HHsearch 1.5 NAME c4x8wE_ FAM FILE c4x8wE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4x8wE_.a3m DATE Sat Jan 16 08:22:08 2016 LENG 72 match states, 72 columns in multiple alignment FILT 30 out of 34 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4322 1.2656 SEQ >ss_dssp CCSCCCCCHHHHHHHTTEEEEEEEECCCTTSCCEEEEEEEECCSCCCCCCCSSHHHHHHHHHHHHHHHCCCC >sa_dssp EEEEEEEECDEDBEEEEDDCDDDECEEDEEEEEDDEDEEDEDEECECECEDEDEDCCEEDCDEDCEEDEEDE >ss_pred CCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC >ss_conf 970442489999997390789875565677847999996179987896057898999999999857653129 >Consensus xxxxdxxxLxxLaxxxxFxVxyxDxxkxxxgxxxxLVxLSTxPpxVChGsGxsxxxaxxxAAxnALxxLxxx >c4x8wE_ GGGIDYILLGEIATENQFEVTYVDIEETFSGQFQCLVQLSTLPVGVCHGSGPTAADAQRHAAQNALEYLIMT >UniRef50_UPI0001792EAC(476-537:574) PREDICTED: similar to staufen, RNA binding protein, homolog 2 n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792EAC E=3e-05 s/c=0.80 id=32% cov=88% --------LDYFSQMLGFKVQYSEFPKGNHNDYLTLVSLSTMPPQICKGSGSTLENSRNAAALNAISSLV-- >UniRef50_A7SHZ6(104-173:292) Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SHZ6_NEMVE E=2e-07 s/c=0.81 id=29% cov=88% --------LMSLAEKHGLVVKFTDYPKDNKGtpEFLSVCNVSCVPPITCYGSGKTIEESREEASANALNPLL-- >UniRef50_D2A048(382-441:480) Putative uncharacterized protein GLEAN_08157 n=2 Tax=Tribolium castaneum RepID=D2A048_TRICA E=6e-06 s/c=0.87 id=30% cov=85% --------LLEIGNKLNINVEFTDLIK-QDNQYYTLVSLGLKPPHVCLGKAAVQAKSHEDAALRGLQLL--- >UniRef50_UPI0000588C0A(216-280:306) PREDICTED: similar to MGC53736 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000588C0A E=4e-16 s/c=1.32 id=45% cov=90% -------MLQDLGNEQSFKVEYVPIEEqTQAGHYQCFVRLQTAPVTVCFANGLSRNDAMETSAHNALQYLKV- >UniRef50_O95793(493-553:577) Double-stranded RNA-binding protein Staufen homolog 1 n=87 Tax=Euteleostomi RepID=STAU1_HUMAN E=4e-16 s/c=1.40 id=27% cov=86% --------LDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLL--- >UniRef50_UPI000180B2E6(233-297:326) PREDICTED: similar to TAR (HIV) RNA binding protein 2 n=1 Tax=Ciona intestinalis RepID=UPI000180B2E6 E=6e-15 s/c=1.26 id=44% cov=88% -------VLEELANKHSFDAVYKDIEQtTVNGDRQCLLEVSTQPPCVLHGRGKSLNQSHSDAAVNALEYL--- >UniRef50_Q94239(637-698:705) Putative uncharacterized protein n=3 Tax=Caenorhabditis RepID=Q94239_CAEEL E=4e-05 s/c=0.79 id=22% cov=88% --------LEQLSDFFKFSLQYTSFPQVGIDQHFTIVSIGLEAPLVGHGTGCSTTEADENAALDAIAKLK-- >UniRef50_UPI0001925261(418-479:493) PREDICTED: similar to neuron-specific staufen n=1 Tax=Hydra magnipapillata RepID=UPI0001925261 E=6e-11 s/c=1.11 id=27% cov=83% --------LEYIAQLEGFQLMFNDFvknKKDNRGEFSSNLSIFTTPPEVYQGSGDSVEASRENASSKALK----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 G 2 1000 * * * * 1000 * * * * * * * * * * * * * * 2 0 * * * * * * 1367 0 0 G 3 * * * * * 0 * * * * * * * * * * * * * * 3 0 * * * * * * 1367 0 0 I 4 * * * * * * * 1065 * 1712 * * * * * * * 2205 * * 4 0 * * * * * * 1483 0 0 D 5 * * 0 * * * * * * * * * * * * * * * * * 5 0 * * * * * * 1812 0 0 Y 6 * * * * 2037 * * * * * * * * * * * * * * 403 6 0 * * * * * * 