2314 3936 * 3077 * 5782 5640 4466 5127 5594 * * 52 61 * 4585 * * 2083 388 4625 0 4217 E 53 5284 * 1172 3821 * 5111 5802 * 6293 * * 2244 4323 6280 * 4944 4297 4544 * * 53 61 * 4595 * * 2985 195 4718 0 4202 L 54 4046 * * 5992 * * * 2620 2688 2364 * * 5301 5277 3507 5413 4241 2350 * * 54 0 * * * * 976 1025 4713 0 4187 V 55 2829 * 2570 1310 5702 4980 * 4810 3866 * * 4648 6114 5070 * 6082 6177 5673 * * 55 26 * 5795 * * 2907 206 4808 0 3532 P 56 3087 * 3945 2052 5699 4479 * * 2747 4052 * 3265 5662 4697 6105 5493 4708 3930 * * 56 0 * * * * 1957 430 4867 0 3479 I 57 798 * 6919 * * * * 3157 4319 3459 5810 * * * * 5185 * 3083 * * 57 0 * * * * 2063 395 4814 0 3180 D 58 5079 * 5559 2135 * 5829 6795 5377 2394 4123 6013 5826 * 2970 5596 3916 2788 5018 * * 58 26 * 5790 * * 2936 202 4828 0 2952 N 59 2167 * 4475 2569 * * 5661 4773 2537 * * 4384 6504 3809 6726 5891 2794 4861 * * 59 21 * 6096 * * 2835 218 4794 0 2918 L 60 1697 * 5927 3724 5392 6155 * 4747 4473 1689 * 6470 * 4868 5390 4635 5207 6062 5824 * 60 0 * * * * 1576 590 4819 0 2883 I 61 5499 * * 6550 2463 * * 3418 6004 966 4405 * * * * * * 4533 * 3746 61 0 * * * * 1723 520 4857 0 2469 A 62 3352 * 5060 * * 5050 * * 3111 5051 5768 3339 5347 4170 2403 2343 4394 4324 * 6051 62 0 * * * * 1951 432 4858 0 2216 E 63 2469 * 4389 2798 5275 * 6447 4153 3360 3828 6167 4921 * 4440 5468 3139 5774 3168 * 6979 63 22 * 6045 * * 1549 603 4933 0 1899 A 64 846 5519 * * 4838 * * * * 5128 6877 * * * * 4529 3633 2243 * 6086 64 0 * * * * * 0 4911 0 1927 Y 65 3512 * 6001 4214 3475 * 5441 4053 6384 6337 * 5529 * 2563 * 4162 3601 2948 * 2423 65 0 * * * * * 0 4911 0 1927 S 66 6708 * * * * 6384 6365 * 1766 6310 * * 3485 4265 4988 1071 6516 * * * 66 0 * * * * * 0 4911 0 1927 A 67 2372 * 6384 4786 6681 * * 3578 2089 3383 * 4473 * 5238 3684 5748 4847 2926 * * 67 0 * * * * 615 1527 4911 0 1927 I 68 4987 5938 * * 5327 * * 1215 * 1518 7063 * * * * * * 3091 * 5481 68 0 * * * * * 0 4972 0 1000 D 69 5418 * 263 * * 6656 4957 * 6015 * 5397 6534 * * * 4840 * * * 5944 69 0 * * * * * 0 4972 0 1000 K 70 * * * * * 7026 5778 6889 763 * 7447 6671 * 3589 2504 4978 3839 * * * 70 0 * * * * * 0 4972 0 1000 A 71 660 4387 * * 5930 4118 * 5745 * 5296 4293 * * * * 3833 4575 5462 * 6015 71 0 * * * * * 0 4972 0 1000 V 72 1301 * * 5884 * 4804 * 4998 6065 6476 * * * * * 4957 5275 1231 * * 72 0 * * * * 0 * 4972 0 1000 V 73 3020 * 5292 6482 * 5055 * * 1871 6066 * 4554 * 3286 3911 2555 3757 3924 * * 73 0 * * * * * * 4991 0 0 K 74 5126 * * * * 7040 5286 * 489 * * 6891 * * 2867 5726 4725 5403 * * 74 0 * * * * * * 4991 0 0 G 75 * * * * * 393 5933 * 4230 * * 3390 * * 4285 5509 * * * * 75 0 * * * * * * 4991 0 0 T 76 4087 * * * 6667 * * 1689 * 3715 * * * * 5902 * 4210 1119 * 6204 76 0 * * * * * * 4991 0 0 L 77 * * * * 2851 * 5567 1298 * 1816 4489 * * * * * * 3853 * 4797 77 0 * * * * * * 4991 0 0 H 78 5098 * * * * * 240 * 3391 * * * * 5864 * 6436 * * * * 78 0 * * * * * * 4991 0 0 R 79 4090 * 5444 5635 * * * 6060 1024 4857 * * 5038 5744 2272 3934 5739 * 5924 * 79 0 * * * * * * 4992 0 0 N 80 6518 * * 5723 * 6263 * * 4027 * * 248 * * 5937 4742 * * * * 80 0 * * * * * * 4992 0 0 T 81 3732 * * 6030 6592 * * * 1932 * * 3137 * 3779 6119 6097 1402 7161 * 4789 81 0 * * * * * * 4992 0 0 A 82 407 * * * * 2578 * * * * * * * * * * * 3678 * * 82 0 * * * * * * 4993 0 0 A 83 874 * 4606 * * * * 5700 * * * 4534 * * * 1511 * * * * 83 0 * * * * * * 4993 0 0 R 84 5223 * * * * * 5142 * * * * 4431 * * 183 5844 * * * * 84 0 * * * * * * 4993 0 0 R 85 * * 4934 6490 * * 3957 6389 1194 5926 6479 4889 * 4546 2160 * 4372 6258 * 4223 85 0 * * * * * * 4993 0 0 K 86 6386 * * * * * * 3029 415 6442 6556 * * * * 6524 6844 3763 * * 86 0 * * * * * * 4993 0 0 S 87 2949 * * 6739 * 7138 * * 6268 * * 5700 * * * 283 * * * * 87 0 * * * * * * 4993 0 0 R 88 6127 * 5290 * * 5105 * * 3250 5430 5972 4546 * 4988 572 5327 * 6056 * * 88 0 * * * * * * 4993 0 0 L 89 6336 * * * 5694 * * 4043 * 347 3624 * * * * * 6258 5195 * * 89 0 * * * * * * 4993 0 0 A 90 1621 5466 6248 6216 4990 5688 4878 * * 6208 3447 3774 * 5389 * 2842 2468 6922 * 6616 90 0 * * * * * * 4916 0 0 R 91 2747 * 6499 5919 * 6647 * 6716 1393 3022 * 5727 * 5717 2047 * 5629 * * * 91 0 * * * * * * 4848 0 0 N 92 4070 * 5669 * * * 5120 6076 1169 3677 6207 4830 * 4365 2262 * * * * 4363 92 0 * * * * * * 4810 0 0 K 93 4540 * * * 4167 * * 2842 3436 2052 5289 * * * * * * 1603 * 3767 93 0 * * * * * * 4708 0 0 K 94 * * 5596 * * * 5071 * 1274 * * 957 * * * 5571 * * * * 94 0 * * * * * * 4647 0 0 V 95 1092 * 5802 3941 * 4853 * 4973 3012 * * * * 5608 * 3030 3825 4511 * * 95 0 * * * * * * 4495 0 0 V 96 3858 * * * 5165 * * 2363 4910 1331 4390 * * * * * 5188 2301 * * 96 0 * * * * * * 4411 0 0 E 97 4814 * 4383 2629 * * * * 861 4902 * * * 3718 3997 4950 * * * * 97 0 * * * * * * 3994 0 0 I 98 * * * * * * * 1450 3158 2434 * * * * * 3508 * 2005 * * 98 0 * * * * * * 3320 0 0 H 99 * * * 1950 * * 2128 * * 2005 * * * * * * 1925 * * * 99 0 * * * * * * 2105 0 0 H 100 * * * * * * 1023 * 1950 * * * * * 2005 * * * * * 100 0 * * * * * * 2105 0 0 G 101 * * * * * 0 * * * * * * * * * * * * * * 101 0 * * * * * * 1721 0 0 W 102 * * * * * * * * * * * * * * * * * * 0 * 102 0 * * * * * * 1396 0 0 Y 103 * * * * * * * * * * * * * * * * * * * 0 103 0 * * * * * * 1396 0 0 T 104 * * * * * * * * * * * * * * * * 1000 1000 * * 104 0 * * * * * * 1396 0 0 P 105 * * * * * * * * * * * * 0 * * * * * * * 105 0 * * * * * * 1396 0 0 S 106 * * * * * * * * * * * 1000 * * * 1000 * * * * 106 0 * * * * * * 1396 0 0 L 107 * * * * * * * * * 0 * * * * * * * * * * 107 0 * * 0 * * * 1000 0 0 //