1812 0 0 I 7 * * * * * * * 797 * * * * * * * * * 1236 * * 7 2810 222 * 0 * * * 1812 1757 0 L 8 * * * * * * * * * 1394 1237 * * * * * * 2356 * * 8 0 * * * * * * 2355 0 0 L 9 * * * * * * * * * 55 4742 * * * * * * * * * 9 0 * * * * * * 3779 0 0 G 10 * * 3022 2219 * 5535 4688 * 5258 2006 3551 * * 3315 4100 4120 5315 * * * 10 0 * * * * * * 3779 0 0 E 11 * * 3031 1573 * * * * * * * * * 3257 * 3753 * * * 1463 11 0 * * * * * * 3779 0 0 I 12 * * * * 4728 * * 1509 * 711 * * * * * * * * * * 12 0 * * * * * * 3779 0 0 A 13 847 * * * * 3186 * * * * * * * * * 1581 * * * * 13 0 * * * * * * 3779 0 0 T 14 5315 * 2931 2455 * * * * 2735 5297 * 2730 * 2400 3550 * 4050 * * * 14 0 * * * * * * 3779 0 0 E 15 * * * 1318 3878 * 5746 4781 2742 2254 4728 * * * * * * 3664 * * 15 0 * * * * * * 3779 0 0 N 16 5540 * * 4302 3878 * 3375 * * 2001 4175 4421 * 1348 * * * * * 5746 16 0 * * * * * * 3779 0 0 Q 17 5013 * 4043 * * 1418 * * 3181 * * 2453 * 4421 3969 2934 * * * * 17 0 * * * * * * 3779 0 0 F 18 * * * * 215 * * 3593 * 4170 * * * * * * * * * * 18 0 * * * * * * 3779 0 0 E 19 * * 4614 1849 * 5318 5013 * 3403 * * 3650 * 1994 * 3020 * 3698 * * 19 0 * * * * * * 3779 0 0 V 20 4614 * * * * * * 5234 * 3075 * * * * * * * 297 * * 20 0 * * * * * * 3779 0 0 T 21 * * 5289 2466 * * 4064 * 4170 * 4302 4551 * 2174 * 4158 1909 4614 * * 21 0 * * * * * * 3779 0 0 Y 22 * * * * 1522 * * * * * * * * * * * * * * 618 22 0 * * * * * * 3779 0 0 V 23 * * * * 4742 * * 5297 3477 3254 * 3522 * * * 2346 2151 2098 * * 23 0 * * * * * * 3779 0 0 D 24 * * 383 4728 * * * * * * * 4742 3474 * * 3878 * * * * 24 0 * * * * * * 3779 0 0 I 25 4781 * * * 1461 * * 1178 * 4235 * * * * * * * * * 3249 25 104 4302 5746 1585 585 * * 3779 1000 0 E 26 * * 2603 1812 * * * 4219 4281 * * * 1292 4760 * * * * * * 26 0 * * * * * 0 3775 0 1000 E 27 * * * 1293 * * * * 1172 * * * * 3170 * 4760 * * * * 27 947 1226 4219 0 * * 0 3775 2404 1000 T 28 3776 * 3142 * * 1996 * * * * * 4230 * * * 2537 1929 3740 * * 28 57 * 4682 * * 623 1511 3681 0 1329 F 29 4301 * * * 4363 3795 * * * 2872 * 1383 * 3136 * * 3992 2921 * * 29 0 * * * * * 0 3735 0 1324 S 30 4106 * 3475 * * * 2450 3795 2785 * * 2516 * * 4179 2582 5259 * * 5130 30 0 * * * * 617 1524 3735 0 1324 G 31 * * 3842 5043 * 836 * * 3977 * * 2376 * * 5033 4241 * * * * 31 86 4112 * 1000 1000 * 0 3775 1000 1000 Q 32 * * 2765 1607 * * 4132 * 4890 3652 3861 * * 2024 4661 * * * * * 32 0 * * * * * 0 3775 0 1000 F 33 * 4990 * * 1483 * 2755 * * * * * * * 4595 * * * * 1247 33 0 * * * * * 0 3775 0 1000 Q 34 * * * * 3842 * 4743 * * 1789 * * * 1279 * 4281 * 3534 * 4219 34 0 * * * * * 0 3775 0 1000 C 35 * 1154 * * * * * * * * * * * * * 1878 1844 * * * 35 0 * * * * * 0 3775 0 1000 L 36 * * * * 4132 * * 3047 * 565 * 4281 * * * * * 4112 * 4760 36 0 * * * * * 0 3775 0 1000 V 37 3933 4112 * * * * * 4339 * 2946 * * * * * * * 520 * * 37 0 * * * * * 0 3775 0 1000 Q 38 * * * 2399 * * * 5364 * * 5263 3221 * 2302 4132 1888 3025 * * * 38 0 * * * * * 0 3775 0 1000 L 39 * 4339 * * * * * 2764 * 569 5048 * * * * * * 3333 * * 39 0 * * * * * 0 3775 0 1000 S 40 * * * * 4281 3018 * * * * * * * 4132 * 554 3524 * * * 40 54 * 4760 * * * 0 3775 0 1000 T 41 * 4060 * * * * * * * 2969 * * * * * 3519 464 * * * 41 0 * * * * * 0 3735 0 1324 L 42 4106 4957 4068 3346 * * 5230 * 4167 2775 4636 3371 * 2489 5235 3909 4179 4060 * * 42 0 * * * * 617 1524 3735 0 1324 P 43 3842 * * * * * * * * * * * 104 * * * * * * * 43 0 * * * * 0 * 3775 0 1000 V 44 5013 * * * * * * 4276 * 4911 * * 909 * * 5065 * 1636 * * 44 0 * * * * * * 3779 0 0 G 45 2942 4614 * 4302 * 4421 3591 4170 * 3095 * * * 2101 * * 2419 4158 * * 45 0 * * * * * * 3779 0 0 V 46 * * * * * * * 2875 * 5406 4781 * * * * * 4170 419 * * 46 0 * * * * * * 3779 0 0 C 47 * 464 * * * 3878 * * * 4614 * * * * * 3664 4781 * * 4302 47 53 4781 * 0 * * * 3779 1000 0 H 48 * * * * 3474 * 611 * 4728 4235 * * * 4302 * * * * * 3137 48 0 * * * * * * 3779 0 0 G 49 4139 * * * * 84 * * * * * * * * * * * * * * 49 0 * * * * * * 3779 0 0 S 50 3893 * * 5069 5318 * 5258 3169 4235 * * 4139 * 5493 4614 1476 2440 5379 * * 50 0 * * * * * * 3779 0 0 G 51 2812 * * * * 222 * * * * * * * * * * * * * * 51 0 * * * * * * 3779 0 0 P 52 2809 3878 4302 4911 * * 5493 3314 2562 3529 * 5746 3285 * * 2747 5013 5297 * * 52 0 * * * * * * 3779 0 0 T 53 * * 4352 * * * * * * * * 4409 * * * 1051 1441 4235 * * 53 0 * * * * * * 3779 0 0 A 54 3171 3967 4772 5746 * * * 3549 5258 2369 * * 4911 4235 3185 4337 3354 3045 * * 54 0 * * * * * * 3779 0 0 A 55 3743 * 4403 1361 * 5234 * * 3367 * * 3357 * 3547 5315 3491 3878 * * * 55 0 * * * * * * 3779 0 0 D 56 2014 * 3121 1581 * * * * 4235 * * 2976 * 3755 * 4352 * * * * 56 0 * * * * * * 3779 0 0 A 57 1036 4352 * * * * * * * * * * * * * 1110 * * * * 57 0 * * * * * * 3779 0 0 Q 58 * * 3878 * * * 1449 * 4772 * 4139 * * 2231 1947 * * * * * 58 0 * * * * * * 3779 0 0 R 59 3298 * 2572 1426 * 4990 * * * 4753 * 2954 * * 4389 3436 5614 * * * 59 0 * * * * * * 3740 0 0 H 60 2328 * 2343 2775 * * 3827 * 5025 * 4253 2628 * 4089 * 5283 4114 * * * 60 0 * * * * * * 3740 0 0 A 61 86 * * * * * * * * * * * * * * 4114 * * * * 61 0 * * * * * * 3740 0 0 A 62 171 * * * * * * * * * * * * * * 3158 * * * * 62 0 * * * * * * 3740 0 0 Q 63 4117 * * * 4753 * 2189 * * 1564 * * * 4389 2499 3646 * 4530 * * 63 0 * * * * * * 3740 0 0 N 64 4990 * 3832 5025 * 5291 4753 * 4200 * * 906 * * 3531 3802 4089 * * * 64 0 * * * * * * 3740 0 0 A 65 284 * * * * 4184 * 4253 * * * * * * * 4647 * 4990 * * 65 0 * * * * * * 3740 0 0 L 66 * 4753 * * * * * 3187 * 229 * * * * * * * * * * 66 0 * * * * * * 3740 0 0 E 67 3795 * * 2185 * * * * 2369 * * 4060 * 1633 4041 4636 5009 * * * 67 0 * * * * * * 3735 0 0 Y 68 4939 * * * * * * 3529 3674 3131 * * 3881 * * 4578 3951 4921 * 1056 68 0 * * * * * * 3649 0 0 L 69 * * * * * * * 3878 * 102 * * * * * * * * * * 69 294 2437 * 0 * * * 3649 1523 0 I 70 * * * * * * * 2232 874 2853 * * * * * * * 3276 * * 70 0 * * * * * * 3162 0 0 M 71 * * * * * * * 1406 * 3761 1232 * * * * * * 3022 * * 71 0 * * * * * * 2194 0 0 T 72 * * * * * * * * * * * * * * * * 0 * * * 72 0 * * 0 * * * 1539 0 0 //